Nuclear pore complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10650 AT3G10650 |
| fragaria_vesca | FvH4_7g05430 FvH4_7g05440 FvH4_7g05440 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 |
| malus_domestica | MD02G1257800.v1.1 MD07G1063100.v1.1 |
| prunus_persica | Prupe.2G074800_v2.0.a1 |
| pyrus_communis | pycom02g21880 pycom07g04820 |
| rosa_chinensis | RchiOBHm_Chr1g0332241 |
| rosa_laevigata | RLG00000029683 |
| rosa_multiflora | Rmu_co8444859.1_g000001 Rmu_sc0016174.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00318320 |
| rosa_rugosa | Rorug01G0099200 |
| rosa_samantha | Rh1AG123000 Rh1BG094100 Rh1CG117600 Rh1DG128400 |
| rosa_wichuraiana | Rw1G010030 Rw1G010040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1473 |
| AarI | CACCTGC | 1 cut(s) | 2815 |
| Acc16I | TGCGCA | 1 cut(s) | 1686 |
| Acc36I | ACCTGC | 3 cut(s) | 2815, 3019, 3106 |
| Acc65I | GGTACC | 1 cut(s) | 2017 |
| AccB1I | GGYRCC | 3 cut(s) | 335, 2017, 3818 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 833, 3617 |
| AccBSI | CCGCTC | 2 cut(s) | 125, 182 |
| AccI | GTMKAC | 3 cut(s) | 938, 3551, 3596 |
| AccII | CGCG | 1 cut(s) | 16 |
| AccIII | TCCGGA | 1 cut(s) | 66 |
| AclWI | GGATC | 7 cut(s) | 167, 170, 308, 321, 350, 1069, 2636 |
| AcoI | YGGCCR | 2 cut(s) | 113, 3619 |
| AcsI | RAATTY | 9 cut(s) | 402, 551, 1083, 1451, 2246, 2290, 2543, 2597, 3113 |
| AcuI | CTGAAG | 5 cut(s) | 528, 1875, 2970, 3057, 3546 |
| AcvI | CACGTG | 1 cut(s) | 2800 |
| AcyI | GRCGYC | 2 cut(s) | 74, 101 |
| AdeI | CACNNNGTG | 1 cut(s) | 2840 |
| AfeI | AGCGCT | 1 cut(s) | 729 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 186, 833, 1173, 1901, 2014, 3443, 3617, 3734 |
| AflII | CTTAAG | 1 cut(s) | 1120 |
| AflIII | ACRYGT | 1 cut(s) | 2799 |
| AhlI | ACTAGT | 2 cut(s) | 2168, 2783 |
| AjiI | CACGTC | 1 cut(s) | 2358 |
| AjnI | CCWGG | 9 cut(s) | 89, 319, 1428, 1933, 2517, 2527, 2578, 2854, 2959 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 352, 384 |
| Alw21I | GWGCWC | 4 cut(s) | 456, 1726, 2845, 2921 |
| Alw26I | GTCTC | 5 cut(s) | 540, 719, 1227, 2260, 2307 |
| Alw44I | GTGCAC | 1 cut(s) | 2841 |
| AlwI | GGATC | 7 cut(s) | 167, 170, 308, 321, 350, 1069, 2636 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1420, 1664, 3179 |
| Ama87I | CYCGRG | 3 cut(s) | 855, 900, 3484 |
| Aor13HI | TCCGGA | 1 cut(s) | 66 |
| Aor51HI | AGCGCT | 1 cut(s) | 729 |
| AoxI | GGCC | 7 cut(s) | 113, 683, 1020, 1175, 1707, 2124, 3619 |
| ApaLI | GTGCAC | 1 cut(s) | 2841 |
| ApoI | RAATTY | 9 cut(s) | 402, 551, 1083, 1451, 2246, 2290, 2543, 2597, 3113 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2785 |
| Asp718I | GGTACC | 1 cut(s) | 2017 |
| AspA2I | CCTAGG | 1 cut(s) | 3787 |
