FvH4_7g07890

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008289
Physical Location & Seq
Forward (+)
7776997 .. 7785723
8727 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07890.t1

Sequence Viewer

Length: 1176 bp
ATGGCCTCACTGCTCCACTCACCGCCTCTCTCCTCTCGCACTCTCCTTCCTCCATACTCATCTCCCTCTCCCTCATTCCCAACACGCTTCAGGTGTAGTGTGGGGGAGCCTCTGAAATACGCGAATGGGAAGCCGAGCATTCCCCTCCTCCGCAGCGATGAGATGGTCCCTAATTTCCTCACCAGACATGCGCTCACTACAGCTACCAAGGATGACACCAGGCTCCGCATATTCTCCGGTACCGCTAATCCGTCCCTCTCTCAGGAAATTGCATGCTACATGGGTCTTGAACTTGGAAAGATTAAGATAAAGCGCTTTGCTGATGGAGAGATATATGTTCAGTTGCAAGAAAGTGTCAGAGGGTGTGATGTATATCTCGTGCAACCGACATGTCCTCCTGCAAATGAGAATCTAATGGAGCTTCTAATAATGATTGATGCATGTCGAAGGGCGTCAGCCAAGAACATTACTGCTGTGATTCCATATTTTGGATATGCCAGGGCTGACAGAAAGACTCAAGGGCGTGAATCTATTGCTGCCAAACTTGTTGCAAATTTGATCACCGAAGCTGGTGCAAATCGTGTTCTTGCGTGTGATCTTCATTCCGGTCAATCGATGGGATACTTTGATATTCCTGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTACCTCGCCAGCAAGACTATCTGTTCTGATGATTTGGTAGTGGTCTCACCAGATGTTGGGGGTGTTGCTCGAGCCCGTGCTTTTGCAAAAAAGTTATCTGATGCTCCTTTGGCAATTGTTGATAAAAGGCGTCATGGGCACAATGTGGCAGAGGTGATGAATTTGATAGGTGACGTGAAGGGAAAAGTAGCCGTCATGGTTGATGACATGATTGATACAGCCGGGACTATTTCTAAAGGTGCAGAATTACTACATCAAGAGGGGGCCAGGGAAGTCTATGCGTGCAGTACACATGCTGTTTTTAGTCCTCCTGCTATAGAGAGGCTGTCAAGCGGTTTGTTCCAAGAGGTGATCATAACAAATACTATTCCAGTATCTGAGCAGAACTATTTTCCCCAGCTAACTGTCCTGTCAGTTGCAAATCTTCTGGGAGAGACCATATGGCGTGTACATGATGACTGTTCTGGTGGCTTTGAACCCTATTCCACCTTGGGCATTGATTGA

Protein Analysis

392

Amino Acids

42.5

Weight (kDa)

