Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008289

Physical Location & Seq

Genomic Coordinates Reverse (-)

27078902 .. 27085549

Gene Structure 6648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1228700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGTCGCTGCTTCACACAGTGTCCCCGTCCCCTCTCGCTTCTCGCAACTCTTTACACACTCGCGCTTACATCCCCAACTTCTCTCGCTCTCGAGTCCCGGTCCCAAACGCCGTCAGGTGTAGTGTGGGAGAGCCTCTCAAGTATGCAAATGGAAAGCCGTGCGTTCCACTCTTCAGGAGTGAAGATATTATGCTGAATTTTTCGGCCACGAAAACACATTTGGTGAATGAAATTGGCAAGAATGATACCAGGCTCAGGATCTTTTCGGGCACTGCGAACCCCGTGCTTTCTCAGGAAATTGCTTGCTACATGGGTCTGGAACTTGGAAGGATTAAGATCAAACGCTTTGCTGATGGAGAGATTTATGTTCAGTTGCAAGAGAGTGTAAGAGGGTGTGATGTATATCTTGTGCAACCCACATGTCCTCCTGCAAACGAAAATCTTATGGAGCTTCTGGTCATGATTGATGCTTGTCGGAGGGCTTCAGCCAAGAATATCACTGCTGTGATTCCATATTTTGGCTATGCCAGGGCTGATAGAAAGACTCAAGGGCGTGAATCTATTGCAGCCAAACTTGTTGCAAATTTGATTACAGAAGCAGGTGCAGATCGTGTTCTTGCATGCGATCTTCATTCTGGGCAGTCTATGGGATATTTTGATATTGCCGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTACCTCGCCAGCAAGACTATATGCTCTGATGATTTGGTAGTGGTCTCACCTGATGTTGGGGGTGTTGCTAGAGCTCGTGCATTTGCAAAAAAATTATCTGATGCTCCTTTAGCCATTGTTGATAAAAGGCGTCATGGGCACAATGTGGCAGAGGTGATGAATTTGATTGGTGATGTGAAGGGAAAAGTAGCAGTTATGGTGGATGACATGATTGACACAGCTGGGACTATTACGAAAGGTGCTGCTTTACTACATCAAGAGGGTGCCAGGGAAGTCTATGCATGCAGTACGCATGCGGTTTTTAGCCCTCCTGCGATAGAGAGGCTGTCGAGCGGTTTGTTTCAAGAGGTGATCATAACAAATACCATTCCAGTGTCGGAGCAGAATTATTTTCCCCAGCTAACTGTCTTGTCAGTAGCAAATCTTCTGGGCGAGACCATATGGCGTGTTCATGATGACTGCTCTGGTGGCTATGAACCCTATTCCACCTTGGGCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Pribosyl_synth Pribosyltran_N

Protein Analysis

403

Amino Acids

43.69

Weight (kDa)

