Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0011110

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCAAGCGGTCCTCCTCCGTCGTCGTTGAAGGCAAACACGGCAGCAGGAGACCCCAAATTCGATCTCGTGAAGCAGATTCGCAGCCACGAGGTTGCAATTGCAGAGCTCAATGCTCTTTCATCGTCCCGGACAGTGTATCAGAAGAATGGGAACTTATTTTCCGTACAACAATCCAGAGAGCATCGGCATCTGAACAGAAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

69

Amino Acids

7.59

Weight (kDa)

10.15

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49245
fragaria_vesca	FvH4_7g07270 FvH4_7g07270 FvH4_7g07330 FvH4_7g07330
malus_domestica	MD07G1078800.v1.1
pyrus_communis	pycom07g06240
rosa_chinensis	RchiOBHm_Chr0c29g0501081 RchiOBHm_Chr0c29g0501131 RchiOBHm_Chr1g0337851
rosa_laevigata	RLG00000029271
rosa_multiflora	Rmu_co8518295.1_g000001 Rmu_sc0011565.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314300
rosa_samantha	Rh1AG154600 Rh1BG123500 Rh1CG145200 Rh1DG162500
rosa_wichuraiana	Rw1G012650 Rw1G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	59
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	31
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	44, 84
ApoI	RAATTY	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	2 cut(s)	68, 89
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	56, 96
BceAI	ACGGC	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	208
BisI	GCNGC	2 cut(s)	45, 85
BlsI	GCNGC	2 cut(s)	46, 86
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	193, 199
BpuMI	CCSGG	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	56, 96
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	9
BspTNI	GGTCTC	1 cut(s)	45
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	2 cut(s)	68, 89
Bst2BI	CACGAG	2 cut(s)	68, 89
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	56, 96
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	167
CviJI	RGCY	2 cut(s)	87, 109
CviKI_1	RGCY	2 cut(s)	87, 109
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
FaqI	GGGAC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	45, 85
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	45, 85
FspBI	CTAG	1 cut(s)	208
GluI	GCNGC	2 cut(s)	45, 85
HapII	CCGG	1 cut(s)	130
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	144, 195
Hpy188III	TCNNGA	2 cut(s)	70, 177
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	98, 104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	3 cut(s)	33, 143, 190
Lsp1109I	GCAGC	2 cut(s)	56, 96
LweI	GCATC	2 cut(s)	193, 199
MaeI	CTAG	1 cut(s)	208
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	157
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	59, 99
MnlI	CCTC	3 cut(s)	24, 27, 85
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	46, 86
Psp124BI	GAGCTC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	45, 85
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	2 cut(s)	96, 111
SfaNI	GCATC	2 cut(s)	193, 199
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	59, 99
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	59, 99
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	2 cut(s)	44, 84
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	2 cut(s)	9, 154
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	59
XspI	CTAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.