Nuclear pore complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10650 AT3G10650 |
| fragaria_vesca | FvH4_7g05430 FvH4_7g05440 FvH4_7g05440 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 |
| malus_domestica | MD02G1257800.v1.1 MD07G1063100.v1.1 |
| prunus_persica | Prupe.2G074800_v2.0.a1 |
| pyrus_communis | pycom02g21880 pycom07g04820 |
| rosa_chinensis | RchiOBHm_Chr1g0332241 |
| rosa_laevigata | RLG00000029683 |
| rosa_multiflora | Rmu_co8444859.1_g000001 Rmu_sc0016174.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00318320 |
| rosa_rugosa | Rorug01G0099200 |
| rosa_samantha | Rh1AG123000 Rh1BG094100 Rh1CG117600 Rh1DG128400 |
| rosa_wichuraiana | Rw1G010030 Rw1G010040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 951 |
| AarI | CACCTGC | 1 cut(s) | 2275 |
| AbsI | CCTCGAGG | 1 cut(s) | 333 |
| Acc16I | TGCGCA | 1 cut(s) | 1164 |
| Acc36I | ACCTGC | 3 cut(s) | 2275, 2479, 2569 |
| Acc65I | GGTACC | 1 cut(s) | 1495 |
| AccB1I | GGYRCC | 3 cut(s) | 301, 1495, 3281 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 311 |
| AccI | GTMKAC | 2 cut(s) | 416, 3059 |
| AclWI | GGATC | 3 cut(s) | 493, 547, 2096 |
| AcoI | YGGCCR | 1 cut(s) | 3082 |
| AcsI | RAATTY | 8 cut(s) | 29, 561, 929, 1724, 1768, 2003, 2057, 2576 |
| AcuI | CTGAAG | 4 cut(s) | 1353, 2430, 2520, 3009 |
| AcvI | CACGTG | 1 cut(s) | 2260 |
| AdeI | CACNNNGTG | 1 cut(s) | 2300 |
| AfeI | AGCGCT | 1 cut(s) | 207 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 311, 651, 1379, 1492, 2906, 3197 |
| AflII | CTTAAG | 1 cut(s) | 598 |
| AflIII | ACRYGT | 1 cut(s) | 2259 |
| AhlI | ACTAGT | 2 cut(s) | 1646, 2243 |
| AjiI | CACGTC | 1 cut(s) | 1836 |
| AjnI | CCWGG | 6 cut(s) | 906, 1411, 1977, 1987, 2038, 2314 |
| Alw21I | GWGCWC | 3 cut(s) | 1204, 2305, 2381 |
| Alw26I | GTCTC | 4 cut(s) | 197, 705, 1738, 1785 |
| Alw44I | GTGCAC | 1 cut(s) | 2301 |
| AlwI | GGATC | 3 cut(s) | 493, 547, 2096 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 898, 1142, 2642 |
| Ama87I | CYCGRG | 3 cut(s) | 333, 378, 2947 |
| Aor51HI | AGCGCT | 1 cut(s) | 207 |
| AoxI | GGCC | 6 cut(s) | 161, 498, 653, 1185, 1602, 3082 |
| ApaLI | GTGCAC | 1 cut(s) | 2301 |
| ApoI | RAATTY | 8 cut(s) | 29, 561, 929, 1724, 1768, 2003, 2057, 2576 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2047, 2245 |
| Asp718I | GGTACC | 1 cut(s) | 1495 |
| AspA2I | CCTAGG | 1 cut(s) | 3250 |
| AspLEI | GCGC | 4 cut(s) | 208, 1165, 1418, 2813 |
| AspS9I | GGNCC | 6 cut(s) | 498, 548, 1037, 1185, 1603, 1967 |
| AsuHPI | GGTGA | 8 cut(s) | 117, 597, 793, 849, 1762, 1977, 2256, 2601 |
| AvaI | CYCGRG | 3 cut(s) | 333, 378, 2947 |
| AvaII | GGWCC | 3 cut(s) | 548, 1037, 1967 |
| AvrII | CCTAGG | 1 cut(s) | 3250 |
| BaeGI | GKGCMC | 4 cut(s) | 1978, 2257, 2305, 3286 |
| BalI | TGGCCA | 1 cut(s) | 3084 |