6.56

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	87 - 202	8.4e-52	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	246 - 333	1e-16	Phosphoribosyl transferase domain
Pribosyl_synth	PF14572	287 - 393	1.6e-22	Phosphoribosyl synthetase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44530 AT2G44530
fragaria_vesca	FvH4_7g07890 FvH4_7g07890
malus_domestica	MD02G1228700.v1.1 MD07G1084000.v1.1
prunus_persica	Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1
pyrus_communis	pycom02g19740 pycom07g06770
rosa_chinensis	RchiOBHm_Chr1g0341521
rosa_laevigata	RLG00000029101
rosa_multiflora	Rmu_ssc0000295.1_g000055
rosa_roxburghii	Rroxscaffold_4G00312190
rosa_rugosa	Rorug01G0155600.1 Rorug01G0155700.1 Rorug01G0155800.1
rosa_samantha	Rh1AG170900 Rh1BG138900 Rh1CG159200 Rh1DG171400
rosa_wichuraiana	Rw1G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	968
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccBSI	CCGCTC	1 cut(s)	1038
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	1001, 1038
AclWI	GGATC	2 cut(s)	269, 681
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	199, 586, 865
AcuI	CTGAAG	2 cut(s)	160, 471
AcyI	GRCGYC	2 cut(s)	5, 835
AdeI	CACNNNGTG	2 cut(s)	22, 850
AfaI	GTAC	1 cut(s)	994
AfiI	CCNNNNNNNGG	3 cut(s)	258, 521, 761
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	1049
AjnI	CCWGG	3 cut(s)	251, 530, 971
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	454, 779, 926, 1105
AluI	AGCT	4 cut(s)	454, 779, 926, 1105
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	2 cut(s)	754, 1133
AlwI	GGATC	2 cut(s)	269, 681
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	10, 569, 947
ApoI	RAATTY	3 cut(s)	199, 586, 865
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	5 cut(s)	238, 744, 871, 887, 1066
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	2 cut(s)	275, 846
BanI	GGYRCC	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	781
BarI	GAAGNNNNNNTAC	2 cut(s)	1113, 1145
BauI	CACGAG	1 cut(s)	780
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	2 cut(s)	581, 934
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	3 cut(s)	98, 145, 653
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	3 cut(s)	253, 532, 973
BclI	TGATCA	1 cut(s)	1056
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	754, 1133
BfaI	CTAG	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	593
BisI	GCNGC	3 cut(s)	11, 570, 948
BlsI	GCNGC	3 cut(s)	12, 571, 949
Bme1390I	CCNGG	4 cut(s)	101, 253, 532, 973
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	105, 970
BmrFI	CCNGG	4 cut(s)	101, 253, 532, 973
BmsI	GCATC	2 cut(s)	460, 796
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	125, 534
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	338, 405
BsaHI	GRCGYC	2 cut(s)	5, 835
BsaI	GGTCTC	2 cut(s)	754, 1133
BsaJI	CCNNGG	4 cut(s)	531, 669, 972, 1194
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 521, 761
Bse1I	ACTGG	1 cut(s)	1076
Bse8I	GATNNNNATC	2 cut(s)	338, 405
BseBI	CCWGG	3 cut(s)	253, 532, 973
BseDI	CCNNGG	4 cut(s)	531, 669, 972, 1194
BseGI	GGATG	2 cut(s)	72, 913
BseJI	GATNNNNATC	2 cut(s)	338, 405
BseLI	CCNNNNNNNGG	3 cut(s)	258, 521, 761
BseMII	CTCAG	2 cut(s)	271, 308
BseNI	ACTGG	1 cut(s)	1076
BseSI	GKGCMC	2 cut(s)	275, 846
BseXI	GCAGC	2 cut(s)	581, 934
BseYI	CCCAGC	2 cut(s)	926, 1101
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	968
BsiHKAI	GWGCWC	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	5 cut(s)	10, 16, 83, 89, 943
BslI	CCNNNNNNNGG	3 cut(s)	258, 521, 761
BsmAI	GTCTC	2 cut(s)	754, 1133
BsmFI	GGGAC	5 cut(s)	10, 16, 83, 89, 943
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	2 cut(s)	754, 1133
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	275, 781, 846
Bsp143I	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
BspACI	CCGC	2 cut(s)	1001, 1038
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	270, 307
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	462, 1156
BspLI	GGNNCC	2 cut(s)	105, 970
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	269, 681
BspT107I	GGYRCC	1 cut(s)	968
BspTNI	GGTCTC	2 cut(s)	754, 1133
BsrBI	CCGCTC	1 cut(s)	1038
BsrI	ACTGG	1 cut(s)	1076
BssECI	CCNNGG	4 cut(s)	531, 669, 972, 1194
BssMI	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
BssNI	GRCGYC	2 cut(s)	5, 835
BssSI	CACGAG	1 cut(s)	780
BssT1I	CCWWGG	1 cut(s)	1194
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	3 cut(s)	253, 532, 973
Bst4CI	ACNGT	2 cut(s)	22, 1111
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	2 cut(s)	5, 835
BstC8I	GCNNGC	5 cut(s)	307, 625, 715, 988, 999
BstDEI	CTNAG	2 cut(s)	257, 294
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	72, 913
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	264, 342, 613, 631, 676, 1059
BstMAI	GTCTC	2 cut(s)	754, 1133
BstMBI	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
BstMWI	GCNNNNNNNGC	3 cut(s)	815, 841, 1173
BstNI	CCWGG	3 cut(s)	253, 532, 973
BstNSI	RCATGY	4 cut(s)	426, 627, 990, 1001
BstSCI	CCNGG	4 cut(s)	99, 251, 530, 971
BstSLI	GKGCMC	2 cut(s)	275, 846
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	581, 934
