Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011110

Physical Location & Seq

Genomic Coordinates Reverse (-)

7252494 .. 7258842

Gene Structure 6349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07270.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACATACAATGATGACTCCAACACGAAAACTAGACAATGTGTACCTTCTAGACACACCAGCAAAGCAATGCACCAAAACAGAGCCCTGTTTTCGACTCTGATCAATAAAATCCAAACACACCTCCAAAGAATCCAACAAATTCTCACTCTCCATATCTCTAATCGGAACCCCCATCCTCACCAGCTTCAAATCCTTCCCCGCATATTCCACCAAGTACACCACCTTCCCGCCGACGGAGGACGCCGAGGAATCATCGCCGGAGCCGCCGTCGGCGTAGACCGTCTTTATCTCCTTGGTGGGGATTGCGAGGCCCTTCTTGTACTCCGAGAAGAAGGAAATGGAGGCGGAGCTGAGAACCGAGAGGATATGAGTGACGGTGGCGCTGCCGTTTTCGAGAATTTCCACTGCGTCGGTGATGTTGCCGATGAAGAGATTCTCCCGAACAAGAACTTCTCATTCGTCCCCAGAAACCTAGAAAAAGAAGAAGAAGAAATGGCGAGCGCTCCTCCGCCGTCGTCCAAAGTGGATGCGGTGAAGCAGATTCGCAGCCACGAGGTTGCAATTGCAGAGCTCAATGCTCTTTCACCGTCCCGGACAGTGTATCAGAAGAATGGGAACTTACTTTTCCGTACGACAATCCAGAAAGCATTGGCATCTGAACAGAAACAACTAGATTTGGCTAAAGCAATCCTTGGAAAGTTGAATACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

