Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011110

Physical Location & Seq

Genomic Coordinates Forward (+)

35802549 .. 35808084

Gene Structure 5536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCACCTAGTCAATTACAATTCCATCAGATCCAGATCCAAATTAGAATCACTGAATTCATTTAAAACCTTATGTAAGAAGCCAAGAAGACGAACCTCATTTTCTTCTTTAAGATTGAGAGTGCCGGCGAAGGTGAGCGGTTGTTGTGGTGGTCTCCTCAAGCTCGGAGAAGTCGTCGGTGGTGATCCAGGACACCTCGATCACCGTAGAACCCTTAGAATCGACAACGACGAACCATTGCCTCATCAAACCGTCTATTTGACCAGGATGAGGTCATTGTTGAGTGCTACGAGTACGGCTCCTACGGCTGGCTTCCAACGGGCTTGTATTGCCGGAGCCGAGCGAGATGAAACCCAAGACAGAAAAGAAATGGCAAGCGGTCCTCCTCCTTCTCCTCCGTCGTCGTTGAAGGCAAACACGGCAGCAGGAGACCCCAAAGTCGATCTCGTGAAGCAGATTCGCAGCCACGAGGTTGCAATTGCAGAGCTCAATGCTCTTAATTTCATCGTCCCGGAGAACAGTGATGTTGAGTATGGGAAGATGATTCAGACCAGAATATTGACAAATGAGTTTGTGAGGGTTGAGGATGATGGGAATGGTTTTCATTGGGGCGATTTTCCATTTGAAAGTGAATTGAAGCGAAGTGAGGAGGAATGGTTGATTGCTGGCCAGAATGGCTTCTCAGCATTTCACTTGGAGGATAGTGGGGTGTTGTTGCTAAGGGAAGAAGTAGAAAAGGGGAAGTGGTGCTGGTATGATCGCTCTGCAAGTGGAAGATGGAATAAAAGAGATAACTTGTTTGAAGTAAAACGTGAGAAGAAGGGCGCAGGAAGTGGAAGGGGGACAGAAAAAGCTGACTATATGGATGTATTGGAAGAGAGGGAGGGCCTGAATGAAGAAGAGGATGGACAGACGGTGTATCAGAAGAATGGGAACTTATTTTTCCATACGACAATCCAGAAAGCATCGGCATCTGAACAGAGTAGACATTTTTCTATCACTTTCGAAGGTGACTTCCTCTGGCTTGGAAACAGCTCTACTGATGCAATTTTCCTTCTTCATTGTGGGTATTGGTCAGAACAACTAGATTTGGCAGAAGCAAGCCTTGGAAAGTTGAATTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

376

Amino Acids

42.08

Weight (kDa)