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	72, 913
BtsI	GCAGTG	2 cut(s)	273, 501
BtsIMutI	CAGTG	4 cut(s)	27, 273, 501, 1083
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	5 cut(s)	307, 625, 715, 988, 999
CciI	TCATGA	2 cut(s)	462, 1156
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	993
CviQI	GTAC	1 cut(s)	993
DdeI	CTNAG	2 cut(s)	257, 294
DpnI	GATC	6 cut(s)	263, 341, 612, 630, 675, 1058
DpnII	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
DraIII	CACNNNGTG	2 cut(s)	22, 850
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	1194
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	2 cut(s)	754, 1133
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	2 cut(s)	160, 471
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	779
EcoRII	CCWGG	3 cut(s)	251, 530, 971
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT22I	ATGCAT	1 cut(s)	988
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	1 cut(s)	1194
FaqI	GGGAC	5 cut(s)	10, 16, 83, 89, 943
FauNDI	CATATG	1 cut(s)	1145
FbaI	TGATCA	1 cut(s)	1056
Fnu4HI	GCNGC	3 cut(s)	11, 570, 948
FokI	GGATG	2 cut(s)	59, 920
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	3 cut(s)	11, 570, 948
FspBI	CTAG	1 cut(s)	774
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	11, 570, 948
GsaI	CCCAGC	2 cut(s)	930, 1105
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	824
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	2 cut(s)	5, 835
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	96, 511, 547, 560
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	5 cut(s)	238, 744, 871, 887, 1066
Hpy188I	TCNGA	4 cut(s)	480, 733, 805, 1084
Hpy188III	TCNNGA	9 cut(s)	93, 178, 259, 296, 320, 463, 962, 1049, 1157
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	324, 877
HpyCH4III	ACNGT	2 cut(s)	22, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	815, 841, 1173
HpyF3I	CTNAG	2 cut(s)	257, 294
Hsp92I	GRCGYC	2 cut(s)	5, 835
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	1056
Kzo9I	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
LmnI	GCTCC	3 cut(s)	451, 814, 1084
Lsp1109I	GCAGC	2 cut(s)	581, 934
LweI	GCATC	2 cut(s)	460, 796
MaeI	CTAG	1 cut(s)	774
MalI	GATC	6 cut(s)	263, 341, 612, 630, 675, 1058
MbiI	CCGCTC	1 cut(s)	1038
MboI	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
MboII	GAAGA	4 cut(s)	166, 197, 623, 1121
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	275, 781, 846
MluCI	AATT	7 cut(s)	199, 234, 300, 586, 797, 865, 1090
MlyI	GAGTC	2 cut(s)	105, 541
MmeI	TCCRAC	2 cut(s)	458, 1062
Mph1103I	ATGCAT	1 cut(s)	988
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	3 cut(s)	506, 681, 1076
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	4 cut(s)	101, 253, 532, 973
MvaI	CCWGG	3 cut(s)	253, 532, 973
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	815, 841, 1173
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	1145
NdeII	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
NlaIV	GGNNCC	2 cut(s)	105, 970
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	4 cut(s)	426, 627, 990, 1001
OliI	CACNNNNGTG	1 cut(s)	506
PaeI	GCATGC	3 cut(s)	627, 990, 1001
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	2 cut(s)	462, 1156
PaqCI	CACCTGC	1 cut(s)	593
PciI	ACATGT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	511, 560
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	12, 571, 949
PleI	GAGTC	2 cut(s)	104, 541
PpsI	GAGTC	2 cut(s)	104, 541
PscI	ACATGT	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	781
Psp6I	CCWGG	3 cut(s)	251, 530, 971
PspFI	CCCAGC	2 cut(s)	926, 1101
PspGI	CCWGG	3 cut(s)	251, 530, 971
PspN4I	GGNNCC	2 cut(s)	105, 970
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	1 cut(s)	994
RsaNI	GTAC	1 cut(s)	993
RseI	CAYNNNNRTG	3 cut(s)	506, 681, 1076
SacI	GAGCTC	1 cut(s)	781
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	11, 570, 948
Sau3AI	GATC	6 cut(s)	261, 339, 610, 628, 673, 1056
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	105, 541
ScrFI	CCNGG	4 cut(s)	101, 253, 532, 973
SduI	GDGCHC	3 cut(s)	275, 781, 846
SfaNI	GCATC	2 cut(s)	460, 796
Sfr274I	CTCGAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	3 cut(s)	506, 681, 1076
SmlI	CTYRAG	3 cut(s)	93, 140, 549
SmoI	CTYRAG	3 cut(s)	93, 140, 549
SphI	GCATGC	3 cut(s)	627, 990, 1001
Sse9I	AATT	7 cut(s)	199, 234, 300, 586, 797, 865, 1090
SsiI	CCGC	2 cut(s)	1001, 1038
SspMI	CTAG	1 cut(s)	774
SstI	GAGCTC	1 cut(s)	781
StyD4I	CCNGG	4 cut(s)	99, 251, 530, 971
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	2 cut(s)	22, 1111
TaqI	TCGA	2 cut(s)	94, 1034
TasI	AATT	7 cut(s)	199, 234, 300, 586, 797, 865, 1090
TfiI	GAWTC	2 cut(s)	511, 560
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	4 cut(s)	27, 280, 508, 1083
TseI	GCWGC	3 cut(s)	10, 569, 947
TspDTI	ATGAA	5 cut(s)	246, 623, 878, 1145, 1194
TspRI	CASTG	4 cut(s)	27, 280, 508, 1083
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	3 cut(s)	199, 586, 865
XceI	RCATGY	4 cut(s)	426, 627, 990, 1001
XhoI	CTCGAG	1 cut(s)	93
XspI	CTAG	1 cut(s)	774
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.