Rw1G010030

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
22267131 .. 22268852
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010030.1

Sequence Viewer

Length: 1392 bp
ATGGCCCCCACTGCCAACACTAACAGCGGTAACAACATTGCTGCTACTAGTGCCGTTACCACCAGCGGTAGCAATCATTTTAGCTCAGTTTCAGCACCGTCCTTTTCAGCCGAACCTTTTTTTAAATTTTCAGTCTCTACCACAACTGAGGTGACACAAGTTCCAGAAAATTCTTCCTTGGAATCGTTAGGAGACAAGAACAAGCGAGATGGCAGTTTTGCTAATCTAAGCGGCACGTCTTTTGCTGGCACATCTGCTATCAGTGCAGGCACAGGAAGTAGCTTTTTGGGGGTTTCTGCTGCTGCTTCCTCCCCTGCTGCTACCAATCAGTTGGGTTCTACTTCTTTTAGTTCTGGAAGTGGATTCGGTCCTAGTGCCCAGGCATCACCTGGATTGTCCTTCAAATTTGAACCCTCAACTGCTTCAACTGCAGTAACGCCAGGAAGTTCTTCCTTGGAATTCATAAATGATAAGAACAAGCAAGGCGGGATCTTTGGTAGTTTAAGCAGTACCTCATCTGCTGGCACGTCTGCAACAAGTGCAAGCACATTGAGTAACAGTTTTGGGTTTTCTGCTGCTGCTTCCACACCTATCTTTACCAGTCAGTCAGTGGGTTCTGCTCTTTTTAGTGGTGGCAGTGGAACTAGTTCTAGTGCCCACGTGTCACCTGCTGGGACTGGAGCTGCATCTTTCACACAGAGTGCACCTGTTCAACCTGGTTCATCAGCTTCCAGTTCGGTATTTAATTTTGCAGGAAATACAGCTTTCTCTTCTGGGAGCTCTACACTTGGTTCTTCTACCCCCTCTTCTGAAGCCAACCCTAGCAGCTCCAGTACTGCTCCAAGTACTTTTGCCTACTTTGTTTGGAGCATCCACAGTTTCTTCTCCAAGTACCAACAGCGCATCGGTGTTTGGATTGTCCAATGGTGCATCATCAACCAGCATCCTGCATTTGGTAACTCCAACTCTATATTTGGCTTCCCTACAGCTCCCTCGGGTAATAATGATCAAATGAGTATGGAAGACAGCATGGCTGAAGACAGCATGGCTGCATCTCCGCCTCCAGTTGCAGTCTTTGGTCAACAGCCTTCCTCAACCACGCAGTCTACACCAACATTCCCAGTGTTTGGCCAGCAGCCTGTGTCAACCCCACAAACCCCCTTTGTGTTTGGAGGTTCCTCCAATGGCTTCCAGTTTCAGAGCCAACCAAACCAATCCAACTCGCAGAACCCTCCACCGTTTCAGGGTTCCAATAGTTTAGCCAACTTGCAGAACCCTGCACCATTTCAGGATAGCCTAGGTTTGACGTCCAATAGCTTCTCATTGGGTACCGGTGAGAAGTCAAATAGAAGGATTGTGAGGGTTAATCGCAACAAGAACAGGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

46.91

Weight (kDa)

7.88

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 676
AatII GACGTC 1 cut(s) 1310
Acc36I ACCTGC 1 cut(s) 676
Acc65I GGTACC 1 cut(s) 1328
AccB1I GGYRCC 1 cut(s) 1328
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccI GTMKAC 1 cut(s) 1106
AciI CCGC 5 cut(s) 27, 66, 231, 486, 1058
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 1129
AcsI RAATTY 4 cut(s) 125, 169, 404, 458
AcuI CTGAAG 2 cut(s) 831, 1056
AcvI CACGTG 1 cut(s) 661
AcyI GRCGYC 1 cut(s) 1307
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 5 cut(s) 511, 835, 847, 893, 1330
AfiI CCNNNNNNNGG 3 cut(s) 953, 1127, 1244
AflIII ACRYGT 1 cut(s) 660
AgeI ACCGGT 1 cut(s) 1331
AgsI TTSAA 4 cut(s) 403, 410, 426, 713
AhlI ACTAGT 2 cut(s) 47, 644
AjiI CACGTC 2 cut(s) 237, 528
AjnI CCWGG 4 cut(s) 378, 388, 439, 715