| BanI | GGYRCC | 3 cut(s) | 301, 1495, 3281 |
| BanII | GRGCYC | 1 cut(s) | 2381 |
| BauI | CACGAG | 1 cut(s) | 1534 |
| BbrPI | CACGTG | 1 cut(s) | 2260 |
| BbsI | GAAGAC | 2 cut(s) | 2982, 2997 |
| Bbv12I | GWGCWC | 3 cut(s) | 1204, 2305, 2381 |
| BbvCI | CCTCAGC | 1 cut(s) | 2635 |
| BccI | CCATC | 5 cut(s) | 187, 448, 1265, 1802, 2899 |
| BceAI | ACGGC | 1 cut(s) | 1637 |
| BciT130I | CCWGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| BciVI | GTATCC | 3 cut(s) | 184, 913, 984 |
| BclI | TGATCA | 1 cut(s) | 2959 |
| BcoDI | GTCTC | 4 cut(s) | 197, 705, 1738, 1785 |
| BcuI | ACTAGT | 2 cut(s) | 1646, 2243 |
| BfmI | CTRYAG | 7 cut(s) | 129, 417, 1134, 1320, 2028, 2937, 3015 |
| BfoI | RGCGCY | 1 cut(s) | 209 |
| BfrI | CTTAAG | 1 cut(s) | 598 |
| BfuAI | ACCTGC | 3 cut(s) | 2275, 2479, 2569 |
| BfuI | GTATCC | 3 cut(s) | 184, 913, 984 |
| BglII | AGATCT | 1 cut(s) | 341 |
| BlnI | CCTAGG | 1 cut(s) | 3250 |
| BmcAI | AGTACT | 4 cut(s) | 2434, 2446, 2524, 2536 |
| Bme1390I | CCNGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| Bme18I | GGWCC | 3 cut(s) | 548, 1037, 1967 |
| BmeT110I | CYCGRG | 3 cut(s) | 333, 378, 2947 |
| BmgBI | CACGTC | 1 cut(s) | 1836 |
| BmgT120I | GGNCC | 6 cut(s) | 498, 548, 1037, 1185, 1603, 1967 |
| BmiI | GGNNCC | 7 cut(s) | 303, 499, 1497, 1605, 3130, 3202, 3283 |
| BmrFI | CCNGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| BmrI | ACTGGG | 1 cut(s) | 1602 |
| BmuI | ACTGGG | 1 cut(s) | 1602 |
| BpiI | GAAGAC | 2 cut(s) | 2982, 2997 |
| BpmI | CTGGAG | 4 cut(s) | 929, 1235, 2298, 2413 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2635 |
| BpuEI | CTTGAG | 1 cut(s) | 1542 |
| BsaAI | YACGTR | 2 cut(s) | 887, 2260 |
| BsaI | GGTCTC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 5 cut(s) | 1776, 1977, 2052, 2946, 3250 |
| BsaWI | WCCGGW | 1 cut(s) | 1309 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 311, 651, 1379, 1492, 2906, 3197 |
| Bse118I | RCCGGY | 1 cut(s) | 2849 |
| Bse1I | ACTGG | 8 cut(s) | 1439, 1608, 2199, 2281, 2331, 2430, 2520, 3145 |
| Bse3DI | GCAATG | 3 cut(s) | 44, 298, 1635 |
| BseBI | CCWGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| BseDI | CCNNGG | 5 cut(s) | 1776, 1977, 2052, 2946, 3250 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 311, 651, 1379, 1492, 2906, 3197 |
| BseMI | GCAATG | 3 cut(s) | 44, 298, 1635 |
| BseMII | CTCAG | 6 cut(s) | 467, 531, 1698, 1737, 2649, 3087 |
| BseNI | ACTGG | 8 cut(s) | 1439, 1608, 2199, 2281, 2331, 2430, 2520, 3145 |
| BseSI | GKGCMC | 4 cut(s) | 1978, 2257, 2305, 3286 |
| BseYI | CCCAGC | 1 cut(s) | 2270 |
| BsgI | GTGCAG | 4 cut(s) | 1884, 2367, 2730, 3216 |
| BshFI | GGCC | 6 cut(s) | 163, 500, 655, 1187, 1604, 3084 |
| BshNI | GGYRCC | 3 cut(s) | 301, 1495, 3281 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1204, 2305, 2381 |