6.16

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 75 - 191 9.5e-53 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 235 - 322 3.5e-17 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 276 - 379 9.8e-23 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AccB7I CCANNNNNTGG 2 cut(s) 488, 728
AccII CGCG 1 cut(s) 122
AciI CCGC 5 cut(s) 23, 151, 226, 243, 1005
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 2 cut(s) 553, 832
AcuI CTGAAG 1 cut(s) 73
AcyI GRCGYC 2 cut(s) 452, 802
AdeI CACNNNGTG 1 cut(s) 817
AfaI GTAC 3 cut(s) 241, 961, 1122
AfeI AGCGCT 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 262, 488, 728
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 2 cut(s) 290, 1148
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 3 cut(s) 218, 497, 938
AluBI AGCT 4 cut(s) 203, 421, 569, 1072
AluI AGCT 4 cut(s) 203, 421, 569, 1072
Alw26I GTCTC 2 cut(s) 721, 1100
AlwI GGATC 1 cut(s) 648
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 741
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 2 cut(s) 3, 936
ApeKI GCWGC 2 cut(s) 153, 536
ApoI RAATTY 2 cut(s) 553, 832
Asp718I GGTACC 1 cut(s) 239
AspLEI GCGC 2 cut(s) 193, 315
AspS9I GGNCC 2 cut(s) 166, 936
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 7 cut(s) 12, 172, 553, 711, 838, 854, 1033
AvaI CYCGRG 1 cut(s) 741
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 813
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 377
BbvI GCAGC 2 cut(s) 165, 523
BccI CCATC 3 cut(s) 157, 317, 610
BceAI ACGGC 1 cut(s) 848
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 3 cut(s) 220, 499, 940
BciVI GTATCC 1 cut(s) 614
BclI TGATCA 2 cut(s) 558, 1023
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 2 cut(s) 721, 1100
BfmI CTRYAG 2 cut(s) 198, 987
BfoI RGCGCY 1 cut(s) 316
BfuI GTATCC 1 cut(s) 614
BisI GCNGC 2 cut(s) 154, 537
BlsI GCNGC 2 cut(s) 155, 538
Bme1390I CCNGG 4 cut(s) 220, 499, 895, 940
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 741
BmgBI CACGTC 1 cut(s) 847
BmgT120I GGNCC 2 cut(s) 166, 936
BmiI GGNNCC 5 cut(s) 108, 168, 224, 241, 937
BmrFI CCNGG 4 cut(s) 220, 499, 895, 940
BmsI GCATC 2 cut(s) 427, 763
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 895
Bsa29I ATCGAT 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 372
BsaHI GRCGYC 2 cut(s) 452, 802
BsaI GGTCTC 2 cut(s) 721, 1100
BsaJI CCNNGG 4 cut(s) 207, 498, 939, 1161
BsaWI WCCGGW 2 cut(s) 236, 605
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 488, 728
Bse1I ACTGG 1 cut(s) 1043
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 3 cut(s) 220, 499, 940
BseCI ATCGAT 1 cut(s) 614
BseDI CCNNGG 4 cut(s) 207, 498, 939, 1161
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 262, 488, 728
BseMII CTCAG 2 cut(s) 275, 1041
BseNI ACTGG 1 cut(s) 1043
BseRI GAGGAG 2 cut(s) 22, 137
BseSI GKGCMC 1 cut(s) 813
BseXI GCAGC 2 cut(s) 165, 523
BseYI CCCAGC 1 cut(s) 1068
BsgI GTGCAG 2 cut(s) 933, 976
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 5, 938
BshNI GGYRCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 741
BsiSI CCGG 3 cut(s) 237, 606, 894
BslFI GGGAC 3 cut(s) 152, 238, 910
BslI CCNNNNNNNGG 3 cut(s) 262, 488, 728
BsmAI GTCTC 2 cut(s) 721, 1100
BsmFI GGGAC 3 cut(s) 152, 238, 910
