Rorug01G0099200

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006244
Physical Location & Seq
Reverse (-)
16453230 .. 16459452
6223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0099200.1

Sequence Viewer

Length: 2571 bp
ATGGACACTGAAGTTTTGGCAGATGTTGAAGCAGAAGACAGGGAACGTGTAGACTCTGAATCTGATAAAGGTGTAAAGCAAAATGTAAATGATAGTTTTGCAGGGAGAGAAATAATTGTACAGGATGAGGATGGGAATGCTAAACCATATGTGGGAATGGAGTTCGAATCAGAGGATGCTGCCAAGGCTCTCTATGATGCGCATGCTAGGTGTGCTGGTTTTAGCACCCATGTTGGTCAGTTTAGTCGTAACAAGCCTGATGGACCAATAGTGACATGGGAATTTGCATGTTCAAGAGAGGTATTCAAAAGAAAGAATGTTGAAAGTTGCAATGCTATGCTACGCGTAGAGAGAAAAGATGCAAACACTTGGGTTGCCACTAAGTTTATTGAGGACCACAACCATTCGATGGAAAGTCCAAATAAAGTCCATTACCTTCGACCGCGTAGACACTTTGCAGGTGCTACAAAGAATACAGCTGAGACTTTGGATGTCACTTCTGATGCTTATGTCTCTATGGATGGGAATCATGTCCCTTATGAACCAAATCGTGGAGGTAGGAGTGTCTCTCCTGTTGAACAAAATCGCCCTGCCAGGAATTTTGGGCCTATTAACTGTACAAGGCCTTCTAGCCGGAAGAGAACACTTGGAAGAGATGCTCAAAATCTTCTAAACTATTTCAAGAAGATGCAGGCTGAAAATCCTGGATTTTATTATGCCATACAGCTTGATGATGAAAACCGCATGACTAATGTTTTCTGGACTGATGCGAGATCGAGGACCGCTTACAACTACTTTGGAGATGCTGTAATATTTGATACAATGTATCGACCAAATCAGTACCAGGTGCCGTTTGCTCCTTTTACCGGTGTAAATCATCACGGCCAGATGGTATTGTTTGGCTGTGCATTACTTCTAGATGAGTCTGAGTCTTCCTTTACTTGGCTGTTTAAGACATGGCTTTCTGCAATGAATGATCGACCTCCTATTTCTATAACTACCGACCAAGATAGAGCAATACAAGTGGCAGTAGCGCAGGTATTCCCAGATGCGCGCCACTGTATATGCAAGTGGCACATTTTAAGAGAAGGCCAAGAAAGATTGGCTCATATATATCTTGCTAATCCTTCCTTTTATGGAGAGCTGTATAGCTGCATCAACTTTTCAGAGACAATTGAGGATTTTGAATCGTCATGGGTGTCCATTCTTGATAGATATGACCTTCGGAGAAATGATTGGCTGCAGGCAGTGTATAATGCTCGAAAGCAGTGGGCCCCAGTTTATTTTCGTGGGACTTTCTTTGCTGCAATTTCCTCAAATCAAGGAGTTAGATCTTTCTTTGATGGCTATGTGAATCAACAGACGAGTGTACCTCTGTTCTTTAAGCAGTATGAAAGGGCTCTGGAGCATGCATTAGAAAAAGAAATAGAAGCAGATTATGATACAGTTTGCACCACACCAGTACTGAAGACACCATCACCAATGGAACAACAGGCAGCTAGCTTGTATACAAAAAAAGTATTTTCTAAGTTTCAGGAGGAATTAGTTGAAACTTTTGTCTATACTGCAAATAAGATAGATGGAGATGGGCTTGCCAGTAAATACAGGGTTGCGAAGTATGAACATGATGACAAGGCTTATATAGTTGAACTAAATGTCTCAGAGATGAAAGCAAGCTGCAGCTGTCAAATGTTTGAATATGCTGGCATCCTCTGTAGACATATTTTGACTGTCTTCACCGTCACCAATGTTCTTACCCTTCCATCACATTACATATTGAAGCGATGGACAAGGAATGCCAAATCTTGGGTTGGAGTAGATGAACAGATCTCAGATCCGCAAGGTGTTGAGATACTCACTGTGCGGTTCAACAATTTATGTCAGGAAGCCATTAAATATGCGGAAGAAGGGGCAGTTGCTGTAGAGACTTACAATGCAGCAATGATTGCTCTACGAGACAGTGGGAAAAAGATTGCTGATTTGAAGAAAAATGTTGCTAAAGTTGCACCTCCTAGCTCTCAGGGTAGTGGAAGTATTCAGGAAGAAAATATGAAAAAAGCTTCTTTGCCATTTGGTGAAATGGTCCCCCCATTGTGGCCTTGGCAAGAAGCATTGCCACATCGCTTTAATCTTAATGATGTCGGAGTTCCTGTTTCTGATATAAATCAGCCTAGCATGGCGGGCTCTATTCAACCCGATGGTGGGCATCCTGATAATACGGTGGTTTATACTTGCTTCAAGTCCATGACATGGGTCATAGAAAATAAGAATTCAACATCAGCTGGAAAAGTTGCTGTTATTAACTTGAAGCTGCAAGATTATGGCAAGAACCCGGCAGGAGAAACAGATGTACAATTTAGGGTAACCAGGGTTACACTAGAGCCTATGTTAAGATCGATGGCCTACATTGGTCAGCAACTTTCTGCACCAGCCAACAGAGTTGCTGTTATCAATCTCAAGCTTCAAGATACAAATACAACATCTGGAGAAACAGAAGTCAAGTTTCAAGTGTCCAGAGATACACTAGATTCCATGTTGAGATCAATGGCTTACATCCGTGAACAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05169 map03013 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

856

Amino Acids

97.03

Weight (kDa)

5.81

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 64 - 137 1.6e-10 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 230 - 352 6.7e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 270 - 361 1.5e-28 MULE transposase domain
SWIM PF04434 551 - 581 8.6e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
Acc16I TGCGCA 1 cut(s) 201
Acc36I ACCTGC 2 cut(s) 449, 1027
AccB1I GGYRCC 1 cut(s) 847
AccB7I CCANNNNNTGG 4 cut(s) 409, 551, 1806, 2250
AccI GTMKAC 4 cut(s) 51, 448, 1508, 1717
AccII CGCG 3 cut(s) 345, 445, 1054
AciI CCGC 7 cut(s) 443, 742, 783, 1838, 1864, 1901, 2180
AclWI GGATC 1 cut(s) 1829
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 3 cut(s) 281, 598, 2269
AcuI CTGAAG 2 cut(s) 30, 1487
AfaI GTAC 6 cut(s) 120, 619, 842, 1371, 1464, 2352
AflIII ACRYGT 2 cut(s) 46, 343
AgeI ACCGGT 1 cut(s) 866
AjnI CCWGG 4 cut(s) 593, 703, 843, 2366
Alw26I GTCTC 7 cut(s) 476, 517, 571, 1163, 1663, 1919, 1950
AlwI GGATC 1 cut(s) 1829
AlwNI CAGNNNCTG 1 cut(s) 1919
AoxI GGCC 7 cut(s) 605, 623, 883, 1090, 1272, 2096, 2400
ApaI GGGCCC 1 cut(s) 1276
ApeKI GCWGC 9 cut(s) 179, 1152, 1240, 1304, 1496, 1677, 1680, 1937, 2311
ApoI RAATTY 3 cut(s) 281, 598, 2269
AsiGI ACCGGT 1 cut(s) 866
AspLEI GCGC 4 cut(s) 202, 1036, 1054, 1056
AspS9I GGNCC 7 cut(s) 263, 394, 605, 780, 1272, 1273, 2083
AsuC2I CCSGG 1 cut(s) 2333
AsuHPI GGTGA 4 cut(s) 1470, 1729, 1735, 2087
AsuII TTCGAA 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 1499
AvaII GGWCC 4 cut(s) 263, 394, 780, 2083
BaeGI GKGCMC 1 cut(s) 1276
BaeI ACNNNNGTAYC 2 cut(s) 1353, 1386
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 3 cut(s) 1276, 1402, 2186
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BbsI GAAGAC 4 cut(s) 42, 924, 1475, 1726
BbvI GCAGC 9 cut(s) 166, 1139, 1227, 1291, 1508, 1664, 1692, 1949, 2298
BceAI ACGGC 2 cut(s) 835, 898
BciT130I CCWGG 4 cut(s) 595, 705, 845, 2368
BcnI CCSGG 1 cut(s) 2333