5.99

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49245
fragaria_vesca	FvH4_7g07270 FvH4_7g07270 FvH4_7g07330 FvH4_7g07330
malus_domestica	MD07G1078800.v1.1
pyrus_communis	pycom07g06240
rosa_chinensis	RchiOBHm_Chr0c29g0501081 RchiOBHm_Chr0c29g0501131 RchiOBHm_Chr1g0337851
rosa_laevigata	RLG00000029271
rosa_multiflora	Rmu_co8518295.1_g000001 Rmu_sc0011565.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314300
rosa_samantha	Rh1AG154600 Rh1BG123500 Rh1CG145200 Rh1DG162500
rosa_wichuraiana	Rw1G012650 Rw1G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	985
AciI	CCGC	2 cut(s)	138, 378
AclWI	GGATC	3 cut(s)	24, 30, 179
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	270, 308
AgsI	TTSAA	5 cut(s)	409, 626, 637, 803, 1117
AjnI	CCWGG	2 cut(s)	187, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AluBI	AGCT	4 cut(s)	163, 487, 854, 1035
AluI	AGCT	4 cut(s)	163, 487, 854, 1035
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	158, 423
AlwI	GGATC	3 cut(s)	24, 30, 179
AoxI	GGCC	2 cut(s)	667, 886
ApeKI	GCWGC	2 cut(s)	422, 462
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	827
AspS9I	GGNCC	2 cut(s)	380, 886
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	4 cut(s)	145, 194, 194, 1022
AsuII	TTCGAA	1 cut(s)	1005
AvaII	GGWCC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	489
BauI	CACGAG	2 cut(s)	446, 467
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	434, 474
BccI	CCATC	4 cut(s)	32, 584, 771, 899
BceAI	ACGGC	3 cut(s)	312, 321, 435
BciT130I	CCWGG	2 cut(s)	189, 265
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	158, 423
BfaI	CTAG	2 cut(s)	8, 1085
BglI	GCCNNNNNGGC	1 cut(s)	675
BisI	GCNGC	2 cut(s)	423, 463
BlsI	GCNGC	2 cut(s)	424, 464
Bme1390I	CCNGG	3 cut(s)	189, 265, 512
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	380, 886
BmiI	GGNNCC	2 cut(s)	300, 337
BmrFI	CCNGG	3 cut(s)	189, 265, 512
BmsI	GCATC	3 cut(s)	974, 980, 1033
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	34
BsaI	GGTCTC	2 cut(s)	158, 423
BsaJI	CCNNGG	1 cut(s)	1105
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 641, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 308
Bse118I	RCCGGY	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	189, 265
BseDI	CCNNGG	1 cut(s)	1105
BseGI	GGATG	4 cut(s)	273, 592, 871, 910
BseJI	GATNNNNATC	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	270, 308
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	696
BseRI	GAGGAG	4 cut(s)	146, 375, 384, 662
BseXI	GCAGC	2 cut(s)	434, 474
BshFI	GGCC	2 cut(s)	669, 888
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	125, 333, 512
BslFI	GGGAC	2 cut(s)	494, 856
BslI	CCNNNNNNNGG	2 cut(s)	270, 308
BsmAI	GTCTC	2 cut(s)	158, 423
BsmFI	GGGAC	2 cut(s)	494, 856
BsnI	GGCC	2 cut(s)	669, 888
Bso31I	GGTCTC	2 cut(s)	158, 423
Bsp119I	TTCGAA	1 cut(s)	1005
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
BspACI	CCGC	2 cut(s)	138, 378
BspANI	GGCC	2 cut(s)	669, 888
BspCNI	CTCAG	1 cut(s)	695
BspLI	GGNNCC	2 cut(s)	300, 337
BspPI	GGATC	3 cut(s)	24, 30, 179
BspT104I	TTCGAA	1 cut(s)	1005
BspTNI	GGTCTC	2 cut(s)	158, 423
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	1105
BssMI	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
BssSI	CACGAG	2 cut(s)	446, 467
BssT1I	CCWWGG	1 cut(s)	1105
Bst2BI	CACGAG	2 cut(s)	446, 467
Bst2UI	CCWGG	2 cut(s)	189, 265
Bst4CI	ACNGT	4 cut(s)	206, 253, 521, 916
Bst6I	CTCTTC	2 cut(s)	870, 894
BstBI	TTCGAA	1 cut(s)	1005
BstC8I	GCNNGC	5 cut(s)	126, 310, 376, 667, 1102
BstDEI	CTNAG	3 cut(s)	215, 682, 719
BstF5I	GGATG	4 cut(s)	273, 592, 871, 910
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	6 cut(s)	32, 38, 187, 202, 445, 760
BstMAI	GTCTC	2 cut(s)	158, 423
BstMBI	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 329, 419, 675
BstNI	CCWGG	2 cut(s)	189, 265
BstSCI	CCNGG	3 cut(s)	187, 263, 510
BstV1I	GCAGC	2 cut(s)	434, 474
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	29, 35
BstYI	RGATCY	2 cut(s)	29, 35
BsuRI	GGCC	2 cut(s)	669, 888
BtsCI	GGATG	4 cut(s)	273, 592, 871, 910
BtsIMutI	CAGTG	2 cut(s)	50, 526
Cac8I	GCNNGC	5 cut(s)	126, 310, 376, 667, 1102
CfoI	GCGC	1 cut(s)	827
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	380, 886
Csp6I	GTAC	1 cut(s)	294
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	3 cut(s)	215, 682, 719
DpnI	GATC	6 cut(s)	31, 37, 186, 201, 444, 759
DpnII	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
