Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008289

Physical Location & Seq

Genomic Coordinates Forward (+)

35210225 .. 35220619

Gene Structure 10395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTCTGGAACTTGGAAAGATTAAGATAAAGCGGTTTGCTGATGGAGAGATATATGTTCAGTTGCAAGAAAGTGTCAGAGGGTGTGATGTATATCTTGTGCAACCAACATGTCCTCCTGCAAATGAGAATCTAATGGAGCTTCTGATAATGATTGATGCATGTCGAAGGGCGTCAGCCAAGAACATTACTGCTGTGATTCCATATTTTGGATATGCCAGGGCTGATAGAAAGACTCAAGGGCGTGAATCTATTGCTGCCAAACTTGTTGCAAATTTAATCACTGAAGCGGGTGCAAATCGTGTTCTTGCGTGTGATCTTCATTCTGGTCAATCCATGGGATATTTTGATATTCCTGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTACCTTGCCAGCAAGACTATCTGTTCTGATGATTTGGTAGTGGTCTCACCGGATGTTGGGGGTGTTGCTAGAGCCCGTGCTTTTGCGAAAAAGTTATCTGATGCTCCTCTGGCAATTGTTGATAAAAGACGTCATGGGCACAATGTCGCAGAGGTGATGAATTTGATAGGTGACGTGAAGGGAAAAGTAGCCGTCATGGTTGATGACATGATTGATACAGCTGGGACTATTTCCAAAGGTGCAGAGTTACTACATCAAGAGGGTGCCAGGGAAGTCTATGCGTGCAGTACACATGCTGTTTTTAGTCCTCCTGCCATAGAGAGGCTGTCAAGCGGTTTGTTCCAAGAGGTGATCATAACAAATACTATTCCAGTGTCTGAGCAGAACTATTTTCCCCAGCTAACTGTCCTGTCAGTGGCAAATCTTCTGGGAGAGACCATATGGCGTGTACATGATGACTGTTCTGTGAGTAGCATATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Pribosyl_synth Pribosyltran_N

Protein Analysis

292

Amino Acids

31.73

Weight (kDa)

