Rw1G012650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011110
Physical Location & Seq
Reverse (-)
28087843 .. 28092211
4369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012650.1

Sequence Viewer

Length: 252 bp
ATGGCAAGCGGTCCTCCTCCGTCGTCGTTGAAGGCAGACACGGCAGCAGGAGACCCCAAATTCGATCTCGTGAAGCAGATTCGCAGCCACGAGGTTGCAATTGCAGAGCTCAATGCTCTTTCATCGTCCCGGACAGTGTATCAAAAGAATGGGAACTTATTTTTCCGTACAACAATCCAGAGAGCATCGGCATCTGAACAGAAACAACTAGATTTGACTAAAGCAAGCCTTGAAAAGTTGAATTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

83

Amino Acids

8.96

Weight (kDa)

9.52

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 24 - 81 9.5e-06 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcsI RAATTY 2 cut(s) 59, 241
AfaI GTAC 1 cut(s) 169
AgsI TTSAA 3 cut(s) 31, 233, 241
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 44, 84
ApoI RAATTY 2 cut(s) 59, 241
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 130
AvaII GGWCC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 2 cut(s) 68, 89
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 56, 96
BceAI ACGGC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 45, 85
BlsI GCNGC 2 cut(s) 46, 86
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 194, 200
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 56, 96
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 45
BssMI GATC 1 cut(s) 64
BssSI CACGAG 2 cut(s) 68, 89
Bst2BI CACGAG 2 cut(s) 68, 89
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 7, 226
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 56, 96
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 7, 226
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 168
CviJI RGCY 3 cut(s) 87, 109, 228
CviKI_1 RGCY 3 cut(s) 87, 109, 228
CviQI GTAC 1 cut(s) 168
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 111
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 45, 85
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 45, 85
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 45, 85
HapII CCGG 1 cut(s) 130
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 70, 178, 249
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 98, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 33, 143, 191
Lsp1109I GCAGC 2 cut(s) 56, 96
LweI GCATC 2 cut(s) 194, 200
MaeI CTAG 1 cut(s) 209
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 237
MfeI CAATTG 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 59, 99, 241
MnlI CCTC 3 cut(s) 24, 27, 85
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 2 cut(s) 46, 86
Psp124BI GAGCTC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SacI GAGCTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 45, 85
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 111
SetI ASST 2 cut(s) 96, 111
SfaNI GCATC 2 cut(s) 194, 200
SinI GGWCC 1 cut(s) 11
Sse9I AATT 3 cut(s) 59, 99, 241
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 63
TasI AATT 3 cut(s) 59, 99, 241
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 44, 84
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 2 cut(s) 9, 155
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 59, 241
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.