Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444859.1

Orthogroup ID

OG0006244

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1335

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444859.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1327 bp

atggcccccactgccaacactaacagcggtaacaacattgctgctactagtgccgttaccaccagcggtagcaatcattttagctcagtttcagcaccgtccttttcagccgaacctttttttaaattttcagtctctaccacaactgaggtgacacaagttccagaaaattcttccttggaatcgttaggagacaagaacaagcgagatggcagttttgctaatctaagcggcacgtcttttgctggcacatctgctatcagtgcaggcacaggaagtagctttttgggggtttctgctgctgcttcctcccctgctgctaccaatcagttgggttctacttcttttagttctggaagtggattcggtcctagtgcccaggcatcacctggattgtccttcaaatttgaaccctcaactgcttcaactgcagtaacgccaggaagttcttccttggaattcataaatgataagaacaagcaaggcgggatctttggtagtttaagcagtacctcatctgctggcacgtctgcaacaagtgcaagcacattgagtaacagttttgggttttctgctgctgcttccacacctatctttaccagtcagtcagtgggttctgctctttttagtggtggcagtggaactagttctagtgcccatgtgtcacctgctgggactggagctgcatctttcacacagagtgcacctgttcaacctggttcatcagcttccagttcggtatttaattttgcaggaaatacagctttctcttctgggagctctacacttggttcttctaccccctcttctgaagccaaccctagcagctccagtactgctccaagtactgtattcggttcttctaccccctcttccgaagccaaccctagcagttccagtactgctccaagtactgtattcggtagtgggtggcaacctgctacatcttcaaaatttgcttccacaccaaactctacatctttctcaccagcgtttcaattcggtgcatcctcagcctctgctgcaaccaacactacatctacttcatttggagcatcctcgacttctgctgctacttctaacagtgcagccacagtatttggaatgtcctccgcttctgctcctacgtccaacagtttgcctactttgtttggagcatccacagtttcttctccaagtaccaacagcgcatcggtgtttggattgtccaatggtgcatcatcaaccagcatgttcccctttacatcatctgccactactactaccccatcacagcctgcatttggtaactccaactctatatttggcttccctacagctccctcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05169 map03013 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

42.51

Weight (kDa)