5.66

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	2 - 98	6.3e-46	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	142 - 229	2e-17	Phosphoribosyl transferase domain
Pribosyl_synth	PF14572	183 - 291	2e-24	Phosphoribosyl synthetase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44530 AT2G44530
fragaria_vesca	FvH4_7g07890 FvH4_7g07890
malus_domestica	MD02G1228700.v1.1 MD07G1084000.v1.1
prunus_persica	Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1
pyrus_communis	pycom02g19740 pycom07g06770
rosa_chinensis	RchiOBHm_Chr1g0341521
rosa_laevigata	RLG00000029101
rosa_multiflora	Rmu_ssc0000295.1_g000055
rosa_roxburghii	Rroxscaffold_4G00312190
rosa_rugosa	Rorug01G0155600.1 Rorug01G0155700.1 Rorug01G0155800.1
rosa_samantha	Rh1AG170900 Rh1BG138900 Rh1CG159200 Rh1DG171400
rosa_wichuraiana	Rw1G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	656
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	3 cut(s)	34, 290, 726
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	274, 553
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	173, 523
AfaI	GTAC	2 cut(s)	682, 843
AfiI	CCNNNNNNNGG	4 cut(s)	209, 449, 714, 808
AflIII	ACRYGT	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	218, 659
AluBI	AGCT	3 cut(s)	142, 614, 793
AluI	AGCT	3 cut(s)	142, 614, 793
Alw26I	GTCTC	2 cut(s)	442, 821
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	274, 553
AsuHPI	GGTGA	4 cut(s)	432, 559, 575, 754
BaeGI	GKGCMC	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	220, 661
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	442, 821
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	220, 661
BmgBI	CACGTC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	2 cut(s)	220, 661
BmsI	GCATC	2 cut(s)	148, 484
BpuEI	CTTGAG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	2 cut(s)	173, 523
BsaI	GGTCTC	2 cut(s)	442, 821
BsaJI	CCNNGG	3 cut(s)	219, 336, 660
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 449, 714, 808
Bse1I	ACTGG	1 cut(s)	764
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	220, 661
BseDI	CCNNGG	3 cut(s)	219, 336, 660
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	209, 449, 714, 808
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	2 cut(s)	614, 789
BsgI	GTGCAG	2 cut(s)	654, 697
BshNI	GGYRCC	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	4 cut(s)	209, 449, 714, 808
BsmAI	GTCTC	2 cut(s)	442, 821
BsmFI	GGGAC	1 cut(s)	631
Bso31I	GGTCTC	2 cut(s)	442, 821
Bsp1286I	GDGCHC	2 cut(s)	469, 534
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	3 cut(s)	316, 361, 744
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	3 cut(s)	34, 290, 726
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	1 cut(s)	658
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	656
BspTNI	GGTCTC	2 cut(s)	442, 821
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	3 cut(s)	219, 336, 660
BssMI	GATC	3 cut(s)	316, 361, 744
BssNI	GRCGYC	2 cut(s)	173, 523
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	220, 661
Bst4CI	ACNGT	2 cut(s)	799, 854
BstACI	GRCGYC	2 cut(s)	173, 523
BstAUI	TGTACA	1 cut(s)	841
BstC8I	GCNNGC	2 cut(s)	403, 676
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	3 cut(s)	319, 364, 747
BstMAI	GTCTC	2 cut(s)	442, 821
BstMBI	GATC	3 cut(s)	316, 361, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	2 cut(s)	220, 661
BstNSI	RCATGY	3 cut(s)	114, 165, 689
BstSCI	CCNGG	2 cut(s)	218, 659
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	282, 771, 813
Cac8I	GCNNGC	2 cut(s)	403, 676
CaiI	CAGNNNCTG	1 cut(s)	770
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	681, 842
CviAII	CATG	9 cut(s)	111, 162, 337, 365, 527, 589, 601, 686, 845
CviJI	RGCY	9 cut(s)	142, 179, 224, 379, 467, 584, 614, 718, 793
CviKI_1	RGCY	9 cut(s)	142, 179, 224, 379, 467, 584, 614, 718, 793
CviQI	GTAC	2 cut(s)	681, 842
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	3 cut(s)	318, 363, 746
DpnII	GATC	3 cut(s)	316, 361, 744
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	469
Eco31I	GGTCTC	2 cut(s)	442, 821
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	218, 659
EcoT14I	CCWWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	9 cut(s)	114, 165, 340, 368, 530, 592, 604, 689, 848
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	9 cut(s)	110, 161, 336, 364, 526, 588, 600, 685, 844
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	833
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	2 cut(s)	618, 793
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	162
Hin1I	GRCGYC	2 cut(s)	173, 523
Hin1II	CATG	9 cut(s)	114, 165, 340, 368, 530, 592, 604, 689, 848
HinfI	GANTC	4 cut(s)	130, 199, 235, 248
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	4 cut(s)	432, 559, 575, 754
Hpy166II	GTNNAC	2 cut(s)	683, 842
Hpy188I	TCNGA	5 cut(s)	80, 147, 421, 493, 772
Hpy188III	TCNNGA	2 cut(s)	8, 650
Hpy8I	GTNNAC	2 cut(s)	683, 842
HpyAV	CCTTC	2 cut(s)	162, 565
HpyCH4III	ACNGT	2 cut(s)	799, 854
HpyCH4IV	ACGT	2 cut(s)	523, 567
HpyCH4V	TGCA	8 cut(s)	67, 103, 122, 161, 272, 296, 635, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	2 cut(s)	523, 567
Hsp92I	GRCGYC	2 cut(s)	173, 523
Hsp92II	CATG	9 cut(s)	114, 165, 340, 368, 530, 592, 604, 689, 848
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	316, 361, 744
LmnI	GCTCC	2 cut(s)	139, 502
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	148, 484
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	2 cut(s)	523, 567
MaeIII	GTNAC	2 cut(s)	563, 639
MalI	GATC	3 cut(s)	318, 363, 746
MboI	GATC	3 cut(s)	316, 361, 744
MboII	GAAGA	2 cut(s)	311, 809
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	469, 534
MluCI	AATT	3 cut(s)	274, 507, 553
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	8 cut(s)	74, 126, 510, 538, 646, 708, 711, 733
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	2 cut(s)	24, 278
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	220, 661
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	220, 661
MwoI	GCNNNNNNNGC	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	833
NdeII	GATC	3 cut(s)	316, 361, 744
NlaIII	CATG	9 cut(s)	114, 165, 340, 368, 530, 592, 604, 689, 848
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	3 cut(s)	114, 165, 689
PciI	ACATGT	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	130, 199, 248
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	218, 659
PspFI	CCCAGC	2 cut(s)	614, 789
PspGI	CCWGG	2 cut(s)	218, 659
PspN4I	GGNNCC	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	2 cut(s)	682, 843
RsaNI	GTAC	2 cut(s)	681, 842
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	24, 278
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	316, 361, 744
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	220, 661
SduI	GDGCHC	2 cut(s)	469, 534
SfaNI	GCATC	2 cut(s)	148, 484
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	274, 507, 553
SsiI	CCGC	3 cut(s)	34, 290, 726
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	218, 659
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	799, 854
TaiI	ACGT	2 cut(s)	526, 570
TaqI	TCGA	1 cut(s)	166
TasI	AATT	3 cut(s)	274, 507, 553
TatI	WGTACW	2 cut(s)	680, 841
TfiI	GAWTC	3 cut(s)	130, 199, 248
Tru1I	TTAA	2 cut(s)	24, 278
Tru9I	TTAA	2 cut(s)	24, 278
TscAI	CASTG	3 cut(s)	289, 771, 813
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	311, 566
TspRI	CASTG	3 cut(s)	289, 771, 813
Van91I	CCANNNNNTGG	1 cut(s)	209
XapI	RAATTY	2 cut(s)	274, 553
XceI	RCATGY	3 cut(s)	114, 165, 689
XspI	CTAG	1 cut(s)	462
ZraI	GACGTC	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.