MD07G1078800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011110
Physical Location & Seq
Reverse (-)
7603240 .. 7605911
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1078800.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGCAGCCGTTCCGCCGTCGTCGTTTAAGGCAAATTCGAGCTCTTCCGCGGCAGTGGACCCCAAACTCGGTCTCTTGAAGCAGATACGGAGCCACGAGGTCGCAATTGCAGAGCTCGGTGCTCTTTCATCTTCCCGGGGTGTCTATCAGAAGAATGGCAACTTGTTTTTTCGTACAACAATCGAGAAAGCATCGGCATCTGAACAAAGTAACAAGTTTTGCATCAAATCTTGTGAACAAATTGATTTGGCTAAAGCAAGACTAGGAAGTCTGAATTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

95

Amino Acids

9.95

Weight (kDa)

9.56

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 267
AccII CGCG 1 cut(s) 50
AciI CCGC 3 cut(s) 14, 48, 50
AcsI RAATTY 2 cut(s) 34, 274
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 2 cut(s) 42, 115
AluI AGCT 2 cut(s) 42, 115
Alw21I GWGCWC 3 cut(s) 44, 117, 124
Alw26I GTCTC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 34, 274
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 2 cut(s) 136, 137
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 58
BanII GRGCYC 2 cut(s) 44, 117
BauI CACGAG 1 cut(s) 95
Bbv12I GWGCWC 3 cut(s) 44, 117, 124
BbvI GCAGC 1 cut(s) 17
BcnI CCSGG 2 cut(s) 136, 137
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 6, 51
BlsI GCNGC 2 cut(s) 7, 52
Bme1390I CCNGG 2 cut(s) 136, 137
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 60, 92
BmrFI CCNGG 2 cut(s) 136, 137
BmsI GCATC 3 cut(s) 200, 206, 231
BpuMI CCSGG 2 cut(s) 136, 137
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 48, 135, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 48, 135, 136
BseLI CCNNNNNNNGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 50
BsiHKAI GWGCWC 3 cut(s) 44, 117, 124
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 44, 117, 124
BspACI CCGC 3 cut(s) 14, 48, 50
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 60, 92
BspQI GCTCTTC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 48, 135, 136
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 134, 135
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 51
Cfr9I CCCGGG 1 cut(s) 135
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 5 cut(s) 8, 42, 93, 115, 251
CviKI_1 RGCY 5 cut(s) 8, 42, 93, 115, 251
CviQI GTAC 1 cut(s) 174
DrdI GACNNNNNNGTC 1 cut(s) 267
DseDI GACNNNNNNGTC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 2 cut(s) 42, 115
Eco24I GRGCYC 2 cut(s) 44, 117
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 2 cut(s) 42, 115
Eco88I CYCGRG 1 cut(s) 135
EcoICRI GAGCTC 2 cut(s) 42, 115
EcoRI GAATTC 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 44, 117
Fnu4HI GCNGC 2 cut(s) 6, 51
FriOI GRGCYC 2 cut(s) 44, 117
Fsp4HI GCNGC 2 cut(s) 6, 51
FspBI CTAG 1 cut(s) 263
GluI GCNGC 2 cut(s) 6, 51
HapII CCGG 1 cut(s) 136
HpaII CCGG 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 58, 236
Hpy188I TCNGA 3 cut(s) 150, 202, 273
Hpy188III TCNNGA 3 cut(s) 76, 184, 282
Hpy8I GTNNAC 2 cut(s) 58, 236
Hpy99I CGWCG 2 cut(s) 22, 25
HpyCH4V TGCA 2 cut(s) 110, 222
KspI CCGCGG 1 cut(s) 51
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 200, 206, 231
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 209
MboII GAAGA 4 cut(s) 36, 123, 163, 270
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 3 cut(s) 44, 117, 124
MluCI AATT 4 cut(s) 34, 105, 240, 274
MnlI CCTC 1 cut(s) 91
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 2 cut(s) 136, 137
MunI CAATTG 1 cut(s) 105
MvnI CGCG 1 cut(s) 50
NciI CCSGG 2 cut(s) 136, 137
NlaIV GGNNCC 2 cut(s) 60, 92
PciSI GCTCTTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 7, 52
Psp124BI GAGCTC 2 cut(s) 44, 117
PspN4I GGNNCC 2 cut(s) 60, 92
PspPI GGNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 2 cut(s) 44, 117
SacII CCGCGG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 6, 51
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 136, 137
SduI GDGCHC 3 cut(s) 44, 117, 124
SetI ASST 3 cut(s) 44, 102, 117
SfaNI GCATC 3 cut(s) 200, 206, 231
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 58
SmaI CCCGGG 1 cut(s) 137
Sse9I AATT 4 cut(s) 34, 105, 240, 274
SsiI CCGC 3 cut(s) 14, 48, 50
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 2 cut(s) 44, 117
StyD4I CCNGG 2 cut(s) 134, 135
TaqI TCGA 2 cut(s) 38, 183
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 34, 105, 240, 274
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 103
TspMI CCCGGG 1 cut(s) 135
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 2 cut(s) 34, 274
XmaI CCCGGG 1 cut(s) 135
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.