AluBI AGCT 9 cut(s) 84, 282, 683, 728, 764, 780, 828, 989, 1317
AluI AGCT 9 cut(s) 84, 282, 683, 728, 764, 780, 828, 989, 1317
Alw21I GWGCWC 2 cut(s) 706, 782
Alw26I GTCTC 2 cut(s) 139, 186
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 994
AoxI GGCC 2 cut(s) 3, 1129
ApaLI GTGCAC 1 cut(s) 702
ApoI RAATTY 4 cut(s) 125, 169, 404, 458
AsiGI ACCGGT 1 cut(s) 1331
Asp700I GAANNNNTTC 2 cut(s) 448, 646
Asp718I GGTACC 1 cut(s) 1328
AspA2I CCTAGG 1 cut(s) 1297
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 2 cut(s) 4, 368
AsuHPI GGTGA 4 cut(s) 163, 378, 657, 1346
AvaI CYCGRG 1 cut(s) 994
AvaII GGWCC 1 cut(s) 368
AvrII CCTAGG 1 cut(s) 1297
BaeGI GKGCMC 3 cut(s) 379, 658, 706
BalI TGGCCA 1 cut(s) 1131
BanI GGYRCC 1 cut(s) 1328
BanII GRGCYC 1 cut(s) 782
BbrPI CACGTG 1 cut(s) 661
BbsI GAAGAC 2 cut(s) 1029, 1044
Bbv12I GWGCWC 2 cut(s) 706, 782
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 4 cut(s) 380, 390, 441, 717
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 2 cut(s) 139, 186
BcuI ACTAGT 2 cut(s) 47, 644
BfaI CTAG 6 cut(s) 48, 372, 645, 651, 822, 1298
BfmI CTRYAG 2 cut(s) 429, 984
BfuAI ACCTGC 1 cut(s) 676
BlnI CCTAGG 1 cut(s) 1297
BmcAI AGTACT 2 cut(s) 835, 847
Bme1390I CCNGG 4 cut(s) 380, 390, 441, 717
Bme18I GGWCC 1 cut(s) 368
BmeT110I CYCGRG 1 cut(s) 994
BmgBI CACGTC 2 cut(s) 237, 528
BmgT120I GGNCC 2 cut(s) 4, 368
BmiI GGNNCC 4 cut(s) 6, 1177, 1249, 1330
BmrFI CCNGG 4 cut(s) 380, 390, 441, 717
BmrI ACTGGG 1 cut(s) 1115
BmsI GCATC 7 cut(s) 392, 695, 879, 912, 939, 952, 1061
BmuI ACTGGG 1 cut(s) 1115
BpiI GAAGAC 2 cut(s) 1029, 1044
BpmI CTGGAG 3 cut(s) 699, 814, 1047
BsaAI YACGTR 1 cut(s) 661
BsaHI GRCGYC 1 cut(s) 1307
BsaJI CCNNGG 5 cut(s) 177, 378, 453, 993, 1297
BsaWI WCCGGW 1 cut(s) 1331
Bsc4I CCNNNNNNNGG 3 cut(s) 953, 1127, 1244
Bse118I RCCGGY 1 cut(s) 1331
Bse1I ACTGG 7 cut(s) 600, 682, 732, 831, 1064, 1121, 1192
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 4 cut(s) 380, 390, 441, 717
BseDI CCNNGG 5 cut(s) 177, 378, 453, 993, 1297
BseGI GGATG 2 cut(s) 870, 943
BseLI CCNNNNNNNGG 3 cut(s) 953, 1127, 1244
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 99, 138
BseNI ACTGG 7 cut(s) 600, 682, 732, 831, 1064, 1121, 1192
BseSI GKGCMC 3 cut(s) 379, 658, 706
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 2 cut(s) 285, 1263
BshFI GGCC 2 cut(s) 5, 1131
BshNI GGYRCC 1 cut(s) 1328
BshTI ACCGGT 1 cut(s) 1331
BsiHKAI GWGCWC 2 cut(s) 706, 782
BsiHKCI CYCGRG 1 cut(s) 994
BsiSI CCGG 1 cut(s) 1332