| BsiHKCI | CYCGRG | 3 cut(s) | 333, 378, 2947 |
| BsiSI | CCGG | 2 cut(s) | 1310, 2850 |
| BsiWI | CGTACG | 1 cut(s) | 365 |
| BslFI | GGGAC | 2 cut(s) | 1469, 2287 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 311, 651, 1379, 1492, 2906, 3197 |
| BsmAI | GTCTC | 4 cut(s) | 197, 705, 1738, 1785 |
| BsmFI | GGGAC | 2 cut(s) | 1469, 2287 |
| BsmI | GAATGC | 1 cut(s) | 2733 |
| BsnI | GGCC | 6 cut(s) | 163, 500, 655, 1187, 1604, 3084 |
| Bso31I | GGTCTC | 1 cut(s) | 197 |
| BsoBI | CYCGRG | 3 cut(s) | 333, 378, 2947 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1204, 1978, 2257, 2305, 2381, 3286 |
| Bsp143I | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| BspANI | GGCC | 6 cut(s) | 163, 500, 655, 1187, 1604, 3084 |
| BspCNI | CTCAG | 6 cut(s) | 466, 530, 1697, 1738, 2648, 3086 |
| BspHI | TCATGA | 2 cut(s) | 16, 1204 |
| BspLI | GGNNCC | 7 cut(s) | 303, 499, 1497, 1605, 3130, 3202, 3283 |
| BspMAI | CTGCAG | 2 cut(s) | 1138, 2032 |
| BspMI | ACCTGC | 3 cut(s) | 2275, 2479, 2569 |
| BspPI | GGATC | 3 cut(s) | 493, 547, 2096 |
| BspT107I | GGYRCC | 3 cut(s) | 301, 1495, 3281 |
| BspTI | CTTAAG | 1 cut(s) | 598 |
| BspTNI | GGTCTC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 3 cut(s) | 44, 298, 1635 |
| BsrFI | RCCGGY | 1 cut(s) | 2849 |
| BsrI | ACTGG | 8 cut(s) | 1439, 1608, 2199, 2281, 2331, 2430, 2520, 3145 |
| BssAI | RCCGGY | 1 cut(s) | 2849 |
| BssECI | CCNNGG | 5 cut(s) | 1776, 1977, 2052, 2946, 3250 |
| BssMI | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| BssSI | CACGAG | 1 cut(s) | 1534 |
| BssT1I | CCWWGG | 3 cut(s) | 1776, 2052, 3250 |
| Bst2BI | CACGAG | 1 cut(s) | 1534 |
| Bst2UI | CCWGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| Bst6I | CTCTTC | 3 cut(s) | 2374, 2410, 2500 |
| BstAFI | CTTAAG | 1 cut(s) | 598 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1142, 1355, 2138 |
| BstBAI | YACGTR | 2 cut(s) | 887, 2260 |
| BstC8I | GCNNGC | 7 cut(s) | 138, 1846, 1867, 2122, 2143, 2901, 3086 |
| BstDEI | CTNAG | 9 cut(s) | 453, 517, 825, 864, 1684, 1746, 1826, 2635, 3073 |
| BstH2I | RGCGCY | 1 cut(s) | 209 |
| BstHHI | GCGC | 4 cut(s) | 208, 1165, 1418, 2813 |
| BstKTI | GATC | 7 cut(s) | 344, 488, 542, 801, 857, 2091, 2962 |
| BstMAI | GTCTC | 4 cut(s) | 197, 705, 1738, 1785 |
| BstMBI | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| BstNI | CCWGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| BstNSI | RCATGY | 1 cut(s) | 2857 |
| BstSCI | CCNGG | 6 cut(s) | 906, 1411, 1977, 1987, 2038, 2314 |
| BstSFI | CTRYAG | 7 cut(s) | 129, 417, 1134, 1320, 2028, 2937, 3015 |
| BstSLI | GKGCMC | 4 cut(s) | 1978, 2257, 2305, 3286 |
| BstV2I | GAAGAC | 2 cut(s) | 2982, 2997 |
| BstX2I | RGATCY | 4 cut(s) | 341, 485, 539, 2088 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 482, 1930 |
