Rroxscaffold_4G00314300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011110
Physical Location & Seq
Forward (+)
38291799 .. 38294915
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314300.1

Sequence Viewer

Length: 258 bp
ATGGCAAGCGGTCCTCCTCCTCCTCCGTCGTCGTTGAAGGCAAACACGGCAGCAGGAGACCCCAAATTCGATCTCGTGAAGCAGATTCGCAGCCACGAGGTTGCAATTGCAGAGCTCAATGCTCTTTCATCATCCCGGACAGTGTATCAGAAGAATGGGAACTTATTTTTCCGTACAACAATCCAGAAAGCATCGGCATCTGAACAGAAACAACTAGATTTGACCAAAGCAAGCCTTGAAAAGTTGAATTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

85

Amino Acids

9.13

Weight (kDa)

9.7

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 26 - 83 3.9e-06 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcsI RAATTY 2 cut(s) 65, 247
AfaI GTAC 1 cut(s) 175
AgsI TTSAA 3 cut(s) 37, 239, 247
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 50, 90
ApoI RAATTY 2 cut(s) 65, 247
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 136
AvaII GGWCC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 2 cut(s) 74, 95
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 62, 102
BceAI ACGGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 51, 91
BlsI GCNGC 2 cut(s) 52, 92
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 200, 206
BpuMI CCSGG 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 51
BseGI GGATG 1 cut(s) 131
BseRI GAGGAG 3 cut(s) 6, 9, 12
BseXI GCAGC 2 cut(s) 62, 102
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 51
BssMI GATC 1 cut(s) 70
BssSI CACGAG 2 cut(s) 74, 95
Bst2BI CACGAG 2 cut(s) 74, 95
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 7, 232
BstF5I GGATG 1 cut(s) 131
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 62, 102
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 7, 232
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 3 cut(s) 93, 115, 234
CviKI_1 RGCY 3 cut(s) 93, 115, 234
CviQI GTAC 1 cut(s) 174
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 117
FalI AAGNNNNNCTT 2 cut(s) 219, 251
Fnu4HI GCNGC 2 cut(s) 51, 91
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 51, 91
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 51, 91
HapII CCGG 1 cut(s) 136
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 150, 202
Hpy188III TCNNGA 3 cut(s) 76, 184, 255
Hpy99I CGWCG 2 cut(s) 31, 34
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 104, 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 39, 149, 197
Lsp1109I GCAGC 2 cut(s) 62, 102
LweI GCATC 2 cut(s) 200, 206
MaeI CTAG 1 cut(s) 215
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 163, 243
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 65, 105, 247
MnlI CCTC 5 cut(s) 24, 27, 30, 33, 91
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 136
NdeII GATC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 134
PkrI GCNGC 2 cut(s) 52, 92
Psp124BI GAGCTC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 117
SatI GCNGC 2 cut(s) 51, 91
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 117
SetI ASST 2 cut(s) 102, 117
SfaNI GCATC 2 cut(s) 200, 206
SinI GGWCC 1 cut(s) 11
Sse9I AATT 3 cut(s) 65, 105, 247
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 69
TasI AATT 3 cut(s) 65, 105, 247
TfiI GAWTC 1 cut(s) 85
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 50, 90
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 2 cut(s) 15, 161
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 65, 247
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.