BcoDI GTCTC 7 cut(s) 476, 517, 571, 1163, 1663, 1919, 1950
BfaI CTAG 8 cut(s) 207, 630, 917, 1500, 2013, 2172, 2378, 2525
BfmI CTRYAG 4 cut(s) 1241, 1678, 1714, 1920
BfuAI ACCTGC 2 cut(s) 449, 1027
BglII AGATCT 2 cut(s) 1331, 1827
BisI GCNGC 9 cut(s) 180, 1153, 1241, 1305, 1497, 1678, 1681, 1938, 2312
BlsI GCNGC 9 cut(s) 181, 1154, 1242, 1306, 1498, 1679, 1682, 1939, 2313
BmcAI AGTACT 1 cut(s) 1464
Bme1390I CCNGG 5 cut(s) 595, 705, 845, 2333, 2368
Bme18I GGWCC 4 cut(s) 263, 394, 780, 2083
BmgT120I GGNCC 7 cut(s) 263, 394, 605, 780, 1272, 1273, 2083
BmiI GGNNCC 4 cut(s) 849, 1274, 1275, 2085
BmrFI CCNGG 5 cut(s) 595, 705, 845, 2333, 2368
BmrI ACTGGG 1 cut(s) 1271
BmtI GCTAGC 1 cut(s) 1503
BmuI ACTGGG 1 cut(s) 1271
BoxI GACNNNNGTC 1 cut(s) 2252
BpiI GAAGAC 4 cut(s) 42, 924, 1475, 1726
BplI GAGNNNNNCTC 4 cut(s) 553, 585, 1357, 1389
BpmI CTGGAG 2 cut(s) 1424, 2505
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 2441
BpuMI CCSGG 1 cut(s) 2333
Bsa29I ATCGAT 1 cut(s) 2396
BsaBI GATNNNNATC 2 cut(s) 525, 2163
BsaJI CCNNGG 3 cut(s) 183, 2099, 2367
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 4 cut(s) 792, 822, 2136, 2166
Bse118I RCCGGY 1 cut(s) 866
Bse1I ACTGG 3 cut(s) 1277, 1460, 1596
Bse3DI GCAATG 4 cut(s) 337, 975, 1947, 2111
Bse8I GATNNNNATC 2 cut(s) 525, 2163
BseBI CCWGG 4 cut(s) 595, 705, 845, 2368
BseCI ATCGAT 1 cut(s) 2396
BseDI CCNNGG 3 cut(s) 183, 2099, 2367
BseGI GGATG 8 cut(s) 130, 136, 181, 496, 526, 1707, 2206, 2553
BseJI GATNNNNATC 2 cut(s) 525, 2163
BseMI GCAATG 4 cut(s) 337, 975, 1947, 2111
BseMII CTCAG 5 cut(s) 471, 918, 1674, 1845, 2033
BseNI ACTGG 3 cut(s) 1277, 1460, 1596
BsePI GCGCGC 1 cut(s) 1052
BseSI GKGCMC 1 cut(s) 1276
BseXI GCAGC 9 cut(s) 166, 1139, 1227, 1291, 1508, 1664, 1692, 1949, 2298
BsgI GTGCAG 1 cut(s) 2409
Bsh1236I CGCG 3 cut(s) 345, 445, 1054
Bsh1285I CGRYCG 1 cut(s) 443
BshFI GGCC 7 cut(s) 607, 625, 885, 1092, 1274, 2098, 2402
BshNI GGYRCC 1 cut(s) 847
BshTI ACCGGT 1 cut(s) 866
BshVI ATCGAT 1 cut(s) 2396
BsiEI CGRYCG 1 cut(s) 443
BsiSI CCGG 3 cut(s) 634, 867, 2333
BslFI GGGAC 3 cut(s) 518, 1306, 2069
BsmAI GTCTC 7 cut(s) 476, 517, 571, 1163, 1663, 1919, 1950
BsmFI GGGAC 3 cut(s) 518, 1306, 2069
BsmI GAATGC 2 cut(s) 142, 1801
BsnI GGCC 7 cut(s) 607, 625, 885, 1092, 1274, 2098, 2402
Bsp119I TTCGAA 1 cut(s) 165
Bsp120I GGGCCC 1 cut(s) 1272
Bsp1286I GDGCHC 3 cut(s) 1276, 1402, 2186
Bsp1407I TGTACA 3 cut(s) 118, 617, 2350
Bsp143I GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