| BstYI | RGATCY | 4 cut(s) | 341, 485, 539, 2088 |
| BsuI | GTATCC | 3 cut(s) | 184, 913, 984 |
| BsuRI | GGCC | 6 cut(s) | 163, 500, 655, 1187, 1604, 3084 |
| BtrI | CACGTC | 1 cut(s) | 1836 |
| BtsI | GCAGTG | 3 cut(s) | 12, 241, 2242 |
| BveI | ACCTGC | 3 cut(s) | 2275, 2479, 2569 |
| Cac8I | GCNNGC | 7 cut(s) | 138, 1846, 1867, 2122, 2143, 2901, 3086 |
| CaiI | CAGNNNCTG | 3 cut(s) | 898, 1142, 2642 |
| CciI | TCATGA | 2 cut(s) | 16, 1204 |
| CfoI | GCGC | 4 cut(s) | 208, 1165, 1418, 2813 |
| Cfr10I | RCCGGY | 1 cut(s) | 2849 |
| Cfr13I | GGNCC | 6 cut(s) | 498, 548, 1037, 1185, 1603, 1967 |
| CseI | GACGC | 1 cut(s) | 1242 |
| CsiI | ACCWGGT | 1 cut(s) | 2314 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 645, 680, 2704, 2739 |
| DdeI | CTNAG | 9 cut(s) | 453, 517, 825, 864, 1684, 1746, 1826, 2635, 3073 |
| DpnI | GATC | 7 cut(s) | 343, 487, 541, 800, 856, 2090, 2961 |
| DpnII | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| DraI | TTTAAA | 1 cut(s) | 1723 |
| DraIII | CACNNNGTG | 1 cut(s) | 2300 |
| EaeI | YGGCCR | 1 cut(s) | 3082 |
| Eam1104I | CTCTTC | 3 cut(s) | 2374, 2410, 2500 |
| EarI | CTCTTC | 3 cut(s) | 2374, 2410, 2500 |
| EciI | GGCGGA | 1 cut(s) | 3000 |
| Ecl136II | GAGCTC | 1 cut(s) | 2379 |
| Eco130I | CCWWGG | 3 cut(s) | 1776, 2052, 3250 |
| Eco147I | AGGCCT | 1 cut(s) | 163 |
| Eco24I | GRGCYC | 1 cut(s) | 2381 |
| Eco31I | GGTCTC | 1 cut(s) | 197 |
| Eco47I | GGWCC | 3 cut(s) | 548, 1037, 1967 |
| Eco47III | AGCGCT | 1 cut(s) | 207 |
| Eco53kI | GAGCTC | 1 cut(s) | 2379 |
| Eco57I | CTGAAG | 4 cut(s) | 1353, 2430, 2520, 3009 |
| Eco72I | CACGTG | 1 cut(s) | 2260 |
| Eco88I | CYCGRG | 3 cut(s) | 333, 378, 2947 |
| EcoICRI | GAGCTC | 1 cut(s) | 2379 |
| EcoO109I | RGGNCCY | 1 cut(s) | 498 |
| EcoRI | GAATTC | 2 cut(s) | 561, 2057 |
| EcoRII | CCWGG | 6 cut(s) | 906, 1411, 1977, 1987, 2038, 2314 |
| EcoT14I | CCWWGG | 3 cut(s) | 1776, 2052, 3250 |
| EcoT38I | GRGCYC | 1 cut(s) | 2381 |
| ErhI | CCWWGG | 3 cut(s) | 1776, 2052, 3250 |
| FaqI | GGGAC | 2 cut(s) | 1469, 2287 |
| FauI | CCCGC | 1 cut(s) | 2078 |
| FauNDI | CATATG | 1 cut(s) | 461 |
| FbaI | TGATCA | 1 cut(s) | 2959 |
| FblI | GTMKAC | 2 cut(s) | 416, 3059 |
| FriOI | GRGCYC | 1 cut(s) | 2381 |
| FspI | TGCGCA | 1 cut(s) | 1164 |
| GlaI | GCGC | 4 cut(s) | 207, 1164, 1417, 2812 |
| GsaI | CCCAGC | 1 cut(s) | 2274 |
| GsuI | CTGGAG | 4 cut(s) | 929, 1235, 2298, 2413 |
| HaeII | RGCGCY | 1 cut(s) | 209 |
| HaeIII | GGCC | 6 cut(s) | 163, 500, 655, 1187, 1604, 3084 |
| HapII | CCGG | 2 cut(s) | 1310, 2850 |
| HgaI | GACGC | 1 cut(s) | 1242 |
| HhaI | GCGC | 4 cut(s) | 208, 1165, 1418, 2813 |
| Hin6I | GCGC | 4 cut(s) | 206, 1163, 1416, 2811 |
| HinP1I | GCGC | 4 cut(s) | 206, 1163, 1416, 2811 |
| HincII | GTYRAC | 3 cut(s) | 671, 3035, 3099 |
