Rh1BG138900

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008289
Physical Location & Seq
Forward (+)
23098169 .. 23109643
11475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG138900.1

Sequence Viewer

Length: 879 bp
ATGGGTCTGGAACTTGGAAAGATTAAGATAAAGCGGTTTGCTGATGGAGAGATATATGTTCAGTTGCAAGAAAGTGTCAGAGGGTGTGATGTATATCTTGTGCAACCAACATGTCCTCCTGCAAATGAGAATCTAATGGAGCTTCTGATAATGATTGATGCATGTCGAAGGGCGTCAGCCAAGAACATTACTGCTGTGATTCCATATTTTGGATATGCCAGGGCTGATAGAAAGACTCAAGGACGTGAATCTATTGCTGCCAAACTTGTTGCAAATTTAATCACTGAAGCGGGTGCAAATCGTGTTCTTGCGTGTGATCTTCATTCTGGTCAATCGATGGGATATTTTGATATTCCTGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTACCTTGCCAGCAAGACTATCTGTTCTGATGATTTGGTAGTGGTCTCACCGGATGTTGGGGGTGTTGCTAGAGCCCGTGCTTTTGCGAAAAAGTTATCTGACGCTCCTCTGGCAATTGTTGATAAAAGACGTCATGTGCACAATGTCGCAGAGGTGATGAATTTGATAGGTGATGTGAAGGGAAAAGTAGCCGTCATGGTTGATGACATGATTGATACAGCTGGGACTATTTCCAAAGGTGCAGAGTTACTACATCAAGAGGGTGCCAGGGAAGTCTATGCGTGCAGTACACATGCTGTTTTTAGTCCTCCTGCCATAGAGAGGCTGTCAAGCGGTTTGTTCCAAGAGGTGATCATAACAAATACTATTCCAGTGTCTGAGCAGAACTATTTTCCCCAGCTAACTGTCCTGTCAGTGGCAAATCTTCTGGGAGAGACCATATGGCGTGTACATGATGACTGTTCTGTGAGTAGCATATTTCAGTAA

Protein Analysis

292

Amino Acids

31.77

Weight (kDa)