| AspLEI | GCGC | 8 cut(s) | 16, 206, 730, 1687, 1940, 2578, 2687, 3350 |
| AspS9I | GGNCC | 6 cut(s) | 1020, 1070, 1559, 1707, 2125, 2507 |
| AsuII | TTCGAA | 1 cut(s) | 130 |
| AsuNHI | GCTAGC | 1 cut(s) | 2660 |
| AvaI | CYCGRG | 3 cut(s) | 855, 900, 3484 |
| AvaII | GGWCC | 3 cut(s) | 1070, 1559, 2507 |
| AvrII | CCTAGG | 1 cut(s) | 3787 |
| BaeGI | GKGCMC | 4 cut(s) | 53, 2518, 2797, 2845 |
| BalI | TGGCCA | 1 cut(s) | 3621 |
| BamHI | GGATCC | 1 cut(s) | 313 |
| BanI | GGYRCC | 3 cut(s) | 335, 2017, 3818 |
| BanII | GRGCYC | 3 cut(s) | 456, 1353, 2921 |
| BauI | CACGAG | 1 cut(s) | 2056 |
| BbrPI | CACGTG | 1 cut(s) | 2800 |
| BbsI | GAAGAC | 3 cut(s) | 77, 3519, 3534 |
| Bbv12I | GWGCWC | 4 cut(s) | 456, 1726, 2845, 2921 |
| BbvCI | CCTCAGC | 1 cut(s) | 3172 |
| BccI | CCATC | 8 cut(s) | 374, 709, 970, 1570, 1787, 2324, 3436, 3838 |
| BceAI | ACGGC | 4 cut(s) | 24, 88, 100, 2159 |
| BciT130I | CCWGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| BciVI | GTATCC | 2 cut(s) | 706, 1506 |
| BclI | TGATCA | 1 cut(s) | 3496 |
| BcoDI | GTCTC | 5 cut(s) | 540, 719, 1227, 2260, 2307 |
| BcuI | ACTAGT | 2 cut(s) | 2168, 2783 |
| BfmI | CTRYAG | 9 cut(s) | 199, 639, 651, 939, 1656, 1842, 2568, 3474, 3552 |
| BfoI | RGCGCY | 3 cut(s) | 207, 731, 2579 |
| BfrI | CTTAAG | 1 cut(s) | 1120 |
| BfuAI | ACCTGC | 3 cut(s) | 2815, 3019, 3106 |
| BfuI | GTATCC | 2 cut(s) | 706, 1506 |
| BglII | AGATCT | 4 cut(s) | 362, 503, 851, 863 |
| BlnI | CCTAGG | 1 cut(s) | 3787 |
| BmcAI | AGTACT | 5 cut(s) | 352, 2974, 2986, 3061, 3073 |
| Bme1390I | CCNGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| Bme18I | GGWCC | 3 cut(s) | 1070, 1559, 2507 |
| BmeT110I | CYCGRG | 3 cut(s) | 855, 900, 3484 |
| BmgBI | CACGTC | 1 cut(s) | 2358 |
| BmgT120I | GGNCC | 6 cut(s) | 1020, 1070, 1559, 1707, 2125, 2507 |
| BmiI | GGNNCC | 8 cut(s) | 315, 337, 1021, 2019, 2127, 3667, 3739, 3820 |
| BmrFI | CCNGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| BmrI | ACTGGG | 2 cut(s) | 56, 3605 |
| BmtI | GCTAGC | 1 cut(s) | 2664 |
| BmuI | ACTGGG | 2 cut(s) | 56, 3605 |
| BpiI | GAAGAC | 3 cut(s) | 77, 3519, 3534 |
| BpmI | CTGGAG | 7 cut(s) | 342, 396, 1451, 1757, 1853, 2838, 2953 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3172 |
| Bpu14I | TTCGAA | 1 cut(s) | 130 |
| BpuEI | CTTGAG | 2 cut(s) | 1189, 2064 |
| Bsa29I | ATCGAT | 1 cut(s) | 442 |
| BsaAI | YACGTR | 2 cut(s) | 1409, 2800 |
| BsaHI | GRCGYC | 2 cut(s) | 74, 101 |
| BsaI | GGTCTC | 1 cut(s) | 719 |
| BsaJI | CCNNGG | 6 cut(s) | 2298, 2517, 2592, 2959, 3483, 3787 |
| BsaWI | WCCGGW | 2 cut(s) | 66, 3870 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3406, 3436 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 186, 833, 1173, 1901, 2014, 3443, 3617, 3734 |