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 3 cut(s) 953, 1127, 1244
BsmAI GTCTC 2 cut(s) 139, 186
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 2 cut(s) 5, 1131
BsoBI CYCGRG 1 cut(s) 994
Bsp1286I GDGCHC 4 cut(s) 379, 658, 706, 782
Bsp143I GATC 2 cut(s) 489, 1006
BspACI CCGC 5 cut(s) 27, 66, 231, 486, 1058
BspANI GGCC 2 cut(s) 5, 1131
BspCNI CTCAG 2 cut(s) 98, 139
BspLI GGNNCC 4 cut(s) 6, 1177, 1249, 1330
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 676
BspPI GGATC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 1328
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 1331
BsrI ACTGG 7 cut(s) 600, 682, 732, 831, 1064, 1121, 1192
BssAI RCCGGY 1 cut(s) 1331
BssECI CCNNGG 5 cut(s) 177, 378, 453, 993, 1297
BssMI GATC 2 cut(s) 489, 1006
BssNI GRCGYC 1 cut(s) 1307
BssT1I CCWWGG 3 cut(s) 177, 453, 1297
Bst2UI CCWGG 4 cut(s) 380, 390, 441, 717
Bst4CI ACNGT 4 cut(s) 99, 560, 878, 1239
Bst6I CTCTTC 2 cut(s) 775, 811
BstACI GRCGYC 1 cut(s) 1307
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 5 cut(s) 247, 268, 523, 544, 1133
BstDEI CTNAG 3 cut(s) 85, 147, 227
BstF5I GGATG 2 cut(s) 870, 943
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 2 cut(s) 492, 1009
BstMAI GTCTC 2 cut(s) 139, 186
BstMBI GATC 2 cut(s) 489, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 11, 50, 263, 428, 539
BstNI CCWGG 4 cut(s) 380, 390, 441, 717
BstSCI CCNGG 4 cut(s) 378, 388, 439, 715
BstSFI CTRYAG 2 cut(s) 429, 984
BstSLI GKGCMC 3 cut(s) 379, 658, 706
BstV2I GAAGAC 2 cut(s) 1029, 1044
BstX2I RGATCY 1 cut(s) 489
BstXI CCANNNNNNTGG 1 cut(s) 331
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 2 cut(s) 5, 1131
BtrI CACGTC 2 cut(s) 237, 528
BtsCI GGATG 2 cut(s) 870, 943
BtsI GCAGTG 2 cut(s) 9, 643
BtsIMutI CAGTG 5 cut(s) 9, 268, 615, 643, 1128
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 5 cut(s) 247, 268, 523, 544, 1133
CfoI GCGC 1 cut(s) 903
Cfr10I RCCGGY 1 cut(s) 1331
Cfr13I GGNCC 2 cut(s) 4, 368
CsiI ACCWGGT 1 cut(s) 715
Csp6I GTAC 5 cut(s) 510, 834, 846, 892, 1329
CspAI ACCGGT 1 cut(s) 1331
CviAII CATG 2 cut(s) 1030, 1045
CviQI GTAC 5 cut(s) 510, 834, 846, 892, 1329
DdeI CTNAG 3 cut(s) 85, 147, 227
DpnI GATC 2 cut(s) 491, 1008
DpnII GATC 2 cut(s) 489, 1006
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 1129
Eam1104I CTCTTC 2 cut(s) 775, 811
EarI CTCTTC 2 cut(s) 775, 811
EciI GGCGGA 1 cut(s) 1047
Ecl136II GAGCTC 1 cut(s) 780
Eco130I CCWWGG 3 cut(s) 177, 453, 1297
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 780