5.24

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10650 AT3G10650
fragaria_vesca	FvH4_7g05430 FvH4_7g05440 FvH4_7g05440 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480
malus_domestica	MD02G1257800.v1.1 MD07G1063100.v1.1
prunus_persica	Prupe.2G074800_v2.0.a1
pyrus_communis	pycom02g21880 pycom07g04820
rosa_chinensis	RchiOBHm_Chr1g0332241
rosa_laevigata	RLG00000029683
rosa_multiflora	Rmu_co8444859.1_g000001 Rmu_sc0016174.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318320
rosa_rugosa	Rorug01G0099200
rosa_samantha	Rh1AG123000 Rh1BG094100 Rh1CG117600 Rh1DG128400
rosa_wichuraiana	Rw1G010030 Rw1G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	676
Acc36I	ACCTGC	2 cut(s)	676, 946
AciI	CCGC	5 cut(s)	27, 66, 231, 486, 1113
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	5 cut(s)	125, 169, 404, 458, 953
AcuI	CTGAAG	1 cut(s)	831
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	6 cut(s)	511, 835, 847, 901, 913, 1180
AfiI	CCNNNNNNNGG	1 cut(s)	1283
AgsI	TTSAA	6 cut(s)	403, 410, 426, 713, 951, 998
AhlI	ACTAGT	2 cut(s)	47, 644
AjiI	CACGTC	2 cut(s)	237, 528
AjnI	CCWGG	4 cut(s)	378, 388, 439, 715
AluBI	AGCT	8 cut(s)	84, 282, 683, 728, 764, 780, 828, 1319
AluI	AGCT	8 cut(s)	84, 282, 683, 728, 764, 780, 828, 1319
Alw21I	GWGCWC	2 cut(s)	706, 782
Alw26I	GTCTC	2 cut(s)	139, 186
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	1 cut(s)	497
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	702
ApoI	RAATTY	5 cut(s)	125, 169, 404, 458, 953
Asp700I	GAANNNNTTC	2 cut(s)	448, 646
AspLEI	GCGC	1 cut(s)	1190
AspS9I	GGNCC	2 cut(s)	4, 368
AsuHPI	GGTGA	4 cut(s)	163, 378, 657, 978
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	3 cut(s)	379, 658, 706
BanII	GRGCYC	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	706, 782
BbvCI	CCTCAGC	1 cut(s)	1012
BccI	CCATC	2 cut(s)	203, 1276
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	4 cut(s)	380, 390, 441, 717
BcoDI	GTCTC	2 cut(s)	139, 186
BcuI	ACTAGT	2 cut(s)	47, 644
BfaI	CTAG	6 cut(s)	48, 372, 645, 651, 822, 888
BfmI	CTRYAG	2 cut(s)	429, 1314
BfuAI	ACCTGC	2 cut(s)	676, 946
BmcAI	AGTACT	4 cut(s)	835, 847, 901, 913
Bme1390I	CCNGG	4 cut(s)	380, 390, 441, 717
Bme18I	GGWCC	1 cut(s)	368
BmgBI	CACGTC	2 cut(s)	237, 528
BmgT120I	GGNCC	2 cut(s)	4, 368
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	380, 390, 441, 717
BmsI	GCATC	7 cut(s)	392, 695, 1016, 1064, 1166, 1199, 1226
BpmI	CTGGAG	2 cut(s)	699, 814
Bpu10I	CCTNAGC	1 cut(s)	1012
BsaJI	CCNNGG	4 cut(s)	177, 378, 453, 1323
Bsc4I	CCNNNNNNNGG	1 cut(s)	1283
Bse1I	ACTGG	5 cut(s)	600, 682, 732, 831, 897
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	4 cut(s)	380, 390, 441, 717
BseDI	CCNNGG	4 cut(s)	177, 378, 453, 1323
BseGI	GGATG	3 cut(s)	1007, 1055, 1157
BseLI	CCNNNNNNNGG	1 cut(s)	1283
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	99, 138, 1026
BseNI	ACTGG	5 cut(s)	600, 682, 732, 831, 897
BseSI	GKGCMC	3 cut(s)	379, 658, 706
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	2 cut(s)	285, 1107
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	706, 782
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	1 cut(s)	1283
BsmAI	GTCTC	2 cut(s)	139, 186
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	4 cut(s)	379, 658, 706, 782
Bsp143I	GATC	1 cut(s)	489
BspACI	CCGC	5 cut(s)	27, 66, 231, 486, 1113
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	98, 139, 1025
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	2 cut(s)	676, 946
BspPI	GGATC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	5 cut(s)	600, 682, 732, 831, 897
BssECI	CCNNGG	4 cut(s)	177, 378, 453, 1323
BssMI	GATC	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	177, 453
Bst2UI	CCWGG	4 cut(s)	380, 390, 441, 717
Bst4CI	ACNGT	8 cut(s)	99, 560, 850, 916, 1085, 1096, 1136, 1165
Bst6I	CTCTTC	3 cut(s)	775, 811, 877
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	5 cut(s)	247, 268, 523, 544, 1278
BstDEI	CTNAG	4 cut(s)	85, 147, 227, 1012
BstF5I	GGATG	3 cut(s)	1007, 1055, 1157
BstHHI	GCGC	1 cut(s)	1190
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	2 cut(s)	139, 186
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 50, 263, 428, 539, 1013, 1022
BstNI	CCWGG	4 cut(s)	380, 390, 441, 717
BstNSI	RCATGY	1 cut(s)	1234
BstSCI	CCNGG	4 cut(s)	378, 388, 439, 715
BstSFI	CTRYAG	2 cut(s)	429, 1314
BstSLI	GKGCMC	3 cut(s)	379, 658, 706
BstX2I	RGATCY	1 cut(s)	489
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	2 cut(s)	237, 528
BtsCI	GGATG	3 cut(s)	1007, 1055, 1157
BtsI	GCAGTG	2 cut(s)	9, 643
BtsIMutI	CAGTG	5 cut(s)	9, 268, 615, 643, 1090
BveI	ACCTGC	2 cut(s)	676, 946
Cac8I	GCNNGC	5 cut(s)	247, 268, 523, 544, 1278
CaiI	CAGNNNCTG	1 cut(s)	1019
CfoI	GCGC	1 cut(s)	1190
Cfr13I	GGNCC	2 cut(s)	4, 368
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	6 cut(s)	510, 834, 846, 900, 912, 1179
CspCI	CAANNNNNGTGG	2 cut(s)	1081, 1116