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 2 cut(s) 5, 938
Bso31I GGTCTC 2 cut(s) 721, 1100
BsoBI CYCGRG 1 cut(s) 741
Bsp1286I GDGCHC 2 cut(s) 748, 813
Bsp1407I TGTACA 1 cut(s) 1120
Bsp143I GATC 4 cut(s) 558, 595, 640, 1023
BspACI CCGC 5 cut(s) 23, 151, 226, 243, 1005
BspANI GGCC 2 cut(s) 5, 938
BspCNI CTCAG 2 cut(s) 274, 1042
BspDI ATCGAT 1 cut(s) 614
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 5 cut(s) 108, 168, 224, 241, 937
BspPI GGATC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 2 cut(s) 721, 1100
BsrGI TGTACA 1 cut(s) 1120
BsrI ACTGG 1 cut(s) 1043
BssECI CCNNGG 4 cut(s) 207, 498, 939, 1161
BssMI GATC 4 cut(s) 558, 595, 640, 1023
BssNI GRCGYC 2 cut(s) 452, 802
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 207, 1161
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 3 cut(s) 220, 499, 940
Bst4CI ACNGT 2 cut(s) 1078, 1133
BstACI GRCGYC 2 cut(s) 452, 802
BstAUI TGTACA 1 cut(s) 1120
BstC8I GCNNGC 3 cut(s) 274, 682, 955
BstDEI CTNAG 2 cut(s) 261, 1050
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 193, 315
BstKTI GATC 4 cut(s) 561, 598, 643, 1026
BstMAI GTCTC 2 cut(s) 721, 1100
BstMBI GATC 4 cut(s) 558, 595, 640, 1023
BstMWI GCNNNNNNNGC 2 cut(s) 782, 808
BstNI CCWGG 3 cut(s) 220, 499, 940
BstNSI RCATGY 5 cut(s) 191, 276, 393, 444, 968
BstSCI CCNGG 4 cut(s) 218, 497, 893, 938
BstSFI CTRYAG 2 cut(s) 198, 987
BstSLI GKGCMC 1 cut(s) 813
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 165, 523
Bsu15I ATCGAT 1 cut(s) 614
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 5, 938
BsuTUI ATCGAT 1 cut(s) 614
BtgZI GCGATG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 274, 682, 955
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 2 cut(s) 193, 315
Cfr13I GGNCC 2 cut(s) 166, 936
ClaI ATCGAT 1 cut(s) 614
CseI GACGC 2 cut(s) 441, 791
Csp6I GTAC 3 cut(s) 240, 960, 1121
CviQI GTAC 3 cut(s) 240, 960, 1121
DdeI CTNAG 2 cut(s) 261, 1050
DpnI GATC 4 cut(s) 560, 597, 642, 1025
DpnII GATC 4 cut(s) 558, 595, 640, 1023
DraIII CACNNNGTG 1 cut(s) 817
Eco130I CCWWGG 2 cut(s) 207, 1161
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 2 cut(s) 721, 1100
Eco47I GGWCC 1 cut(s) 166
Eco47III AGCGCT 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 741
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 218, 497, 938
EcoT14I CCWWGG 2 cut(s) 207, 1161
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 2 cut(s) 207, 1161
FaqI GGGAC 3 cut(s) 152, 238, 910
FauNDI CATATG 1 cut(s) 1112
FbaI TGATCA 2 cut(s) 558, 1023
Fnu4HI GCNGC 2 cut(s) 154, 537
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 2 cut(s) 154, 537
GlaI GCGC 2 cut(s) 192, 314
GluI GCNGC 2 cut(s) 154, 537
GsaI CCCAGC 1 cut(s) 1072
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 2 cut(s) 5, 938
HapII CCGG 3 cut(s) 237, 606, 894
HgaI GACGC 2 cut(s) 441, 791
HhaI GCGC 2 cut(s) 193, 315
Hin1I GRCGYC 2 cut(s) 452, 802
Hin6I GCGC 2 cut(s) 191, 313
HinP1I GCGC 2 cut(s) 191, 313
HinfI GANTC 4 cut(s) 409, 478, 514, 527
HpaII CCGG 3 cut(s) 237, 606, 894
HphI GGTGA 7 cut(s) 12, 172, 553, 711, 838, 854, 1033
Hpy166II GTNNAC 2 cut(s) 962, 1121
Hpy188I TCNGA 5 cut(s) 114, 359, 700, 772, 1051
Hpy188III TCNNGA 3 cut(s) 263, 287, 929
Hpy8I GTNNAC 2 cut(s) 962, 1121
HpyAV CCTTC 3 cut(s) 56, 441, 844