| Bse118I | RCCGGY | 2 cut(s) | 3386, 3821 |
| Bse3DI | GCAATG | 4 cut(s) | 566, 820, 2157, 2782 |
| BseAI | TCCGGA | 1 cut(s) | 66 |
| BseBI | CCWGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| BseCI | ATCGAT | 1 cut(s) | 442 |
| BseDI | CCNNGG | 6 cut(s) | 2298, 2517, 2592, 2959, 3483, 3787 |
| BseGI | GGATG | 9 cut(s) | 962, 1441, 1498, 1639, 1750, 3167, 3215, 3317, 3849 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 186, 833, 1173, 1901, 2014, 3443, 3617, 3734 |
| BseMI | GCAATG | 4 cut(s) | 566, 820, 2157, 2782 |
| BseMII | CTCAG | 8 cut(s) | 197, 405, 989, 1053, 1322, 2220, 2259, 3186 |
| BseRI | GAGGAG | 2 cut(s) | 211, 1186 |
| BseSI | GKGCMC | 4 cut(s) | 53, 2518, 2797, 2845 |
| BseX3I | CGGCCG | 1 cut(s) | 113 |
| BseYI | CCCAGC | 1 cut(s) | 2810 |
| BsgI | GTGCAG | 4 cut(s) | 2406, 2907, 3267, 3753 |
| Bsh1236I | CGCG | 1 cut(s) | 16 |
| Bsh1285I | CGRYCG | 1 cut(s) | 116 |
| BshFI | GGCC | 7 cut(s) | 115, 685, 1022, 1177, 1709, 2126, 3621 |
| BshNI | GGYRCC | 3 cut(s) | 335, 2017, 3818 |
| BshVI | ATCGAT | 1 cut(s) | 442 |
| BsiEI | CGRYCG | 1 cut(s) | 116 |
| BsiHKAI | GWGCWC | 4 cut(s) | 456, 1726, 2845, 2921 |
| BsiHKCI | CYCGRG | 3 cut(s) | 855, 900, 3484 |
| BsiSI | CCGG | 4 cut(s) | 67, 3387, 3822, 3871 |
| BsiWI | CGTACG | 1 cut(s) | 887 |
| BslFI | GGGAC | 2 cut(s) | 1991, 2827 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 186, 833, 1173, 1901, 2014, 3443, 3617, 3734 |
| BsmAI | GTCTC | 5 cut(s) | 540, 719, 1227, 2260, 2307 |
| BsmBI | CGTCTC | 2 cut(s) | 540, 2307 |
| BsmFI | GGGAC | 2 cut(s) | 1991, 2827 |
| BsmI | GAATGC | 2 cut(s) | 460, 3270 |
| BsnI | GGCC | 7 cut(s) | 115, 685, 1022, 1177, 1709, 2126, 3621 |
| Bso31I | GGTCTC | 1 cut(s) | 719 |
| BsoBI | CYCGRG | 3 cut(s) | 855, 900, 3484 |
| Bsp119I | TTCGAA | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 8 cut(s) | 53, 456, 1353, 1726, 2518, 2797, 2845, 2921 |
| Bsp13I | TCCGGA | 1 cut(s) | 66 |
| BspANI | GGCC | 7 cut(s) | 115, 685, 1022, 1177, 1709, 2126, 3621 |
| BspCNI | CTCAG | 8 cut(s) | 196, 404, 988, 1052, 1323, 2219, 2260, 3185 |
| BspDI | ATCGAT | 1 cut(s) | 442 |
| BspEI | TCCGGA | 1 cut(s) | 66 |
| BspFNI | CGCG | 1 cut(s) | 16 |
| BspHI | TCATGA | 3 cut(s) | 274, 538, 1726 |
| BspLI | GGNNCC | 8 cut(s) | 315, 337, 1021, 2019, 2127, 3667, 3739, 3820 |
| BspMAI | CTGCAG | 2 cut(s) | 1660, 2572 |
| BspMI | ACCTGC | 3 cut(s) | 2815, 3019, 3106 |
| BspOI | GCTAGC | 1 cut(s) | 2664 |
| BspPI | GGATC | 7 cut(s) | 167, 170, 308, 321, 350, 1069, 2636 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT104I | TTCGAA | 1 cut(s) | 130 |
| BspT107I | GGYRCC | 3 cut(s) | 335, 2017, 3818 |
| BspTI | CTTAAG | 1 cut(s) | 1120 |