CviAII	CATG	2 cut(s)	659, 1231
CviQI	GTAC	6 cut(s)	510, 834, 846, 900, 912, 1179
DdeI	CTNAG	4 cut(s)	85, 147, 227, 1012
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraI	TTTAAA	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	701
Eam1104I	CTCTTC	3 cut(s)	775, 811, 877
EarI	CTCTTC	3 cut(s)	775, 811, 877
Ecl136II	GAGCTC	1 cut(s)	780
Eco130I	CCWWGG	2 cut(s)	177, 453
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	780
Eco57I	CTGAAG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	780
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	4 cut(s)	378, 388, 439, 715
EcoT14I	CCWWGG	2 cut(s)	177, 453
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	2 cut(s)	177, 453
FaeI	CATG	2 cut(s)	662, 1234
FaiI	YATR	4 cut(s)	464, 660, 1232, 1301
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	2 cut(s)	658, 1230
FauI	CCCGC	1 cut(s)	479
FokI	GGATG	3 cut(s)	994, 1042, 1144
FriOI	GRGCYC	1 cut(s)	782
FspBI	CTAG	6 cut(s)	48, 372, 645, 651, 822, 888
GlaI	GCGC	1 cut(s)	1189
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	2 cut(s)	699, 814
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	1190
Hin1II	CATG	2 cut(s)	662, 1234
Hin6I	GCGC	1 cut(s)	1188
HinP1I	GCGC	1 cut(s)	1188
HinfI	GANTC	2 cut(s)	182, 363
HphI	GGTGA	4 cut(s)	163, 378, 657, 978
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	2 cut(s)	811, 877
Hpy188III	TCNNGA	2 cut(s)	164, 354
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	8 cut(s)	99, 560, 850, 916, 1085, 1096, 1136, 1165
HpyCH4IV	ACGT	3 cut(s)	236, 527, 1127
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 50, 263, 428, 539, 1013, 1022
HpyF3I	CTNAG	4 cut(s)	85, 147, 227, 1012
HpySE526I	ACGT	3 cut(s)	236, 527, 1127
Hsp92II	CATG	2 cut(s)	662, 1234
HspAI	GCGC	1 cut(s)	1188
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	9 cut(s)	680, 777, 833, 844, 910, 1052, 1126, 1154, 1324
LweI	GCATC	7 cut(s)	392, 695, 1016, 1064, 1166, 1199, 1226
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	6 cut(s)	48, 372, 645, 651, 822, 888
MaeII	ACGT	3 cut(s)	236, 527, 1127
MaeIII	GTNAC	7 cut(s)	29, 55, 151, 433, 554, 663, 1286
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	9 cut(s)	165, 441, 762, 786, 798, 852, 864, 939, 1161
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	4 cut(s)	379, 658, 706, 782
MluCI	AATT	7 cut(s)	125, 169, 404, 458, 745, 953, 998
MmeI	TCCRAC	2 cut(s)	1155, 1317
MroXI	GAANNNNTTC	2 cut(s)	448, 646
MseI	TTAA	3 cut(s)	123, 503, 744
MspA1I	CMGCKG	2 cut(s)	27, 66
MspR9I	CCNGG	4 cut(s)	380, 390, 441, 717
MvaI	CCWGG	4 cut(s)	380, 390, 441, 717
MwoI	GCNNNNNNNGC	7 cut(s)	11, 50, 263, 428, 539, 1013, 1022
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	2 cut(s)	662, 1234
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	151, 663
NspI	RCATGY	1 cut(s)	1234
PaqCI	CACCTGC	1 cut(s)	676
PdmI	GAANNNNTTC	2 cut(s)	448, 646
PfeI	GAWTC	2 cut(s)	182, 363
Psp124BI	GAGCTC	1 cut(s)	782
Psp6I	CCWGG	4 cut(s)	378, 388, 439, 715
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	4 cut(s)	378, 388, 439, 715
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 368
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	6 cut(s)	511, 835, 847, 901, 913, 1180
RsaNI	GTAC	6 cut(s)	510, 834, 846, 900, 912, 1179
SacI	GAGCTC	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	123, 503, 744
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	2 cut(s)	4, 368
ScaI	AGTACT	4 cut(s)	835, 847, 901, 913
ScrFI	CCNGG	4 cut(s)	380, 390, 441, 717
SduI	GDGCHC	4 cut(s)	379, 658, 706, 782
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	7 cut(s)	392, 695, 1016, 1064, 1166, 1199, 1226
SfcI	CTRYAG	2 cut(s)	429, 1314
SinI	GGWCC	1 cut(s)	368
SpeI	ACTAGT	2 cut(s)	47, 644
Sse9I	AATT	7 cut(s)	125, 169, 404, 458, 745, 953, 998
SsiI	CCGC	5 cut(s)	27, 66, 231, 486, 1113
SspMI	CTAG	6 cut(s)	48, 372, 645, 651, 822, 888
SstI	GAGCTC	1 cut(s)	782
StyD4I	CCNGG	4 cut(s)	378, 388, 439, 715
StyI	CCWWGG	2 cut(s)	177, 453
TaaI	ACNGT	8 cut(s)	99, 560, 850, 916, 1085, 1096, 1136, 1165
TaiI	ACGT	3 cut(s)	239, 530, 1130
TaqI	TCGA	1 cut(s)	1061
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	7 cut(s)	125, 169, 404, 458, 745, 953, 998
TatI	WGTACW	4 cut(s)	833, 845, 899, 911
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	182, 363
Tru1I	TTAA	3 cut(s)	123, 503, 744
Tru9I	TTAA	3 cut(s)	123, 503, 744
TscAI	CASTG	5 cut(s)	16, 268, 615, 643, 1090
TseFI	GTSAC	2 cut(s)	151, 663
Tsp45I	GTSAC	2 cut(s)	151, 663
TspDTI	ATGAA	3 cut(s)	451, 711, 1035
TspRI	CASTG	5 cut(s)	16, 268, 615, 643, 1090
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	5 cut(s)	125, 169, 404, 458, 953
XceI	RCATGY	1 cut(s)	1234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	386, 607
XmnI	GAANNNNTTC	2 cut(s)	448, 646
XspI	CTAG	6 cut(s)	48, 372, 645, 651, 822, 888
ZrmI	AGTACT	4 cut(s)	835, 847, 901, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.