DraI	TTTAAA	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	870, 894
EarI	CTCTTC	2 cut(s)	870, 894
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	1105
Eco24I	GRGCYC	1 cut(s)	489
Eco31I	GGTCTC	2 cut(s)	158, 423
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	886
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	187, 263
EcoT14I	CCWWGG	1 cut(s)	1105
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	1105
FaiI	YATR	6 cut(s)	73, 534, 756, 861, 863, 948
FalI	AAGNNNNNCTT	2 cut(s)	1089, 1121
FaqI	GGGAC	2 cut(s)	494, 856
FblI	GTMKAC	1 cut(s)	985
Fnu4HI	GCNGC	2 cut(s)	423, 463
FokI	GGATG	4 cut(s)	280, 599, 878, 917
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	2 cut(s)	423, 463
FspBI	CTAG	2 cut(s)	8, 1085
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	2 cut(s)	423, 463
HaeIII	GGCC	2 cut(s)	669, 888
HapII	CCGG	3 cut(s)	125, 333, 512
HhaI	GCGC	1 cut(s)	827
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HinfI	GANTC	4 cut(s)	47, 219, 457, 544
HpaII	CCGG	3 cut(s)	125, 333, 512
HphI	GGTGA	4 cut(s)	145, 194, 194, 1022
Hpy166II	GTNNAC	1 cut(s)	986
Hpy188I	TCNGA	6 cut(s)	29, 167, 549, 924, 976, 1078
Hpy188III	TCNNGA	4 cut(s)	33, 448, 958, 1125
Hpy8I	GTNNAC	1 cut(s)	986
Hpy99I	CGWCG	4 cut(s)	179, 233, 403, 406
HpyAV	CCTTC	7 cut(s)	124, 399, 403, 814, 831, 1001, 1064
HpyCH4III	ACNGT	4 cut(s)	206, 253, 521, 916
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	5 cut(s)	4, 476, 482, 767, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 329, 419, 675
HpyF3I	CTNAG	3 cut(s)	215, 682, 719
HpySE526I	ACGT	1 cut(s)	811
HspAI	GCGC	1 cut(s)	825
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
LmnI	GCTCC	2 cut(s)	304, 335
Lsp1109I	GCAGC	2 cut(s)	434, 474
LweI	GCATC	3 cut(s)	974, 980, 1033
MaeI	CTAG	2 cut(s)	8, 1085
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	1 cut(s)	1010
MalI	GATC	6 cut(s)	31, 37, 186, 201, 444, 759
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	29, 35
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	9 cut(s)	13, 19, 41, 55, 477, 499, 632, 1047, 1117
MluNI	TGGCCA	1 cut(s)	669
MmeI	TCCRAC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	669
MroNI	GCCGGC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	3 cut(s)	63, 110, 498
Msp20I	TGGCCA	1 cut(s)	669
MspI	CCGG	3 cut(s)	125, 333, 512
MspR9I	CCNGG	3 cut(s)	189, 265, 512
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	2 cut(s)	189, 265
MwoI	GCNNNNNNNGC	4 cut(s)	305, 329, 419, 675
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
NgoMIV	GCCGGC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	300, 337
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	1010
NspV	TTCGAA	1 cut(s)	1005
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 228
PdiI	GCCGGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	4 cut(s)	47, 219, 457, 544
PfoI	TCCNGGA	2 cut(s)	187, 510
PkrI	GCNGC	2 cut(s)	424, 464
Psp124BI	GAGCTC	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	187, 263
PspGI	CCWGG	2 cut(s)	187, 263
PspN4I	GGNNCC	2 cut(s)	300, 337
PspPI	GGNCC	2 cut(s)	380, 886
PsuI	RGATCY	2 cut(s)	29, 35
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	63, 110, 498
SatI	GCNGC	2 cut(s)	423, 463
Sau3AI	GATC	6 cut(s)	29, 35, 184, 199, 442, 757
Sau96I	GGNCC	2 cut(s)	380, 886
ScrFI	CCNGG	3 cut(s)	189, 265, 512
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	3 cut(s)	974, 980, 1033
SfuI	TTCGAA	1 cut(s)	1005
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	9 cut(s)	13, 19, 41, 55, 477, 499, 632, 1047, 1117
SsiI	CCGC	2 cut(s)	138, 378
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	2 cut(s)	8, 1085
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	3 cut(s)	187, 263, 510
StyI	CCWWGG	1 cut(s)	1105
TaaI	ACNGT	4 cut(s)	206, 253, 521, 916
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	4 cut(s)	198, 222, 441, 1005
TasI	AATT	9 cut(s)	13, 19, 41, 55, 477, 499, 632, 1047, 1117
TfiI	GAWTC	4 cut(s)	47, 219, 457, 544
Tru1I	TTAA	3 cut(s)	63, 110, 498
Tru9I	TTAA	3 cut(s)	63, 110, 498
TscAI	CASTG	2 cut(s)	57, 526
TseFI	GTSAC	1 cut(s)	1010
TseI	GCWGC	2 cut(s)	422, 462
Tsp45I	GTSAC	1 cut(s)	1010
TspDTI	ATGAA	6 cut(s)	48, 363, 493, 593, 909, 1049
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	57, 526
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	2 cut(s)	8, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.