Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006244

Physical Location & Seq

Genomic Coordinates Reverse (-)

22272929 .. 22273535

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAACGGCAGCGCGGGAAGAGAAGCAGCAGCCCTACGAATCACTAGGCACGGGCGGCAAGTTCCGGAAAACGCCATTCCGAAGAACCACCCAAACGACGCCGTATGACCGGCCCTCCACCGCTCTTCGAAACCCTAGCACTGCAAACGGTGGCTGGATCTCCAAGCTCGTCGATCCCGCTCAGAGGCTTCTTACCTACAGCGCCCACCGCCTATTCTCCACTGTCTTCAATAAACGCCTCCCTGCGCCGCCGCCGCCGCCTTCCATAGAGCCAAATCATGAAGCAAGGATTATGGACAAGGAAGAAGTTGGTATGGTAAGTCCTATATCTCCTTGTGTTGGTTGTTCTCTATGCGACAATTTTGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05169 map03013 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

9.41

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10650 AT3G10650
fragaria_vesca	FvH4_7g05430 FvH4_7g05440 FvH4_7g05440 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480
malus_domestica	MD02G1257800.v1.1 MD07G1063100.v1.1
prunus_persica	Prupe.2G074800_v2.0.a1
pyrus_communis	pycom02g21880 pycom07g04820
rosa_chinensis	RchiOBHm_Chr1g0332241
rosa_laevigata	RLG00000029683
rosa_multiflora	Rmu_co8444859.1_g000001 Rmu_sc0016174.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318320
rosa_rugosa	Rorug01G0099200
rosa_samantha	Rh1AG123000 Rh1BG094100 Rh1CG117600 Rh1DG128400
rosa_wichuraiana	Rw1G010030 Rw1G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	125, 182
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	66
AciI	CCGC	9 cut(s)	16, 57, 123, 180, 211, 251, 254, 257, 260
AclWI	GGATC	2 cut(s)	167, 170
AcyI	GRCGYC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	186, 341
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AlwI	GGATC	2 cut(s)	167, 170
Aor13HI	TCCGGA	1 cut(s)	66
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	11, 28, 31
AspLEI	GCGC	3 cut(s)	16, 206, 250
AspS9I	GGNCC	1 cut(s)	114
AsuII	TTCGAA	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	23, 40, 43
BceAI	ACGGC	2 cut(s)	24, 88
BcgI	CGANNNNNNTGC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	47, 138
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	8 cut(s)	12, 29, 32, 58, 251, 254, 257, 260
BlsI	GCNGC	8 cut(s)	13, 30, 33, 59, 252, 255, 258, 261
BmgT120I	GGNCC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 341
Bse118I	RCCGGY	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	186, 341
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	23, 40, 43
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	67, 112
BslI	CCNNNNNNNGG	2 cut(s)	186, 341
BsnI	GGCC	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	159, 175
BspACI	CCGC	9 cut(s)	16, 57, 123, 180, 211, 251, 254, 257, 260
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	280
BspPI	GGATC	2 cut(s)	167, 170
BspQI	GCTCTTC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	130
BsrBI	CCGCTC	2 cut(s)	125, 182
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssMI	GATC	2 cut(s)	159, 175
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	152, 226
Bst6I	CTCTTC	2 cut(s)	15, 132
BstACI	GRCGYC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	3 cut(s)	16, 206, 250
BstKTI	GATC	2 cut(s)	162, 178
BstMBI	GATC	2 cut(s)	159, 175
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 57, 210, 256, 259
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	23, 40, 43
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	141, 222
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	3 cut(s)	16, 206, 250
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	109
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	6 cut(s)	34, 115, 156, 169, 190, 274
CviKI_1	RGCY	6 cut(s)	34, 115, 156, 169, 190, 274
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	161, 177
DpnII	GATC	2 cut(s)	159, 175
Eam1104I	CTCTTC	2 cut(s)	15, 132
EarI	CTCTTC	2 cut(s)	15, 132
FaeI	CATG	1 cut(s)	284
FaiI	YATR	7 cut(s)	108, 269, 282, 296, 317, 329, 355
FatI	CATG	1 cut(s)	280
FauI	CCCGC	2 cut(s)	9, 187
Fnu4HI	GCNGC	8 cut(s)	12, 29, 32, 58, 251, 254, 257, 260
Fsp4HI	GCNGC	8 cut(s)	12, 29, 32, 58, 251, 254, 257, 260
FspBI	CTAG	2 cut(s)	47, 138
GlaI	GCGC	3 cut(s)	15, 205, 249
GluI	GCNGC	8 cut(s)	12, 29, 32, 58, 251, 254, 257, 260
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	2 cut(s)	67, 112
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	16, 206, 250
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	3 cut(s)	14, 204, 248
HinP1I	GCGC	3 cut(s)	14, 204, 248
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	67, 112
Hpy188I	TCNGA	3 cut(s)	83, 186, 374
Hpy188III	TCNNGA	2 cut(s)	67, 281
Hpy99I	CGWCG	2 cut(s)	103, 176
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	152, 226
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 57, 210, 256, 259
HpyF3I	CTNAG	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	3 cut(s)	14, 204, 248
Kpn2I	TCCGGA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	159, 175
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	80, 125, 142, 258
Lsp1109I	GCAGC	3 cut(s)	23, 40, 43
MaeI	CTAG	2 cut(s)	47, 138
MalI	GATC	2 cut(s)	161, 177
MbiI	CCGCTC	2 cut(s)	125, 182
MboI	GATC	2 cut(s)	159, 175
MboII	GAAGA	5 cut(s)	32, 96, 119, 220, 317
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	1 cut(s)	361
MnlI	CCTC	3 cut(s)	127, 180, 251
MroI	TCCGGA	1 cut(s)	66
MspI	CCGG	2 cut(s)	67, 112
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	5 cut(s)	11, 57, 210, 256, 259
NdeII	GATC	2 cut(s)	159, 175
NlaIII	CATG	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	130
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	8 cut(s)	13, 30, 33, 59, 252, 255, 258, 261
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	8 cut(s)	12, 29, 32, 58, 251, 254, 257, 260
Sau3AI	GATC	2 cut(s)	159, 175
Sau96I	GGNCC	1 cut(s)	114
SetI	ASST	2 cut(s)	171, 200
SfcI	CTRYAG	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	130
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	9 cut(s)	16, 57, 123, 180, 211, 251, 254, 257, 260
SspMI	CTAG	2 cut(s)	47, 138
TaaI	ACNGT	2 cut(s)	152, 226
TaqI	TCGA	2 cut(s)	130, 174
TasI	AATT	1 cut(s)	361
TauI	GCSGC	5 cut(s)	60, 253, 256, 259, 262
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	2 cut(s)	148, 229
TseI	GCWGC	3 cut(s)	11, 28, 31
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	148, 229
XspI	CTAG	2 cut(s)	47, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.