5.66

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 2 - 98 6.3e-46 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 142 - 229 9.2e-17 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 183 - 291 1.5e-24 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 526
AccB1I GGYRCC 1 cut(s) 656
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 3 cut(s) 34, 290, 726
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 274, 553
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 2 cut(s) 173, 523
AfaI GTAC 2 cut(s) 682, 843
AfiI CCNNNNNNNGG 4 cut(s) 209, 449, 714, 808
AflIII ACRYGT 1 cut(s) 110
AjiI CACGTC 1 cut(s) 245
AjnI CCWGG 2 cut(s) 218, 659
AluBI AGCT 3 cut(s) 142, 614, 793
AluI AGCT 3 cut(s) 142, 614, 793
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 442, 821
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 1 cut(s) 369
AlwNI CAGNNNCTG 1 cut(s) 770
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 274, 553
AsuHPI GGTGA 4 cut(s) 432, 559, 575, 754
BaeGI GKGCMC 1 cut(s) 534
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 38, 331
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 2 cut(s) 220, 661
BclI TGATCA 1 cut(s) 744
BcoDI GTCTC 2 cut(s) 442, 821
BfaI CTAG 1 cut(s) 462
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 220, 661
BmgBI CACGTC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 658
BmrFI CCNGG 2 cut(s) 220, 661
BmsI GCATC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 2 cut(s) 173, 523
BsaI GGTCTC 2 cut(s) 442, 821
BsaJI CCNNGG 2 cut(s) 219, 660
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 449, 714, 808
Bse1I ACTGG 1 cut(s) 764
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 220, 661
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 219, 660
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 4 cut(s) 209, 449, 714, 808
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 1 cut(s) 764
BseRI GAGGAG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 2 cut(s) 614, 789
BsgI GTGCAG 2 cut(s) 654, 697
BshNI GGYRCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 4 cut(s) 209, 449, 714, 808
BsmAI GTCTC 2 cut(s) 442, 821
BsmFI GGGAC 1 cut(s) 631
Bso31I GGTCTC 2 cut(s) 442, 821
Bsp1286I GDGCHC 2 cut(s) 469, 534
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 3 cut(s) 316, 361, 744
BspACI CCGC 3 cut(s) 34, 290, 726
BspCNI CTCAG 1 cut(s) 763
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 658
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 2 cut(s) 442, 821
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 1 cut(s) 764
BssECI CCNNGG 2 cut(s) 219, 660
BssMI GATC 3 cut(s) 316, 361, 744
BssNI GRCGYC 2 cut(s) 173, 523
Bst2UI CCWGG 2 cut(s) 220, 661
Bst4CI ACNGT 2 cut(s) 799, 854
BstACI GRCGYC 2 cut(s) 173, 523
BstAUI TGTACA 1 cut(s) 841
BstC8I GCNNGC 2 cut(s) 403, 676
BstDEI CTNAG 1 cut(s) 771
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 3 cut(s) 319, 364, 747
BstMAI GTCTC 2 cut(s) 442, 821
BstMBI GATC 3 cut(s) 316, 361, 744
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNI CCWGG 2 cut(s) 220, 661
BstNSI RCATGY 3 cut(s) 114, 165, 689
BstSCI CCNGG 2 cut(s) 218, 659
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 282, 771, 813
Cac8I GCNNGC 2 cut(s) 403, 676
CaiI CAGNNNCTG 1 cut(s) 770
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 2 cut(s) 162, 503
Csp6I GTAC 2 cut(s) 681, 842
CviAII CATG 8 cut(s) 111, 162, 365, 527, 589, 601, 686, 845
CviJI RGCY 9 cut(s) 142, 179, 224, 379, 467, 584, 614, 718, 793
CviKI_1 RGCY 9 cut(s) 142, 179, 224, 379, 467, 584, 614, 718, 793
CviQI GTAC 2 cut(s) 681, 842
DdeI CTNAG 1 cut(s) 771
DpnI GATC 3 cut(s) 318, 363, 746
DpnII GATC 3 cut(s) 316, 361, 744
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 2 cut(s) 442, 821
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 218, 659
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 469
FaeI CATG 8 cut(s) 114, 165, 368, 530, 592, 604, 689, 848
FaqI GGGAC 1 cut(s) 631
FatI CATG 8 cut(s) 110, 161, 364, 526, 588, 600, 685, 844
FauI CCCGC 1 cut(s) 283
FauNDI CATATG 1 cut(s) 833
FbaI TGATCA 1 cut(s) 744
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 462
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 2 cut(s) 618, 793
HapII CCGG 1 cut(s) 443
HgaI GACGC 2 cut(s) 162, 503
Hin1I GRCGYC 2 cut(s) 173, 523
Hin1II CATG 8 cut(s) 114, 165, 368, 530, 592, 604, 689, 848
HinfI GANTC 4 cut(s) 130, 199, 235, 248
HpaII CCGG 1 cut(s) 443
HphI GGTGA 4 cut(s) 432, 559, 575, 754
Hpy166II GTNNAC 3 cut(s) 532, 683, 842
Hpy188I TCNGA 5 cut(s) 80, 147, 421, 493, 772
Hpy188III TCNNGA 2 cut(s) 8, 650
Hpy8I GTNNAC 3 cut(s) 532, 683, 842
HpyAV CCTTC 2 cut(s) 162, 565
HpyCH4III ACNGT 2 cut(s) 799, 854
HpyCH4IV ACGT 2 cut(s) 244, 523
HpyCH4V TGCA 9 cut(s) 67, 103, 122, 161, 272, 296, 532, 635, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 1 cut(s) 771
HpySE526I ACGT 2 cut(s) 244, 523
Hsp92I GRCGYC 2 cut(s) 173, 523
Hsp92II CATG 8 cut(s) 114, 165, 368, 530, 592, 604, 689, 848
Ksp22I TGATCA 1 cut(s) 744
Kzo9I GATC 3 cut(s) 316, 361, 744
LmnI GCTCC 2 cut(s) 139, 502
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 462
MaeII ACGT 2 cut(s) 244, 523
MaeIII GTNAC 1 cut(s) 639
MalI GATC 3 cut(s) 318, 363, 746
MboI GATC 3 cut(s) 316, 361, 744
MboII GAAGA 2 cut(s) 311, 809
MfeI CAATTG 1 cut(s) 507
MhlI GDGCHC 2 cut(s) 469, 534
MluCI AATT 3 cut(s) 274, 507, 553
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 8 cut(s) 74, 126, 510, 538, 646, 708, 711, 733
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 2 cut(s) 24, 278
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 220, 661
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 2 cut(s) 220, 661
MwoI GCNNNNNNNGC 1 cut(s) 503
NdeI CATATG 1 cut(s) 833
NdeII GATC 3 cut(s) 316, 361, 744
NlaIII CATG 8 cut(s) 114, 165, 368, 530, 592, 604, 689, 848
NlaIV GGNNCC 1 cut(s) 658
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 3 cut(s) 114, 165, 689
PciI ACATGT 1 cut(s) 110
PfeI GAWTC 3 cut(s) 130, 199, 248
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PscI ACATGT 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 218, 659
PspFI CCCAGC 2 cut(s) 614, 789
PspGI CCWGG 2 cut(s) 218, 659
PspN4I GGNNCC 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 682, 843
RsaNI GTAC 2 cut(s) 681, 842
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 24, 278
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 316, 361, 744
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 220, 661
SduI GDGCHC 2 cut(s) 469, 534
SfaNI GCATC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 3 cut(s) 274, 507, 553
SsiI CCGC 3 cut(s) 34, 290, 726
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 218, 659
TaaI ACNGT 2 cut(s) 799, 854
TaiI ACGT 2 cut(s) 247, 526
TaqI TCGA 2 cut(s) 166, 335
TasI AATT 3 cut(s) 274, 507, 553
TatI WGTACW 2 cut(s) 680, 841
TfiI GAWTC 3 cut(s) 130, 199, 248
Tru1I TTAA 2 cut(s) 24, 278
Tru9I TTAA 2 cut(s) 24, 278
TscAI CASTG 3 cut(s) 289, 771, 813
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 311, 566
TspRI CASTG 3 cut(s) 289, 771, 813
Van91I CCANNNNNTGG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 530
XapI RAATTY 2 cut(s) 274, 553
XceI RCATGY 3 cut(s) 114, 165, 689
XspI CTAG 1 cut(s) 462
ZraI GACGTC 1 cut(s) 524
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.