| HindII | GTYRAC | 3 cut(s) | 671, 3035, 3099 |
| HindIII | AAGCTT | 1 cut(s) | 144 |
| HinfI | GANTC | 5 cut(s) | 218, 1094, 1445, 1781, 1962 |
| HpaII | CCGG | 2 cut(s) | 1310, 2850 |
| HphI | GGTGA | 8 cut(s) | 117, 597, 793, 849, 1762, 1977, 2256, 2601 |
| Hpy166II | GTNNAC | 6 cut(s) | 417, 671, 2303, 3035, 3060, 3099 |
| Hpy8I | GTNNAC | 6 cut(s) | 417, 671, 2303, 3035, 3060, 3099 |
| HpyAV | CCTTC | 9 cut(s) | 174, 258, 504, 645, 1179, 1198, 2008, 3051, 3300 |
| HpyCH4IV | ACGT | 5 cut(s) | 886, 923, 1835, 2259, 2750 |
| HpyF3I | CTNAG | 9 cut(s) | 453, 517, 825, 864, 1684, 1746, 1826, 2635, 3073 |
| HpySE526I | ACGT | 5 cut(s) | 886, 923, 1835, 2259, 2750 |
| HspAI | GCGC | 4 cut(s) | 206, 1163, 1416, 2811 |
| KpnI | GGTACC | 1 cut(s) | 1499 |
| Ksp22I | TGATCA | 1 cut(s) | 2959 |
| Kzo9I | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| MabI | ACCWGGT | 1 cut(s) | 2314 |
| MaeII | ACGT | 5 cut(s) | 886, 923, 1835, 2259, 2750 |
| MalI | GATC | 7 cut(s) | 343, 487, 541, 800, 856, 2090, 2961 |
| MboI | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| MfeI | CAATTG | 1 cut(s) | 1263 |
| MflI | RGATCY | 4 cut(s) | 341, 485, 539, 2088 |
| MhlI | GDGCHC | 6 cut(s) | 1204, 1978, 2257, 2305, 2381, 3286 |
| MlsI | TGGCCA | 1 cut(s) | 3084 |
| MluNI | TGGCCA | 1 cut(s) | 3084 |
| MmeI | TCCRAC | 4 cut(s) | 1590, 2778, 2940, 3195 |
| Mox20I | TGGCCA | 1 cut(s) | 3084 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2047, 2245 |
| MscI | TGGCCA | 1 cut(s) | 3084 |
| Msp20I | TGGCCA | 1 cut(s) | 3084 |
| MspA1I | CMGCKG | 4 cut(s) | 1301, 1626, 1665, 1709 |
| MspCI | CTTAAG | 1 cut(s) | 598 |
| MspI | CCGG | 2 cut(s) | 1310, 2850 |
| MspR9I | CCNGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| MunI | CAATTG | 1 cut(s) | 1263 |
| Mva1269I | GAATGC | 1 cut(s) | 2733 |
| MvaI | CCWGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| NdeI | CATATG | 1 cut(s) | 461 |
| NdeII | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| NlaIV | GGNNCC | 7 cut(s) | 303, 499, 1497, 1605, 3130, 3202, 3283 |
| NmuCI | GTSAC | 5 cut(s) | 238, 750, 1061, 1750, 2262 |
| NsbI | TGCGCA | 1 cut(s) | 1164 |
| NspI | RCATGY | 1 cut(s) | 2857 |
| PaeR7I | CTCGAG | 2 cut(s) | 333, 378 |
| PagI | TCATGA | 2 cut(s) | 16, 1204 |
| PaqCI | CACCTGC | 1 cut(s) | 2275 |
| PceI | AGGCCT | 1 cut(s) | 163 |
| PctI | GAATGC | 1 cut(s) | 2733 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2047, 2245 |
| PfeI | GAWTC | 5 cut(s) | 218, 1094, 1445, 1781, 1962 |
| Pfl23II | CGTACG | 1 cut(s) | 365 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 311 |
| PmaCI | CACGTG | 1 cut(s) | 2260 |
| PmlI | CACGTG | 1 cut(s) | 2260 |
| Ppu21I | YACGTR | 2 cut(s) | 887, 2260 |
| PsiI | TTATAA | 1 cut(s) | 951 |
| Psp124BI | GAGCTC | 1 cut(s) | 2381 |