7.19

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49245
fragaria_vesca	FvH4_7g07270 FvH4_7g07270 FvH4_7g07330 FvH4_7g07330
malus_domestica	MD07G1078800.v1.1
pyrus_communis	pycom07g06240
rosa_chinensis	RchiOBHm_Chr0c29g0501081 RchiOBHm_Chr0c29g0501131 RchiOBHm_Chr1g0337851
rosa_laevigata	RLG00000029271
rosa_multiflora	Rmu_co8518295.1_g000001 Rmu_sc0011565.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314300
rosa_samantha	Rh1AG154600 Rh1BG123500 Rh1CG145200 Rh1DG162500
rosa_wichuraiana	Rw1G012650 Rw1G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	6 cut(s)	202, 231, 267, 348, 512, 533
AcsI	RAATTY	2 cut(s)	141, 400
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	4 cut(s)	45, 219, 324, 634
AfeI	AGCGCT	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	236, 301
AgsI	TTSAA	2 cut(s)	191, 706
AluBI	AGCT	3 cut(s)	187, 353, 574
AluI	AGCT	3 cut(s)	187, 353, 574
Alw21I	GWGCWC	1 cut(s)	576
Aor51HI	AGCGCT	1 cut(s)	505
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	386, 549
ApoI	RAATTY	2 cut(s)	141, 400
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	386, 506
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	4 cut(s)	173, 428, 547, 579
BanII	GRGCYC	2 cut(s)	88, 576
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BauI	CACGAG	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	373, 561
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	3 cut(s)	254, 374, 499
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	595
BfaI	CTAG	4 cut(s)	33, 51, 476, 674
BfoI	RGCGCY	2 cut(s)	387, 507
BisI	GCNGC	3 cut(s)	267, 387, 550
BlsI	GCNGC	3 cut(s)	268, 388, 551
Bme1390I	CCNGG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	170, 265
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	2 cut(s)	520, 665
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpuMI	CCSGG	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	247, 295, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 301
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	247, 295, 694
BseGI	GGATG	2 cut(s)	175, 535
BseLI	CCNNNNNNNGG	2 cut(s)	236, 301
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	373, 561
BshFI	GGCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	261, 595
BsiWI	CGTACG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	449, 577
BslI	CCNNNNNNNGG	2 cut(s)	236, 301
BsmFI	GGGAC	2 cut(s)	449, 577
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	88, 576
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	6 cut(s)	202, 231, 267, 348, 512, 533
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	170, 265
BsrDI	GCAATG	1 cut(s)	75
BssECI	CCNNGG	3 cut(s)	247, 295, 694
BssMI	GATC	1 cut(s)	102
BssNI	GRCGYC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	554
BssT1I	CCWWGG	2 cut(s)	295, 694
Bst2BI	CACGAG	1 cut(s)	554
Bst4CI	ACNGT	4 cut(s)	284, 380, 591, 601
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	175, 535
BstH2I	RGCGCY	2 cut(s)	387, 507
BstHHI	GCGC	2 cut(s)	386, 506
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	373, 561
BsuRI	GGCC	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	175, 535
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	406, 606
Cac8I	GCNNGC	1 cut(s)	502
CfoI	GCGC	2 cut(s)	386, 506
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	2 cut(s)	252, 400
Csp6I	GTAC	4 cut(s)	44, 218, 323, 633
CviJI	RGCY	8 cut(s)	86, 187, 266, 314, 353, 552, 574, 683
CviKI_1	RGCY	8 cut(s)	86, 187, 266, 314, 353, 552, 574, 683
CviQI	GTAC	4 cut(s)	44, 218, 323, 633
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	2 cut(s)	363, 501
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	295, 694
Eco24I	GRGCYC	2 cut(s)	88, 576
Eco47III	AGCGCT	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	295, 694
EcoT38I	GRGCYC	2 cut(s)	88, 576
ErhI	CCWWGG	2 cut(s)	295, 694
FaiI	YATR	4 cut(s)	7, 156, 206, 371
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	2 cut(s)	449, 577
FauI	CCCGC	2 cut(s)	209, 238
FbaI	TGATCA	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	267, 387, 550
FokI	GGATG	2 cut(s)	162, 542
FriOI	GRGCYC	2 cut(s)	88, 576
Fsp4HI	GCNGC	3 cut(s)	267, 387, 550
FspBI	CTAG	4 cut(s)	33, 51, 476, 674
GlaI	GCGC	2 cut(s)	385, 505
GluI	GCNGC	3 cut(s)	267, 387, 550
HaeII	RGCGCY	2 cut(s)	387, 507
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	2 cut(s)	261, 595
HgaI	GACGC	2 cut(s)	252, 400
HhaI	GCGC	2 cut(s)	386, 506
Hin1I	GRCGYC	1 cut(s)	244
Hin6I	GCGC	2 cut(s)	384, 504
HinP1I	GCGC	2 cut(s)	384, 504
HinfI	GANTC	6 cut(s)	17, 97, 132, 252, 436, 544
HpaII	CCGG	2 cut(s)	261, 595
HphI	GGTGA	4 cut(s)	173, 428, 547, 579
Hpy166II	GTNNAC	3 cut(s)	44, 220, 280
Hpy188I	TCNGA	5 cut(s)	102, 168, 329, 609, 661
Hpy188III	TCNNGA	5 cut(s)	51, 397, 442, 643, 714
Hpy8I	GTNNAC	3 cut(s)	44, 220, 280
Hpy99I	CGWCG	4 cut(s)	239, 275, 416, 520
HpyAV	CCTTC	5 cut(s)	57, 206, 236, 326, 329
HpyCH4III	ACNGT	4 cut(s)	284, 380, 591, 601
HpyCH4V	TGCA	3 cut(s)	73, 563, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	244
HspAI	GCGC	2 cut(s)	384, 504
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	3 cut(s)	263, 350, 511
LpnPI	CCDG	7 cut(s)	73, 101, 197, 274, 481, 608, 656
Lsp1109I	GCAGC	2 cut(s)	373, 561
LweI	GCATC	2 cut(s)	520, 665
MaeI	CTAG	4 cut(s)	33, 51, 476, 674
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	6 cut(s)	344, 443, 497, 500, 503, 622
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	2 cut(s)	88, 576
MluCI	AATT	3 cut(s)	141, 400, 564
MlyI	GAGTC	2 cut(s)	11, 91
MmeI	TCCRAC	2 cut(s)	45, 160
MnlI	CCTC	9 cut(s)	134, 189, 233, 242, 304, 338, 358, 519, 550
MroXI	GAANNNNTTC	1 cut(s)	435
MspI	CCGG	2 cut(s)	261, 595
MspR9I	CCNGG	1 cut(s)	595
MunI	CAATTG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	595
NdeII	GATC	1 cut(s)	102
NlaIV	GGNNCC	2 cut(s)	170, 265
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	4 cut(s)	132, 252, 436, 544
Pfl23II	CGTACG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	268, 388, 551
PleI	GAGTC	2 cut(s)	11, 91
PpsI	GAGTC	2 cut(s)	11, 91
Psp124BI	GAGCTC	1 cut(s)	576
PspLI	CGTACG	1 cut(s)	632
PspN4I	GGNNCC	2 cut(s)	170, 265
PspPI	GGNCC	1 cut(s)	313
RsaI	GTAC	4 cut(s)	45, 219, 324, 634
RsaNI	GTAC	4 cut(s)	44, 218, 323, 633
SacI	GAGCTC	1 cut(s)	576
SatI	GCNGC	3 cut(s)	267, 387, 550
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	11, 91
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	2 cut(s)	88, 576
SetI	ASST	8 cut(s)	49, 126, 189, 228, 355, 477, 561, 576
SfaNI	GCATC	2 cut(s)	520, 665
Sse9I	AATT	3 cut(s)	141, 400, 564
SsiI	CCGC	6 cut(s)	202, 231, 267, 348, 512, 533
SspMI	CTAG	4 cut(s)	33, 51, 476, 674
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	593
StyI	CCWWGG	2 cut(s)	295, 694
TaaI	ACNGT	4 cut(s)	284, 380, 591, 601
TaqI	TCGA	2 cut(s)	95, 396
TasI	AATT	3 cut(s)	141, 400, 564
TatI	WGTACW	2 cut(s)	217, 322
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	4 cut(s)	132, 252, 436, 544
TscAI	CASTG	2 cut(s)	413, 606
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	386, 549
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	2 cut(s)	252, 620
TspRI	CASTG	2 cut(s)	413, 606
XapI	RAATTY	2 cut(s)	141, 400
XbaI	TCTAGA	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	4 cut(s)	33, 51, 476, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.