| BspTNI | GGTCTC | 1 cut(s) | 719 |
| BsrBI | CCGCTC | 2 cut(s) | 125, 182 |
| BsrDI | GCAATG | 4 cut(s) | 566, 820, 2157, 2782 |
| BsrFI | RCCGGY | 2 cut(s) | 3386, 3821 |
| BssAI | RCCGGY | 2 cut(s) | 3386, 3821 |
| BssECI | CCNNGG | 6 cut(s) | 2298, 2517, 2592, 2959, 3483, 3787 |
| BssNI | GRCGYC | 2 cut(s) | 74, 101 |
| BssSI | CACGAG | 1 cut(s) | 2056 |
| BssT1I | CCWWGG | 3 cut(s) | 2298, 2592, 3787 |
| Bst2BI | CACGAG | 1 cut(s) | 2056 |
| Bst2UI | CCWGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| Bst6I | CTCTTC | 5 cut(s) | 15, 132, 2914, 2950, 3037 |
| BstACI | GRCGYC | 2 cut(s) | 74, 101 |
| BstAFI | CTTAAG | 1 cut(s) | 1120 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1664, 1877, 2678 |
| BstBAI | YACGTR | 2 cut(s) | 1409, 2800 |
| BstBI | TTCGAA | 1 cut(s) | 130 |
| BstC8I | GCNNGC | 7 cut(s) | 660, 2368, 2389, 2662, 2683, 3438, 3623 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1171 |
| BstF5I | GGATG | 9 cut(s) | 962, 1441, 1498, 1639, 1750, 3167, 3215, 3317, 3849 |
| BstFNI | CGCG | 1 cut(s) | 16 |
| BstH2I | RGCGCY | 3 cut(s) | 207, 731, 2579 |
| BstHHI | GCGC | 8 cut(s) | 16, 206, 730, 1687, 1940, 2578, 2687, 3350 |
| BstMAI | GTCTC | 5 cut(s) | 540, 719, 1227, 2260, 2307 |
| BstMCI | CGRYCG | 1 cut(s) | 116 |
| BstNI | CCWGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| BstNSI | RCATGY | 1 cut(s) | 3394 |
| BstSCI | CCNGG | 9 cut(s) | 89, 319, 1428, 1933, 2517, 2527, 2578, 2854, 2959 |
| BstSFI | CTRYAG | 9 cut(s) | 199, 639, 651, 939, 1656, 1842, 2568, 3474, 3552 |
| BstSLI | GKGCMC | 4 cut(s) | 53, 2518, 2797, 2845 |
| BstUI | CGCG | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 3 cut(s) | 77, 3519, 3534 |
| BstX2I | RGATCY | 8 cut(s) | 159, 313, 362, 503, 851, 863, 1061, 2628 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1004, 2470 |
| BstYI | RGATCY | 8 cut(s) | 159, 313, 362, 503, 851, 863, 1061, 2628 |
| BstZI | CGGCCG | 1 cut(s) | 113 |
| Bsu15I | ATCGAT | 1 cut(s) | 442 |
| BsuI | GTATCC | 2 cut(s) | 706, 1506 |
| BsuRI | GGCC | 7 cut(s) | 115, 685, 1022, 1177, 1709, 2126, 3621 |
| BsuTUI | ATCGAT | 1 cut(s) | 442 |
| BtrI | CACGTC | 1 cut(s) | 2358 |
| BtsCI | GGATG | 9 cut(s) | 962, 1441, 1498, 1639, 1750, 3167, 3215, 3317, 3849 |
| BtsI | GCAGTG | 3 cut(s) | 141, 534, 2130 |
| BveI | ACCTGC | 3 cut(s) | 2815, 3019, 3106 |
| Cac8I | GCNNGC | 7 cut(s) | 660, 2368, 2389, 2662, 2683, 3438, 3623 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1420, 1664, 3179 |
| CciI | TCATGA | 3 cut(s) | 274, 538, 1726 |
| CfoI | GCGC | 8 cut(s) | 16, 206, 730, 1687, 1940, 2578, 2687, 3350 |
| Cfr10I | RCCGGY | 2 cut(s) | 3386, 3821 |
| Cfr13I | GGNCC | 6 cut(s) | 1020, 1070, 1559, 1707, 2125, 2507 |
| ClaI | ATCGAT | 1 cut(s) | 442 |