| Psp6I | CCWGG | 6 cut(s) | 906, 1411, 1977, 1987, 2038, 2314 |
| PspCI | CACGTG | 1 cut(s) | 2260 |
| PspFI | CCCAGC | 1 cut(s) | 2270 |
| PspGI | CCWGG | 6 cut(s) | 906, 1411, 1977, 1987, 2038, 2314 |
| PspLI | CGTACG | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 7 cut(s) | 303, 499, 1497, 1605, 3130, 3202, 3283 |
| PspPI | GGNCC | 6 cut(s) | 498, 548, 1037, 1185, 1603, 1967 |
| PspXI | VCTCGAGB | 1 cut(s) | 333 |
| PstI | CTGCAG | 2 cut(s) | 1138, 2032 |
| PstNI | CAGNNNCTG | 3 cut(s) | 898, 1142, 2642 |
| PsuI | RGATCY | 4 cut(s) | 341, 485, 539, 2088 |
| PvuII | CAGCTG | 2 cut(s) | 1301, 1709 |
| SacI | GAGCTC | 1 cut(s) | 2381 |
| Sau3AI | GATC | 7 cut(s) | 341, 485, 539, 798, 854, 2088, 2959 |
| Sau96I | GGNCC | 6 cut(s) | 498, 548, 1037, 1185, 1603, 1967 |
| ScaI | AGTACT | 4 cut(s) | 2434, 2446, 2524, 2536 |
| ScrFI | CCNGG | 6 cut(s) | 908, 1413, 1979, 1989, 2040, 2316 |
| SduI | GDGCHC | 6 cut(s) | 1204, 1978, 2257, 2305, 2381, 3286 |
| SexAI | ACCWGGT | 1 cut(s) | 2314 |
| SfcI | CTRYAG | 7 cut(s) | 129, 417, 1134, 1320, 2028, 2937, 3015 |
| Sfr274I | CTCGAG | 2 cut(s) | 333, 378 |
| SinI | GGWCC | 3 cut(s) | 548, 1037, 1967 |
| SlaI | CTCGAG | 2 cut(s) | 333, 378 |
| SmiI | ATTTAAAT | 1 cut(s) | 1723 |
| SmlI | CTYRAG | 4 cut(s) | 333, 378, 598, 1557 |
| SmoI | CTYRAG | 4 cut(s) | 333, 378, 598, 1557 |
| SpeI | ACTAGT | 2 cut(s) | 1646, 2243 |
| SseBI | AGGCCT | 1 cut(s) | 163 |
| SstI | GAGCTC | 1 cut(s) | 2381 |
| StuI | AGGCCT | 1 cut(s) | 163 |
| StyD4I | CCNGG | 6 cut(s) | 906, 1411, 1977, 1987, 2038, 2314 |
| StyI | CCWWGG | 3 cut(s) | 1776, 2052, 3250 |
| SwaI | ATTTAAAT | 1 cut(s) | 1723 |
| TaiI | ACGT | 5 cut(s) | 889, 926, 1838, 2262, 2753 |
| TaqI | TCGA | 4 cut(s) | 334, 379, 792, 2684 |
| TaqII | GACCGA | 1 cut(s) | 1955 |
| TatI | WGTACW | 7 cut(s) | 95, 395, 614, 2432, 2444, 2522, 2534 |
| TauI | GCSGC | 4 cut(s) | 262, 302, 770, 1833 |
| TfiI | GAWTC | 5 cut(s) | 218, 1094, 1445, 1781, 1962 |
| TseFI | GTSAC | 5 cut(s) | 238, 750, 1061, 1750, 2262 |
| Tsp45I | GTSAC | 5 cut(s) | 238, 750, 1061, 1750, 2262 |
| TspDTI | ATGAA | 7 cut(s) | 126, 228, 627, 966, 1101, 2310, 2658 |
| TspGWI | ACGGA | 2 cut(s) | 738, 1003 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 311 |
| Vha464I | CTTAAG | 1 cut(s) | 598 |
| VneI | GTGCAC | 1 cut(s) | 2301 |
| VpaK11BI | GGWCC | 3 cut(s) | 548, 1037, 1967 |
| XapI | RAATTY | 8 cut(s) | 29, 561, 929, 1724, 1768, 2003, 2057, 2576 |
| XbaI | TCTAGA | 1 cut(s) | 590 |
| XceI | RCATGY | 1 cut(s) | 2857 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 682, 1985, 2206 |
| XhoI | CTCGAG | 2 cut(s) | 333, 378 |
| XmaJI | CCTAGG | 1 cut(s) | 3250 |
| XmiI | GTMKAC | 2 cut(s) | 416, 3059 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2047, 2245 |
| ZrmI | AGTACT | 4 cut(s) | 2434, 2446, 2524, 2536 |