Rh1BG123500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011110
Physical Location & Seq
Reverse (-)
20857473 .. 20860581
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG123500.1

Sequence Viewer

Length: 261 bp
ATGGCAAGCGGTCCTCCTCCTCCTCCTCCGTCGTCGTTGAAGGCAAACACGGCAGCAGGAGACCCCAAATTCGATCTCGTGAAGCAGATTCGCAGCCACGAGGTTGCAATTGCAGAGCTCAATGCTCTTTCATCGTCCCGGACAGTGTATCAGAAGAATGGGAACTTATTTTTCCGTACAACAATCCAGAAAGCATCGGCATCTGAACAGAAACAACTAGATTTGACTAAAGCAAGCCTTGAAAAGTTGAATTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

86

Amino Acids

9.23

Weight (kDa)

9.7

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 27 - 84 4e-06 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcsI RAATTY 2 cut(s) 68, 250
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 3 cut(s) 40, 242, 250
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 53, 93
ApoI RAATTY 2 cut(s) 68, 250
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 2 cut(s) 77, 98
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 65, 105
BceAI ACGGC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 54, 94
BlsI GCNGC 2 cut(s) 55, 95
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 203, 209
BpuMI CCSGG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 54
BseRI GAGGAG 4 cut(s) 6, 9, 12, 15
BseXI GCAGC 2 cut(s) 65, 105
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 54
BssMI GATC 1 cut(s) 73
BssSI CACGAG 2 cut(s) 77, 98
Bst2BI CACGAG 2 cut(s) 77, 98
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 7, 235
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 65, 105
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 7, 235
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 177
CviJI RGCY 3 cut(s) 96, 118, 237
CviKI_1 RGCY 3 cut(s) 96, 118, 237
CviQI GTAC 1 cut(s) 177
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 120
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 54, 94
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 54, 94
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 54, 94
HapII CCGG 1 cut(s) 139
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 153, 205
Hpy188III TCNNGA 3 cut(s) 79, 187, 258
Hpy99I CGWCG 2 cut(s) 34, 37
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 107, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 42, 152, 200
Lsp1109I GCAGC 2 cut(s) 65, 105
LweI GCATC 2 cut(s) 203, 209
MaeI CTAG 1 cut(s) 218
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 166, 246
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 3 cut(s) 68, 108, 250
MnlI CCTC 6 cut(s) 24, 27, 30, 33, 36, 94
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 139
NdeII GATC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 2 cut(s) 55, 95
Psp124BI GAGCTC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 120
SatI GCNGC 2 cut(s) 54, 94
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 105, 120
SfaNI GCATC 2 cut(s) 203, 209
SinI GGWCC 1 cut(s) 11
Sse9I AATT 3 cut(s) 68, 108, 250
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 72
TasI AATT 3 cut(s) 68, 108, 250
TfiI GAWTC 1 cut(s) 88
TscAI CASTG 1 cut(s) 150
TseI GCWGC 2 cut(s) 53, 93
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 2 cut(s) 18, 164
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 68, 250
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.