| CseI | GACGC | 2 cut(s) | 82, 109 |
| DraI | TTTAAA | 1 cut(s) | 2245 |
| DraIII | CACNNNGTG | 1 cut(s) | 2840 |
| EaeI | YGGCCR | 2 cut(s) | 113, 3619 |
| EagI | CGGCCG | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 5 cut(s) | 15, 132, 2914, 2950, 3037 |
| EarI | CTCTTC | 5 cut(s) | 15, 132, 2914, 2950, 3037 |
| EciI | GGCGGA | 3 cut(s) | 109, 237, 1823 |
| Ecl136II | GAGCTC | 2 cut(s) | 454, 2919 |
| EclXI | CGGCCG | 1 cut(s) | 113 |
| Eco130I | CCWWGG | 3 cut(s) | 2298, 2592, 3787 |
| Eco147I | AGGCCT | 1 cut(s) | 685 |
| Eco24I | GRGCYC | 3 cut(s) | 456, 1353, 2921 |
| Eco31I | GGTCTC | 1 cut(s) | 719 |
| Eco47I | GGWCC | 3 cut(s) | 1070, 1559, 2507 |
| Eco47III | AGCGCT | 1 cut(s) | 729 |
| Eco52I | CGGCCG | 1 cut(s) | 113 |
| Eco53kI | GAGCTC | 2 cut(s) | 454, 2919 |
| Eco57I | CTGAAG | 5 cut(s) | 528, 1875, 2970, 3057, 3546 |
| Eco72I | CACGTG | 1 cut(s) | 2800 |
| Eco88I | CYCGRG | 3 cut(s) | 855, 900, 3484 |
| EcoICRI | GAGCTC | 2 cut(s) | 454, 2919 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1171 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1020 |
| EcoRI | GAATTC | 2 cut(s) | 1083, 2597 |
| EcoRII | CCWGG | 9 cut(s) | 89, 319, 1428, 1933, 2517, 2527, 2578, 2854, 2959 |
| EcoT14I | CCWWGG | 3 cut(s) | 2298, 2592, 3787 |
| EcoT38I | GRGCYC | 3 cut(s) | 456, 1353, 2921 |
| ErhI | CCWWGG | 3 cut(s) | 2298, 2592, 3787 |
| Esp3I | CGTCTC | 2 cut(s) | 540, 2307 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 352, 384 |
| FaqI | GGGAC | 2 cut(s) | 1991, 2827 |
| FauI | CCCGC | 4 cut(s) | 9, 187, 2618, 3080 |
| FauNDI | CATATG | 1 cut(s) | 983 |
| FbaI | TGATCA | 1 cut(s) | 3496 |
| FblI | GTMKAC | 3 cut(s) | 938, 3551, 3596 |
| FokI | GGATG | 9 cut(s) | 949, 1448, 1505, 1646, 1757, 3154, 3202, 3304, 3856 |
| FriOI | GRGCYC | 3 cut(s) | 456, 1353, 2921 |
| FspI | TGCGCA | 1 cut(s) | 1686 |
| GlaI | GCGC | 8 cut(s) | 15, 205, 729, 1686, 1939, 2577, 2686, 3349 |
| GsaI | CCCAGC | 1 cut(s) | 2814 |
| GsuI | CTGGAG | 7 cut(s) | 342, 396, 1451, 1757, 1853, 2838, 2953 |
| HaeII | RGCGCY | 3 cut(s) | 207, 731, 2579 |
| HaeIII | GGCC | 7 cut(s) | 115, 685, 1022, 1177, 1709, 2126, 3621 |
| HapII | CCGG | 4 cut(s) | 67, 3387, 3822, 3871 |
| HgaI | GACGC | 2 cut(s) | 82, 109 |
| HhaI | GCGC | 8 cut(s) | 16, 206, 730, 1687, 1940, 2578, 2687, 3350 |
| Hin1I | GRCGYC | 2 cut(s) | 74, 101 |
| Hin6I | GCGC | 8 cut(s) | 14, 204, 728, 1685, 1938, 2576, 2685, 3348 |
| HinP1I | GCGC | 8 cut(s) | 14, 204, 728, 1685, 1938, 2576, 2685, 3348 |
| HincII | GTYRAC | 3 cut(s) | 1193, 3572, 3636 |
| HindII | GTYRAC | 3 cut(s) | 1193, 3572, 3636 |
| HindIII | AAGCTT | 1 cut(s) | 666 |
| HinfI | GANTC | 7 cut(s) | 41, 490, 740, 1616, 1967, 2303, 2502 |