BspACI CCGC 7 cut(s) 443, 742, 783, 1838, 1864, 1901, 2180
BspANI GGCC 7 cut(s) 607, 625, 885, 1092, 1274, 2098, 2402
BspCNI CTCAG 5 cut(s) 472, 919, 1673, 1844, 2032
BspDI ATCGAT 1 cut(s) 2396
BspFNI CGCG 3 cut(s) 345, 445, 1054
BspLI GGNNCC 4 cut(s) 849, 1274, 1275, 2085
BspMAI CTGCAG 2 cut(s) 1245, 1682
BspMI ACCTGC 2 cut(s) 449, 1027
BspOI GCTAGC 1 cut(s) 1503
BspPI GGATC 1 cut(s) 1829
BspT104I TTCGAA 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 847
BsrDI GCAATG 4 cut(s) 337, 975, 1947, 2111
BsrFI RCCGGY 1 cut(s) 866
BsrGI TGTACA 3 cut(s) 118, 617, 2350
BsrI ACTGG 3 cut(s) 1277, 1460, 1596
BssAI RCCGGY 1 cut(s) 866
BssECI CCNNGG 3 cut(s) 183, 2099, 2367
BssHII GCGCGC 1 cut(s) 1052
BssMI GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
BssNAI GTATAC 1 cut(s) 1509
BssT1I CCWWGG 2 cut(s) 183, 2099
Bst1107I GTATAC 1 cut(s) 1509
Bst2UI CCWGG 4 cut(s) 595, 705, 845, 2368
Bst4CI ACNGT 8 cut(s) 617, 1061, 1447, 1732, 1741, 1861, 1961, 2221
Bst6I CTCTTC 2 cut(s) 632, 646
BstAPI GCANNNNNTGC 1 cut(s) 1946
BstAUI TGTACA 3 cut(s) 118, 617, 2350
BstBI TTCGAA 1 cut(s) 165
BstDEI CTNAG 7 cut(s) 381, 480, 927, 1527, 1660, 1831, 2019
BstEII GGTNACC 1 cut(s) 2362
BstF5I GGATG 8 cut(s) 130, 136, 181, 496, 526, 1707, 2206, 2553
BstFNI CGCG 3 cut(s) 345, 445, 1054
BstHHI GCGC 4 cut(s) 202, 1036, 1054, 1056
BstKTI GATC 7 cut(s) 776, 979, 1334, 1830, 1837, 2396, 2543
BstMAI GTCTC 7 cut(s) 476, 517, 571, 1163, 1663, 1919, 1950
BstMBI GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
BstMCI CGRYCG 1 cut(s) 443
BstMWI GCNNNNNNNGC 5 cut(s) 185, 212, 1946, 2003, 2181
BstNI CCWGG 4 cut(s) 595, 705, 845, 2368
BstNSI RCATGY 3 cut(s) 206, 291, 1412
BstPAI GACNNNNGTC 1 cut(s) 2252
BstPI GGTNACC 1 cut(s) 2362
BstSCI CCNGG 5 cut(s) 593, 703, 843, 2331, 2366
BstSFI CTRYAG 4 cut(s) 1241, 1678, 1714, 1920
BstSLI GKGCMC 1 cut(s) 1276
BstUI CGCG 3 cut(s) 345, 445, 1054
BstV1I GCAGC 9 cut(s) 166, 1139, 1227, 1291, 1508, 1664, 1692, 1949, 2298
BstV2I GAAGAC 4 cut(s) 42, 924, 1475, 1726
BstX2I RGATCY 3 cut(s) 1331, 1827, 1834
BstYI RGATCY 3 cut(s) 1331, 1827, 1834
BstZ17I GTATAC 1 cut(s) 1509
Bsu15I ATCGAT 1 cut(s) 2396
BsuRI GGCC 7 cut(s) 607, 625, 885, 1092, 1274, 2098, 2402
BsuTUI ATCGAT 1 cut(s) 2396
BtgZI GCGATG 2 cut(s) 1798, 2105
BtsCI GGATG 8 cut(s) 130, 136, 181, 496, 526, 1707, 2206, 2553
BtsI GCAGTG 2 cut(s) 1254, 1274
BtsIMutI CAGTG 6 cut(s) 6, 1057, 1254, 1274, 1857, 1966