Eco57I CTGAAG 2 cut(s) 831, 1056
Eco72I CACGTG 1 cut(s) 661
Eco88I CYCGRG 1 cut(s) 994
EcoICRI GAGCTC 1 cut(s) 780
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 4 cut(s) 378, 388, 439, 715
EcoT14I CCWWGG 3 cut(s) 177, 453, 1297
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 3 cut(s) 177, 453, 1297
FaeI CATG 2 cut(s) 1033, 1048
FaiI YATR 5 cut(s) 464, 971, 1019, 1031, 1046
FaqI GGGAC 1 cut(s) 688
FatI CATG 2 cut(s) 1029, 1044
FauI CCCGC 1 cut(s) 479
FbaI TGATCA 1 cut(s) 1006
FblI GTMKAC 1 cut(s) 1106
FokI GGATG 2 cut(s) 857, 930
FriOI GRGCYC 1 cut(s) 782
FspBI CTAG 6 cut(s) 48, 372, 645, 651, 822, 1298
GlaI GCGC 1 cut(s) 902
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 3 cut(s) 699, 814, 1047
HaeIII GGCC 2 cut(s) 5, 1131
HapII CCGG 1 cut(s) 1332
HhaI GCGC 1 cut(s) 903
Hin1I GRCGYC 1 cut(s) 1307
Hin1II CATG 2 cut(s) 1033, 1048
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HincII GTYRAC 2 cut(s) 1082, 1146
HindII GTYRAC 2 cut(s) 1082, 1146
HinfI GANTC 2 cut(s) 182, 363
HpaII CCGG 1 cut(s) 1332
HphI GGTGA 4 cut(s) 163, 378, 657, 1346
Hpy166II GTNNAC 4 cut(s) 704, 1082, 1107, 1146
Hpy188I TCNGA 2 cut(s) 811, 1200
Hpy188III TCNNGA 3 cut(s) 164, 354, 1289
Hpy8I GTNNAC 4 cut(s) 704, 1082, 1107, 1146
HpyAV CCTTC 3 cut(s) 409, 1098, 1344
HpyCH4III ACNGT 4 cut(s) 99, 560, 878, 1239
HpyCH4IV ACGT 4 cut(s) 236, 527, 660, 1307
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 50, 263, 428, 539
HpyF3I CTNAG 3 cut(s) 85, 147, 227
HpySE526I ACGT 4 cut(s) 236, 527, 660, 1307
Hsp92I GRCGYC 1 cut(s) 1307
Hsp92II CATG 2 cut(s) 1033, 1048
HspAI GCGC 1 cut(s) 901
KpnI GGTACC 1 cut(s) 1332
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 2 cut(s) 489, 1006
LmnI GCTCC 6 cut(s) 680, 777, 833, 844, 867, 994
LweI GCATC 7 cut(s) 392, 695, 879, 912, 939, 952, 1061
MabI ACCWGGT 1 cut(s) 715
MaeI CTAG 6 cut(s) 48, 372, 645, 651, 822, 1298
MaeII ACGT 4 cut(s) 236, 527, 660, 1307
MaeIII GTNAC 7 cut(s) 29, 55, 151, 433, 554, 663, 956
MalI GATC 2 cut(s) 491, 1008
MboI GATC 2 cut(s) 489, 1006
MboII GAAGA 8 cut(s) 165, 441, 762, 786, 798, 874, 1034, 1049
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 4 cut(s) 379, 658, 706, 782
MlsI TGGCCA 1 cut(s) 1131
MluCI AATT 5 cut(s) 125, 169, 404, 458, 745
MluNI TGGCCA 1 cut(s) 1131
MmeI TCCRAC 2 cut(s) 987, 1242
Mox20I TGGCCA 1 cut(s) 1131
MroXI GAANNNNTTC 2 cut(s) 448, 646
MscI TGGCCA 1 cut(s) 1131
MseI TTAA 4 cut(s) 123, 503, 744, 1365
Msp20I TGGCCA 1 cut(s) 1131