| HpaII | CCGG | 4 cut(s) | 67, 3387, 3822, 3871 |
| Hpy99I | CGWCG | 3 cut(s) | 87, 103, 176 |
| HpyCH4IV | ACGT | 4 cut(s) | 1408, 2357, 2799, 3287 |
| HpySE526I | ACGT | 4 cut(s) | 1408, 2357, 2799, 3287 |
| Hsp92I | GRCGYC | 2 cut(s) | 74, 101 |
| HspAI | GCGC | 8 cut(s) | 14, 204, 728, 1685, 1938, 2576, 2685, 3348 |
| Kpn2I | TCCGGA | 1 cut(s) | 66 |
| KpnI | GGTACC | 1 cut(s) | 2021 |
| Ksp22I | TGATCA | 1 cut(s) | 3496 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| MaeII | ACGT | 4 cut(s) | 1408, 2357, 2799, 3287 |
| MbiI | CCGCTC | 2 cut(s) | 125, 182 |
| MfeI | CAATTG | 1 cut(s) | 1785 |
| MflI | RGATCY | 8 cut(s) | 159, 313, 362, 503, 851, 863, 1061, 2628 |
| MhlI | GDGCHC | 8 cut(s) | 53, 456, 1353, 1726, 2518, 2797, 2845, 2921 |
| MlsI | TGGCCA | 1 cut(s) | 3621 |
| MluNI | TGGCCA | 1 cut(s) | 3621 |
| MmeI | TCCRAC | 4 cut(s) | 106, 2112, 3477, 3732 |
| Mox20I | TGGCCA | 1 cut(s) | 3621 |
| MroI | TCCGGA | 1 cut(s) | 66 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2785 |
| MscI | TGGCCA | 1 cut(s) | 3621 |
| Msp20I | TGGCCA | 1 cut(s) | 3621 |
| MspA1I | CMGCKG | 2 cut(s) | 1823, 2148 |
| MspCI | CTTAAG | 1 cut(s) | 1120 |
| MspI | CCGG | 4 cut(s) | 67, 3387, 3822, 3871 |
| MspR9I | CCNGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| MunI | CAATTG | 1 cut(s) | 1785 |
| Mva1269I | GAATGC | 2 cut(s) | 460, 3270 |
| MvaI | CCWGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| MvnI | CGCG | 1 cut(s) | 16 |
| NdeI | CATATG | 1 cut(s) | 983 |
| NheI | GCTAGC | 1 cut(s) | 2660 |
| NlaIV | GGNNCC | 8 cut(s) | 315, 337, 1021, 2019, 2127, 3667, 3739, 3820 |
| NmuCI | GTSAC | 5 cut(s) | 760, 1272, 1583, 2272, 2802 |
| NsbI | TGCGCA | 1 cut(s) | 1686 |
| NspI | RCATGY | 1 cut(s) | 3394 |
| NspV | TTCGAA | 1 cut(s) | 130 |
| PaeR7I | CTCGAG | 2 cut(s) | 855, 900 |
| PagI | TCATGA | 3 cut(s) | 274, 538, 1726 |
| PaqCI | CACCTGC | 1 cut(s) | 2815 |
| PceI | AGGCCT | 1 cut(s) | 685 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PctI | GAATGC | 2 cut(s) | 460, 3270 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2785 |
| PfeI | GAWTC | 7 cut(s) | 41, 490, 740, 1616, 1967, 2303, 2502 |
| Pfl23II | CGTACG | 1 cut(s) | 887 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 833, 3617 |
| PfoI | TCCNGGA | 1 cut(s) | 319 |
| PmaCI | CACGTG | 1 cut(s) | 2800 |
| PmlI | CACGTG | 1 cut(s) | 2800 |
| Ppu21I | YACGTR | 2 cut(s) | 1409, 2800 |
| PsiI | TTATAA | 1 cut(s) | 1473 |
| Psp124BI | GAGCTC | 2 cut(s) | 456, 2921 |
| Psp6I | CCWGG | 9 cut(s) | 89, 319, 1428, 1933, 2517, 2527, 2578, 2854, 2959 |
| PspCI | CACGTG | 1 cut(s) | 2800 |
| PspFI | CCCAGC | 1 cut(s) | 2810 |
| PspGI | CCWGG | 9 cut(s) | 89, 319, 1428, 1933, 2517, 2527, 2578, 2854, 2959 |
