Rw1G012670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011110
Physical Location & Seq
Reverse (-)
28133795 .. 28139703
5909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012670.1

Sequence Viewer

Length: 228 bp
ATGGCAAGCGCTCCTTCTCCTCCGTCGTCGTTGAAGGCAAACATGGCAGCTGGAGACCCCAAAGTCGATCTCGTGAAGCAGATTCGCAGCCTCGAGGTTACAATAGCAGAGCTCAATGCTCTTTCATCCCGGACGGTGTATCAGAAGAATGGGAACTTATTTTTCCATACGACAATCCAGAAAGCATCGGCATCTGAACAGAGTAGAAATTTTTCTATCAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

75

Amino Acids

8.13

Weight (kDa)

9.69

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AbsI CCTCGAGG 1 cut(s) 92
AcsI RAATTY 1 cut(s) 208
AfeI AGCGCT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 2 cut(s) 50, 112
AluI AGCT 2 cut(s) 50, 112
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 47, 87
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 92
BanII GRGCYC 1 cut(s) 114
BauI CACGAG 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 59, 99
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 48, 88
BlsI GCNGC 2 cut(s) 49, 89
Bme1390I CCNGG 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 194, 200
BpmI CTGGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 48
BseGI GGATG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 59, 99
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 48
BssMI GATC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 59, 99
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 11
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 50, 90, 112
CviKI_1 RGCY 3 cut(s) 50, 90, 112
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 48
Eco47III AGCGCT 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 168
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 48, 88
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 48, 88
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 48, 88
GsuI CTGGAG 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 1 cut(s) 130
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 144, 196
Hpy188III TCNNGA 2 cut(s) 73, 178
Hpy99I CGWCG 2 cut(s) 28, 31
HpyAV CCTTC 2 cut(s) 24, 28
HpyCH4III ACNGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 36, 143, 191
Lsp1109I GCAGC 2 cut(s) 59, 99
LweI GCATC 2 cut(s) 194, 200
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 208
MnlI CCTC 3 cut(s) 30, 88, 101
MroXI GAANNNNTTC 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 2 cut(s) 49, 89
Psp124BI GAGCTC 1 cut(s) 114
PspXI VCTCGAGB 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 2 cut(s) 48, 88
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 52, 99, 114
SfaNI GCATC 2 cut(s) 194, 200
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 208
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 66, 93
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 82
TseI GCWGC 2 cut(s) 47, 87
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 12
XapI RAATTY 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.