Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011110

Physical Location & Seq

Genomic Coordinates Reverse (-)

5520958 .. 5522099

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACCCCTCTAGTTTAGGAGCAAGAAGCTTTCTGAGCTATTATTCTCCCAGCTTCTCTAATTTTTATTTTGCAGACCAGTGGCGGAGAAGACTGAAGAAACACAAAAGAGACTCAGAGATGGCAGCTGTTCCGCCGTCATCGTTTAAGGCAAATTCTAGCTCTTCCGCGGCGGCGGACCCCAAACTCGGTCTCTTGAAGCAGATACGGAGCCACGAGGTCGCAATTGCAGAGCTCAGTGCTCTTTCATCTTCCCGGGGTGTCTATCAGAAGAATGGCAACTTGTTTTTTCGTACAACAATCGAGAAAGCATCGGCATCTGAACAAAAACAAATTGATTTGGCTAAAGCAAGACTAGGAAATCTGAATTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

126

Amino Acids

13.81

Weight (kDa)

10.23

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49245
fragaria_vesca	FvH4_7g07270 FvH4_7g07270 FvH4_7g07330 FvH4_7g07330
malus_domestica	MD07G1078800.v1.1
pyrus_communis	pycom07g06240
rosa_chinensis	RchiOBHm_Chr0c29g0501081 RchiOBHm_Chr0c29g0501131 RchiOBHm_Chr1g0337851
rosa_laevigata	RLG00000029271
rosa_multiflora	Rmu_co8518295.1_g000001 Rmu_sc0011565.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314300
rosa_samantha	Rh1AG154600 Rh1BG123500 Rh1CG145200 Rh1DG162500
rosa_wichuraiana	Rw1G012650 Rw1G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	6 cut(s)	85, 134, 168, 170, 173, 176
AcsI	RAATTY	2 cut(s)	154, 367
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	6 cut(s)	30, 39, 54, 128, 162, 235
AluI	AGCT	6 cut(s)	30, 39, 54, 128, 162, 235
Alw21I	GWGCWC	2 cut(s)	237, 244
Alw26I	GTCTC	2 cut(s)	105, 197
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	154, 367
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	256, 257
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	237, 244
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	121
BcnI	CCSGG	2 cut(s)	256, 257
BcoDI	GTCTC	2 cut(s)	105, 197
BfaI	CTAG	3 cut(s)	12, 159, 356
BisI	GCNGC	3 cut(s)	126, 171, 174
BlsI	GCNGC	3 cut(s)	127, 172, 175
Bme1390I	CCNGG	2 cut(s)	256, 257
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	180, 212
BmrFI	CCNGG	2 cut(s)	256, 257
BmsI	GCATC	2 cut(s)	320, 326
BpiI	GAAGAC	1 cut(s)	97
BpuMI	CCSGG	2 cut(s)	256, 257
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	168, 255, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	168, 255, 256
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	26, 129, 250
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	237, 244
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	105, 197
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	237, 244
BspACI	CCGC	6 cut(s)	85, 134, 168, 170, 173, 176
BspCNI	CTCAG	3 cut(s)	27, 128, 249
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	180, 212
BspQI	GCTCTTC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	168, 255, 256
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	35, 115, 236
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	170
BstMAI	GTCTC	2 cut(s)	105, 197
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	254, 255
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	86, 244
Cfr13I	GGNCC	1 cut(s)	178
Cfr42I	CCGCGG	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	294
CviJI	RGCY	8 cut(s)	30, 39, 54, 128, 162, 213, 235, 344
CviKI_1	RGCY	8 cut(s)	30, 39, 54, 128, 162, 213, 235, 344
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	3 cut(s)	35, 115, 236
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	3 cut(s)	100, 123, 191
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	126, 171, 174
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	126, 171, 174
FspBI	CTAG	3 cut(s)	12, 159, 356
GluI	GCNGC	3 cut(s)	126, 171, 174
GsaI	CCCAGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	36, 118, 270, 322, 366
Hpy188III	TCNNGA	3 cut(s)	196, 304, 375
HpyCH4V	TGCA	2 cut(s)	74, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	3 cut(s)	35, 115, 236
KspI	CCGCGG	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	20, 210
LpnPI	CCDG	3 cut(s)	64, 92, 269
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	320, 326
MaeI	CTAG	3 cut(s)	12, 159, 356
MboII	GAAGA	6 cut(s)	102, 109, 156, 243, 283, 363
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	237, 244
MluCI	AATT	5 cut(s)	61, 154, 225, 333, 367
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	19, 211
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	128, 170
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	256, 257
MunI	CAATTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	2 cut(s)	256, 257
NlaIV	GGNNCC	2 cut(s)	180, 212
PciSI	GCTCTTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	127, 172, 175
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	180, 212
PspPI	GGNCC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	237
SacII	CCGCGG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	126, 171, 174
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	256, 257
SduI	GDGCHC	2 cut(s)	237, 244
SetI	ASST	7 cut(s)	32, 41, 56, 130, 164, 222, 237
SfaNI	GCATC	2 cut(s)	320, 326
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	178
SmaI	CCCGGG	1 cut(s)	257
Sse9I	AATT	5 cut(s)	61, 154, 225, 333, 367
SsiI	CCGC	6 cut(s)	85, 134, 168, 170, 173, 176
SspMI	CTAG	3 cut(s)	12, 159, 356
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	254, 255
TaqI	TCGA	1 cut(s)	303
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	61, 154, 225, 333, 367
TauI	GCSGC	2 cut(s)	173, 176
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	86, 244
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	17, 237
TspGWI	ACGGA	1 cut(s)	223
TspMI	CCCGGG	1 cut(s)	255
TspRI	CASTG	2 cut(s)	86, 244
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	2 cut(s)	154, 367
XmaI	CCCGGG	1 cut(s)	255
XspI	CTAG	3 cut(s)	12, 159, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.