BveI ACCTGC 2 cut(s) 449, 1027
CaiI CAGNNNCTG 1 cut(s) 1919
CfoI GCGC 4 cut(s) 202, 1036, 1054, 1056
Cfr10I RCCGGY 1 cut(s) 866
Cfr13I GGNCC 7 cut(s) 263, 394, 605, 780, 1272, 1273, 2083
ClaI ATCGAT 1 cut(s) 2396
CsiI ACCWGGT 1 cut(s) 843
Csp6I GTAC 6 cut(s) 119, 618, 841, 1370, 1463, 2351
CspAI ACCGGT 1 cut(s) 866
CspCI CAANNNNNGTGG 2 cut(s) 1005, 1040
CviQI GTAC 6 cut(s) 119, 618, 841, 1370, 1463, 2351
DdeI CTNAG 7 cut(s) 381, 480, 927, 1527, 1660, 1831, 2019
DpnI GATC 7 cut(s) 775, 978, 1333, 1829, 1836, 2395, 2542
DpnII GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 2 cut(s) 632, 646
EarI CTCTTC 2 cut(s) 632, 646
Eco130I CCWWGG 2 cut(s) 183, 2099
Eco147I AGGCCT 1 cut(s) 625
Eco24I GRGCYC 3 cut(s) 1276, 1402, 2186
Eco47I GGWCC 4 cut(s) 263, 394, 780, 2083
Eco57I CTGAAG 2 cut(s) 30, 1487
Eco91I GGTNACC 1 cut(s) 2362
EcoO109I RGGNCCY 1 cut(s) 1273
EcoO65I GGTNACC 1 cut(s) 2362
EcoRI GAATTC 1 cut(s) 2269
EcoRII CCWGG 4 cut(s) 593, 703, 843, 2366
EcoT14I CCWWGG 2 cut(s) 183, 2099
EcoT22I ATGCAT 1 cut(s) 1414
EcoT38I GRGCYC 3 cut(s) 1276, 1402, 2186
ErhI CCWWGG 2 cut(s) 183, 2099
FaqI GGGAC 3 cut(s) 518, 1306, 2069
FauI CCCGC 1 cut(s) 2173
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 4 cut(s) 51, 448, 1508, 1717
Fnu4HI GCNGC 9 cut(s) 180, 1153, 1241, 1305, 1497, 1678, 1681, 1938, 2312
FokI GGATG 8 cut(s) 137, 143, 188, 503, 533, 1694, 2193, 2540
FriOI GRGCYC 3 cut(s) 1276, 1402, 2186
Fsp4HI GCNGC 9 cut(s) 180, 1153, 1241, 1305, 1497, 1678, 1681, 1938, 2312
FspAI RTGCGCAY 1 cut(s) 201
FspBI CTAG 8 cut(s) 207, 630, 917, 1500, 2013, 2172, 2378, 2525
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 4 cut(s) 201, 1035, 1053, 1055
GluI GCNGC 9 cut(s) 180, 1153, 1241, 1305, 1497, 1678, 1681, 1938, 2312
GsuI CTGGAG 2 cut(s) 1424, 2505
HaeIII GGCC 7 cut(s) 607, 625, 885, 1092, 1274, 2098, 2402
HapII CCGG 3 cut(s) 634, 867, 2333
HhaI GCGC 4 cut(s) 202, 1036, 1054, 1056
Hin6I GCGC 4 cut(s) 200, 1034, 1052, 1054
HinP1I GCGC 4 cut(s) 200, 1034, 1052, 1054
HindIII AAGCTT 2 cut(s) 2058, 2459
HinfI GANTC 9 cut(s) 53, 59, 167, 526, 923, 929, 1187, 1354, 2528
HpaII CCGG 3 cut(s) 634, 867, 2333
HphI GGTGA 4 cut(s) 1470, 1729, 1735, 2087
Hpy166II GTNNAC 6 cut(s) 52, 449, 1370, 1509, 1718, 2561
Hpy8I GTNNAC 6 cut(s) 52, 449, 1370, 1509, 1718, 2561
HpyAV CCTTC 7 cut(s) 446, 636, 1082, 1137, 1232, 1769, 1901
HpyCH4III ACNGT 8 cut(s) 617, 1061, 1447, 1732, 1741, 1861, 1961, 2221
