RchiOBHm_Chr1g0337851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
29830943 .. 29835864
4922 bp
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UTR
Exon/CDS
Intron
PRQ56573

Sequence Viewer

Length: 210 bp
ATGGCAAGCGCTCCTTCTCCTCCGTCGTCGTTGAAGGCAAACATGGCAGCAGGAGACCCCAAATTCGATCTCGTGAAGCAGATTGGCAGCCACGAGGTTACAATAGCAGAGCTCAATGCTCTTTCATCGTCCCGGACGGTGTATCAGAAGAATGGGAGCTTATTTTTCCATACGACAATCCAGAAAGCATCGGCATCTGAACAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.32

Weight (kDa)

9.22

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 62
AfeI AGCGCT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 2 cut(s) 112, 159
AluI AGCT 2 cut(s) 112, 159
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 47, 87
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 133
BanII GRGCYC 1 cut(s) 114
BauI CACGAG 2 cut(s) 71, 92
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 59, 99
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 48, 88
BlsI GCNGC 2 cut(s) 49, 89
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 197, 203
BpuMI CCSGG 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 59, 99
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 48
BssMI GATC 1 cut(s) 67
BssSI CACGAG 2 cut(s) 71, 92
Bst2BI CACGAG 2 cut(s) 71, 92
Bst4CI ACNGT 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 59, 99
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 11
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 90, 112, 159
CviKI_1 RGCY 3 cut(s) 90, 112, 159
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 48
Eco47III AGCGCT 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 171
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 48, 88
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 48, 88
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 48, 88
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 1 cut(s) 133
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HpaII CCGG 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 147, 199
Hpy188III TCNNGA 2 cut(s) 73, 181
Hpy99I CGWCG 2 cut(s) 28, 31
HpyAV CCTTC 2 cut(s) 24, 28
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 16, 156
LpnPI CCDG 3 cut(s) 36, 146, 194
Lsp1109I GCAGC 2 cut(s) 59, 99
LweI GCATC 2 cut(s) 197, 203
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 62
MnlI CCTC 2 cut(s) 30, 88
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 2 cut(s) 49, 89
Psp124BI GAGCTC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 2 cut(s) 48, 88
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 99, 114, 161
SfaNI GCATC 2 cut(s) 197, 203
Sse9I AATT 1 cut(s) 62
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 62
TseI GCWGC 2 cut(s) 47, 87
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 12
XapI RAATTY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.