HpyCH4III ACNGT 2 cut(s) 1078, 1133
HpyCH4IV ACGT 1 cut(s) 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 782, 808
HpyF3I CTNAG 2 cut(s) 261, 1050
HpySE526I ACGT 1 cut(s) 846
Hsp92I GRCGYC 2 cut(s) 452, 802
HspAI GCGC 2 cut(s) 191, 313
KpnI GGTACC 1 cut(s) 243
Ksp22I TGATCA 2 cut(s) 558, 1023
Kzo9I GATC 4 cut(s) 558, 595, 640, 1023
LmnI GCTCC 5 cut(s) 18, 106, 228, 418, 781
Lsp1109I GCAGC 2 cut(s) 165, 523
LweI GCATC 2 cut(s) 427, 763
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 1 cut(s) 842
MalI GATC 4 cut(s) 560, 597, 642, 1025
MboI GATC 4 cut(s) 558, 595, 640, 1023
MboII GAAGA 2 cut(s) 590, 1088
MfeI CAATTG 1 cut(s) 786
MhlI GDGCHC 2 cut(s) 748, 813
MluCI AATT 6 cut(s) 172, 267, 553, 786, 832, 917
MlyI GAGTC 1 cut(s) 508
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 3 cut(s) 237, 606, 894
MspR9I CCNGG 4 cut(s) 220, 499, 895, 940
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 3 cut(s) 220, 499, 940
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 782, 808
NciI CCSGG 1 cut(s) 895
NdeI CATATG 1 cut(s) 1112
NdeII GATC 4 cut(s) 558, 595, 640, 1023
NlaIV GGNNCC 5 cut(s) 108, 168, 224, 241, 937
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 842
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 5 cut(s) 191, 276, 393, 444, 968
PaeI GCATGC 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 741
PciI ACATGT 1 cut(s) 389
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 3 cut(s) 409, 478, 527
PflMI CCANNNNNTGG 2 cut(s) 488, 728
PkrI GCNGC 2 cut(s) 155, 538
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PscI ACATGT 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 218, 497, 938
PspFI CCCAGC 1 cut(s) 1068
PspGI CCWGG 3 cut(s) 218, 497, 938
PspN4I GGNNCC 5 cut(s) 108, 168, 224, 241, 937
PspPI GGNCC 2 cut(s) 166, 936
PspXI VCTCGAGB 1 cut(s) 741
PstNI CAGNNNCTG 1 cut(s) 1049
RsaI GTAC 3 cut(s) 241, 961, 1122
RsaNI GTAC 3 cut(s) 240, 960, 1121
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 154, 537
Sau3AI GATC 4 cut(s) 558, 595, 640, 1023
Sau96I GGNCC 2 cut(s) 166, 936
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 4 cut(s) 220, 499, 895, 940
SduI GDGCHC 2 cut(s) 748, 813
SfaNI GCATC 2 cut(s) 427, 763
SfcI CTRYAG 2 cut(s) 198, 987
Sfr274I CTCGAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 741
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 516, 741
SmoI CTYRAG 2 cut(s) 516, 741
SphI GCATGC 1 cut(s) 276
Sse9I AATT 6 cut(s) 172, 267, 553, 786, 832, 917
SsiI CCGC 5 cut(s) 23, 151, 226, 243, 1005
StyD4I CCNGG 4 cut(s) 218, 497, 893, 938
StyI CCWWGG 2 cut(s) 207, 1161
TaaI ACNGT 2 cut(s) 1078, 1133
TaiI ACGT 1 cut(s) 849
TaqI TCGA 3 cut(s) 445, 614, 742
TasI AATT 6 cut(s) 172, 267, 553, 786, 832, 917
TatI WGTACW 2 cut(s) 959, 1120
TfiI GAWTC 3 cut(s) 409, 478, 527
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 2 cut(s) 153, 536
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 2 cut(s) 590, 845
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 15
Van91I CCANNNNNTGG 2 cut(s) 488, 728
VpaK11BI GGWCC 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 2 cut(s) 553, 832
XceI RCATGY 5 cut(s) 191, 276, 393, 444, 968
XhoI CTCGAG 1 cut(s) 741
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.