HpyCH4IV ACGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 212, 1946, 2003, 2181
HpyF3I CTNAG 7 cut(s) 381, 480, 927, 1527, 1660, 1831, 2019
HpySE526I ACGT 1 cut(s) 46
HspAI GCGC 4 cut(s) 200, 1034, 1052, 1054
Kzo9I GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
LmnI GCTCC 2 cut(s) 862, 1405
Lsp1109I GCAGC 9 cut(s) 166, 1139, 1227, 1291, 1508, 1664, 1692, 1949, 2298
MabI ACCWGGT 1 cut(s) 843
MaeI CTAG 8 cut(s) 207, 630, 917, 1500, 2013, 2172, 2378, 2525
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 6 cut(s) 248, 271, 493, 1741, 2362, 2371
MalI GATC 7 cut(s) 775, 978, 1333, 1829, 1836, 2395, 2542
MboI GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
MfeI CAATTG 1 cut(s) 1173
MflI RGATCY 3 cut(s) 1331, 1827, 1834
MhlI GDGCHC 3 cut(s) 1276, 1402, 2186
MluCI AATT 9 cut(s) 114, 281, 598, 1173, 1308, 1541, 1873, 2269, 2354
MluI ACGCGT 1 cut(s) 343
MlyI GAGTC 3 cut(s) 47, 932, 938
MmeI TCCRAC 2 cut(s) 1792, 2122
Mph1103I ATGCAT 1 cut(s) 1414
MseI TTAA 9 cut(s) 612, 951, 1082, 1383, 1893, 2127, 2133, 2301, 2390
MspA1I CMGCKG 3 cut(s) 479, 1683, 2282
MspI CCGG 3 cut(s) 634, 867, 2333
MspR9I CCNGG 5 cut(s) 595, 705, 845, 2333, 2368
MunI CAATTG 1 cut(s) 1173
Mva1269I GAATGC 2 cut(s) 142, 1801
MvaI CCWGG 4 cut(s) 595, 705, 845, 2368
MvnI CGCG 3 cut(s) 345, 445, 1054
MwoI GCNNNNNNNGC 5 cut(s) 185, 212, 1946, 2003, 2181
NciI CCSGG 1 cut(s) 2333
NdeI CATATG 1 cut(s) 148
NdeII GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
NheI GCTAGC 1 cut(s) 1499
NlaIV GGNNCC 4 cut(s) 849, 1274, 1275, 2085
NmuCI GTSAC 3 cut(s) 271, 493, 1741
NsbI TGCGCA 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 1414
NspI RCATGY 3 cut(s) 206, 291, 1412
NspV TTCGAA 1 cut(s) 165
PaeI GCATGC 2 cut(s) 206, 1412
PaqCI CACCTGC 1 cut(s) 449
PauI GCGCGC 1 cut(s) 1052
PceI AGGCCT 1 cut(s) 625
PctI GAATGC 2 cut(s) 142, 1801
PfeI GAWTC 6 cut(s) 59, 167, 526, 1187, 1354, 2528
PflMI CCANNNNNTGG 4 cut(s) 409, 551, 1806, 2250
PfoI TCCNGGA 1 cut(s) 703
PinAI ACCGGT 1 cut(s) 866
PkrI GCNGC 9 cut(s) 181, 1154, 1242, 1306, 1498, 1679, 1682, 1939, 2313
PleI GAGTC 3 cut(s) 47, 931, 937
PpsI GAGTC 3 cut(s) 47, 931, 937
PshAI GACNNNNGTC 1 cut(s) 2252
Psp6I CCWGG 4 cut(s) 593, 703, 843, 2366
PspEI GGTNACC 1 cut(s) 2362
PspGI CCWGG 4 cut(s) 593, 703, 843, 2366
PspN4I GGNNCC 4 cut(s) 849, 1274, 1275, 2085
PspOMI GGGCCC 1 cut(s) 1272
PspPI GGNCC 7 cut(s) 263, 394, 605, 780, 1272, 1273, 2083
PstI CTGCAG 2 cut(s) 1245, 1682
PstNI CAGNNNCTG 1 cut(s) 1919