| PspLI | CGTACG | 1 cut(s) | 887 |
| PspN4I | GGNNCC | 8 cut(s) | 315, 337, 1021, 2019, 2127, 3667, 3739, 3820 |
| PspPI | GGNCC | 6 cut(s) | 1020, 1070, 1559, 1707, 2125, 2507 |
| PstI | CTGCAG | 2 cut(s) | 1660, 2572 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1420, 1664, 3179 |
| PsuI | RGATCY | 8 cut(s) | 159, 313, 362, 503, 851, 863, 1061, 2628 |
| PvuII | CAGCTG | 1 cut(s) | 1823 |
| SacI | GAGCTC | 2 cut(s) | 456, 2921 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| Sau96I | GGNCC | 6 cut(s) | 1020, 1070, 1559, 1707, 2125, 2507 |
| ScaI | AGTACT | 5 cut(s) | 352, 2974, 2986, 3061, 3073 |
| ScrFI | CCNGG | 9 cut(s) | 91, 321, 1430, 1935, 2519, 2529, 2580, 2856, 2961 |
| SduI | GDGCHC | 8 cut(s) | 53, 456, 1353, 1726, 2518, 2797, 2845, 2921 |
| SfcI | CTRYAG | 9 cut(s) | 199, 639, 651, 939, 1656, 1842, 2568, 3474, 3552 |
| Sfr274I | CTCGAG | 2 cut(s) | 855, 900 |
| SfuI | TTCGAA | 1 cut(s) | 130 |
| SinI | GGWCC | 3 cut(s) | 1070, 1559, 2507 |
| SlaI | CTCGAG | 2 cut(s) | 855, 900 |
| SmlI | CTYRAG | 5 cut(s) | 855, 900, 1120, 1168, 2079 |
| SmoI | CTYRAG | 5 cut(s) | 855, 900, 1120, 1168, 2079 |
| SpeI | ACTAGT | 2 cut(s) | 2168, 2783 |
| SseBI | AGGCCT | 1 cut(s) | 685 |
| SstI | GAGCTC | 2 cut(s) | 456, 2921 |
| StuI | AGGCCT | 1 cut(s) | 685 |
| StyD4I | CCNGG | 9 cut(s) | 89, 319, 1428, 1933, 2517, 2527, 2578, 2854, 2959 |
| StyI | CCWWGG | 3 cut(s) | 2298, 2592, 3787 |
| TaiI | ACGT | 4 cut(s) | 1411, 2360, 2802, 3290 |
| TaqI | TCGA | 6 cut(s) | 130, 174, 442, 856, 901, 3221 |
| TaqII | GACCGA | 1 cut(s) | 2495 |
| TatI | WGTACW | 8 cut(s) | 350, 617, 917, 1136, 2972, 2984, 3059, 3071 |
| TauI | GCSGC | 7 cut(s) | 60, 125, 253, 256, 784, 1292, 2355 |
| TfiI | GAWTC | 7 cut(s) | 41, 490, 740, 1616, 1967, 2303, 2502 |
| TseFI | GTSAC | 5 cut(s) | 760, 1272, 1583, 2272, 2802 |
| Tsp45I | GTSAC | 5 cut(s) | 760, 1272, 1583, 2272, 2802 |
| TspDTI | ATGAA | 9 cut(s) | 291, 648, 750, 1149, 1488, 1623, 2850, 3195, 3531 |
| TspGWI | ACGGA | 3 cut(s) | 1260, 1525, 3537 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 833, 3617 |
| Vha464I | CTTAAG | 1 cut(s) | 1120 |
| VneI | GTGCAC | 1 cut(s) | 2841 |
| VpaK11BI | GGWCC | 3 cut(s) | 1070, 1559, 2507 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1171 |
| XapI | RAATTY | 9 cut(s) | 402, 551, 1083, 1451, 2246, 2290, 2543, 2597, 3113 |
| XbaI | TCTAGA | 1 cut(s) | 1112 |
| XceI | RCATGY | 1 cut(s) | 3394 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1204, 2525, 2746 |
| XhoI | CTCGAG | 2 cut(s) | 855, 900 |
| XmaJI | CCTAGG | 1 cut(s) | 3787 |
| XmiI | GTMKAC | 3 cut(s) | 938, 3551, 3596 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2785 |
| ZrmI | AGTACT | 5 cut(s) | 352, 2974, 2986, 3061, 3073 |