MspA1I CMGCKG 2 cut(s) 27, 66
MspI CCGG 1 cut(s) 1332
MspR9I CCNGG 4 cut(s) 380, 390, 441, 717
MvaI CCWGG 4 cut(s) 380, 390, 441, 717
MwoI GCNNNNNNNGC 5 cut(s) 11, 50, 263, 428, 539
NdeII GATC 2 cut(s) 489, 1006
NlaIII CATG 2 cut(s) 1033, 1048
NlaIV GGNNCC 4 cut(s) 6, 1177, 1249, 1330
NmuCI GTSAC 2 cut(s) 151, 663
PaqCI CACCTGC 1 cut(s) 676
PdmI GAANNNNTTC 2 cut(s) 448, 646
PfeI GAWTC 2 cut(s) 182, 363
PflMI CCANNNNNTGG 1 cut(s) 1127
PinAI ACCGGT 1 cut(s) 1331
PmaCI CACGTG 1 cut(s) 661
PmlI CACGTG 1 cut(s) 661
Ppu21I YACGTR 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 782
Psp6I CCWGG 4 cut(s) 378, 388, 439, 715
PspCI CACGTG 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 4 cut(s) 378, 388, 439, 715
PspN4I GGNNCC 4 cut(s) 6, 1177, 1249, 1330
PspPI GGNCC 2 cut(s) 4, 368
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 5 cut(s) 511, 835, 847, 893, 1330
RsaNI GTAC 5 cut(s) 510, 834, 846, 892, 1329
SacI GAGCTC 1 cut(s) 782
SaqAI TTAA 4 cut(s) 123, 503, 744, 1365
Sau3AI GATC 2 cut(s) 489, 1006
Sau96I GGNCC 2 cut(s) 4, 368
ScaI AGTACT 2 cut(s) 835, 847
ScrFI CCNGG 4 cut(s) 380, 390, 441, 717
SduI GDGCHC 4 cut(s) 379, 658, 706, 782
SexAI ACCWGGT 1 cut(s) 715
SfaNI GCATC 7 cut(s) 392, 695, 879, 912, 939, 952, 1061
SfcI CTRYAG 2 cut(s) 429, 984
SinI GGWCC 1 cut(s) 368
SpeI ACTAGT 2 cut(s) 47, 644
Sse9I AATT 5 cut(s) 125, 169, 404, 458, 745
SsiI CCGC 5 cut(s) 27, 66, 231, 486, 1058
SspMI CTAG 6 cut(s) 48, 372, 645, 651, 822, 1298
SstI GAGCTC 1 cut(s) 782
StyD4I CCNGG 4 cut(s) 378, 388, 439, 715
StyI CCWWGG 3 cut(s) 177, 453, 1297
TaaI ACNGT 4 cut(s) 99, 560, 878, 1239
TaiI ACGT 4 cut(s) 239, 530, 663, 1310
TaqII GACCGA 1 cut(s) 356
TasI AATT 5 cut(s) 125, 169, 404, 458, 745
TatI WGTACW 2 cut(s) 833, 845
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 182, 363
Tru1I TTAA 4 cut(s) 123, 503, 744, 1365
Tru9I TTAA 4 cut(s) 123, 503, 744, 1365
TscAI CASTG 5 cut(s) 16, 268, 615, 643, 1128
TseFI GTSAC 2 cut(s) 151, 663
Tsp45I GTSAC 2 cut(s) 151, 663
TspDTI ATGAA 2 cut(s) 451, 711
TspRI CASTG 5 cut(s) 16, 268, 615, 643, 1128
Van91I CCANNNNNTGG 1 cut(s) 1127
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 368
XapI RAATTY 4 cut(s) 125, 169, 404, 458
XcmI CCANNNNNNNNNTGG 2 cut(s) 386, 607
XmaJI CCTAGG 1 cut(s) 1297
XmiI GTMKAC 1 cut(s) 1106
XmnI GAANNNNTTC 2 cut(s) 448, 646
XspI CTAG 6 cut(s) 48, 372, 645, 651, 822, 1298
ZraI GACGTC 1 cut(s) 1308
ZrmI AGTACT 2 cut(s) 835, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.