PsuI RGATCY 3 cut(s) 1331, 1827, 1834
PteI GCGCGC 1 cut(s) 1052
PvuII CAGCTG 3 cut(s) 479, 1683, 2282
RsaI GTAC 6 cut(s) 120, 619, 842, 1371, 1464, 2352
RsaNI GTAC 6 cut(s) 119, 618, 841, 1370, 1463, 2351
SaqAI TTAA 9 cut(s) 612, 951, 1082, 1383, 1893, 2127, 2133, 2301, 2390
SatI GCNGC 9 cut(s) 180, 1153, 1241, 1305, 1497, 1678, 1681, 1938, 2312
Sau3AI GATC 7 cut(s) 773, 976, 1331, 1827, 1834, 2393, 2540
Sau96I GGNCC 7 cut(s) 263, 394, 605, 780, 1272, 1273, 2083
ScaI AGTACT 1 cut(s) 1464
SchI GAGTC 3 cut(s) 47, 932, 938
ScrFI CCNGG 5 cut(s) 595, 705, 845, 2333, 2368
SduI GDGCHC 3 cut(s) 1276, 1402, 2186
SexAI ACCWGGT 1 cut(s) 843
SfcI CTRYAG 4 cut(s) 1241, 1678, 1714, 1920
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 4 cut(s) 263, 394, 780, 2083
SmlI CTYRAG 1 cut(s) 2456
SmoI CTYRAG 1 cut(s) 2456
SphI GCATGC 2 cut(s) 206, 1412
Sse9I AATT 9 cut(s) 114, 281, 598, 1173, 1308, 1541, 1873, 2269, 2354
SseBI AGGCCT 1 cut(s) 625
SsiI CCGC 7 cut(s) 443, 742, 783, 1838, 1864, 1901, 2180
SspI AATATT 1 cut(s) 813
SspMI CTAG 8 cut(s) 207, 630, 917, 1500, 2013, 2172, 2378, 2525
StuI AGGCCT 1 cut(s) 625
StyD4I CCNGG 5 cut(s) 593, 703, 843, 2331, 2366
StyI CCWWGG 2 cut(s) 183, 2099
TaaI ACNGT 8 cut(s) 617, 1061, 1447, 1732, 1741, 1861, 1961, 2221
TaiI ACGT 1 cut(s) 49
TaqI TCGA 8 cut(s) 165, 407, 439, 776, 829, 979, 1261, 2396
TasI AATT 9 cut(s) 114, 281, 598, 1173, 1308, 1541, 1873, 2269, 2354
TatI WGTACW 4 cut(s) 118, 617, 1462, 2350
TfiI GAWTC 6 cut(s) 59, 167, 526, 1187, 1354, 2528
Tru1I TTAA 9 cut(s) 612, 951, 1082, 1383, 1893, 2127, 2133, 2301, 2390
Tru9I TTAA 9 cut(s) 612, 951, 1082, 1383, 1893, 2127, 2133, 2301, 2390
TscAI CASTG 6 cut(s) 13, 1064, 1254, 1274, 1864, 1966
TseFI GTSAC 3 cut(s) 271, 493, 1741
TseI GCWGC 9 cut(s) 179, 1152, 1240, 1304, 1496, 1677, 1680, 1937, 2311
Tsp45I GTSAC 3 cut(s) 271, 493, 1741
TspDTI ATGAA 8 cut(s) 555, 750, 986, 1407, 1635, 1682, 1836, 2066
TspGWI ACGGA 1 cut(s) 2546
TspRI CASTG 6 cut(s) 13, 1064, 1254, 1274, 1864, 1966
Van91I CCANNNNNTGG 4 cut(s) 409, 551, 1806, 2250
VpaK11BI GGWCC 4 cut(s) 263, 394, 780, 2083
XapI RAATTY 3 cut(s) 281, 598, 2269
XbaI TCTAGA 1 cut(s) 916
XceI RCATGY 3 cut(s) 206, 291, 1412
XcmI CCANNNNNNNNNTGG 2 cut(s) 273, 2097
XmiI GTMKAC 4 cut(s) 51, 448, 1508, 1717
XspI CTAG 8 cut(s) 207, 630, 917, 1500, 2013, 2172, 2378, 2525
ZrmI AGTACT 1 cut(s) 1464
Zsp2I ATGCAT 1 cut(s) 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.