Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008289

Physical Location & Seq

Genomic Coordinates Forward (+)

32683649 .. 32721168

Gene Structure 37520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG170900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCTCCATCCACTCAACAGAAAAGCATCCACTAGAAAGGATGAAATGCTGCCGAATTTTCTGACCAGGACTACACATGCGGTGAATGCAGCCAGCAAGAATGACACCAGGCTCAGGATATTTTCCGGAACTGCGAACCCGGCGCTTTCTCAGGAAATTGCATGCTACATGGGTCTGGAACTTGGAAAGATTAAGATAAAGCGGTTTGCTGATGGAGAGATATATGTTCAGTTGCAAGAAAGTGTCAGAGGGTGTGATGTATATCTTGTGCAACCAACATGTCCTCCTGCAAATGAGAATCTAATGGAGCTTCTGATAATGATTGATGCATGTCGAAGGGCGTCAGCCAAGAACATTACTGCTGTGATTCCATATTTTGGATATGCCAGGGCTGATAGAAAGACTCAAGGGCGTGAATCTATTGCTGCCAAACTTGTTGCAAATTTAATCACTGAAGCGGGTGCAAATCGTGTTCTTGCGTGTGATCTTCATTCTGGTCAATCCATGGGATATTTTGATATTCCTGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTACCTTGCCAGCAAGACTATCTGTTCTGATGATTTGGTAGTGGTCTCACCGGATGTTGGGGGTGTTGCTAGAGCCCGTGCTTTTGCGAAAAAGTTATCTGATGCTCCTCTGGCAATTGTTGATAAAAGACGTCATGGGCACAATGTCGCAGAGGTGATGAATTTGATAGGTGACGTGAAGGGAAAAGTAGCCGTCATGGTTGATGACATGATTGATACAGCTGGGACTATTTCCAAAGGTGCAGAGTTACTACATCAAGAGGGTGCCAGGGAAGTCTATGCGTGCAGTACACATGCTGTTTTTAGTCCTCCTGCCATAGAGAGGCTGTCAAGCGGTTTGTTCCAAGAGGTGATCATAACAAATACTATTCCAGTGTCTGAGCAGAACTATTTTCCCCAGCTAACTGTCCTGTCAGTGGCAAATCTTCTGGGAGAGACCATATGGCGTGTACATGATGACTGTTCTGGTGGCTTTGAACCCTATTCCACCTTGGGCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Pribosyl_synth Pribosyltran_N

Protein Analysis

354

Amino Acids

38.56

Weight (kDa)

6.16

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	38 - 154	7.6e-53	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	198 - 285	2.9e-17	Phosphoribosyl transferase domain
Pribosyl_synth	PF14572	239 - 342	8.1e-23	Phosphoribosyl synthetase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44530 AT2G44530
fragaria_vesca	FvH4_7g07890 FvH4_7g07890
malus_domestica	MD02G1228700.v1.1 MD07G1084000.v1.1
prunus_persica	Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1
pyrus_communis	pycom02g19740 pycom07g06770
rosa_chinensis	RchiOBHm_Chr1g0341521
rosa_laevigata	RLG00000029101
rosa_multiflora	Rmu_ssc0000295.1_g000055
rosa_roxburghii	Rroxscaffold_4G00312190
rosa_rugosa	Rorug01G0155600.1 Rorug01G0155700.1 Rorug01G0155800.1
rosa_samantha	Rh1AG170900 Rh1BG138900 Rh1CG159200 Rh1DG171400
rosa_wichuraiana	Rw1G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	4 cut(s)	80, 202, 458, 894
AclWI	GGATC	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	55, 442, 721
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	341, 691
AfaI	GTAC	2 cut(s)	850, 1011
AfiI	CCNNNNNNNGG	5 cut(s)	114, 377, 617, 882, 976
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	1037
AjiI	CACGTC	1 cut(s)	736
AjnI	CCWGG	4 cut(s)	65, 107, 386, 827
AluBI	AGCT	3 cut(s)	310, 782, 961
AluI	AGCT	3 cut(s)	310, 782, 961
Alw26I	GTCTC	2 cut(s)	610, 989
AlwI	GGATC	1 cut(s)	537
AlwNI	CAGNNNCTG	1 cut(s)	938
Aor13HI	TCCGGA	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	49, 89, 425
ApoI	RAATTY	3 cut(s)	55, 442, 721
AspLEI	GCGC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	5 cut(s)	94, 600, 727, 743, 922
BaeGI	GKGCMC	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	637
BbvI	GCAGC	3 cut(s)	36, 101, 412
BccI	CCATC	2 cut(s)	15, 206
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	4 cut(s)	67, 109, 388, 829
BclI	TGATCA	1 cut(s)	912
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	610, 989
BfaI	CTAG	2 cut(s)	33, 630
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	3 cut(s)	50, 90, 426
BlsI	GCNGC	3 cut(s)	51, 91, 427
Bme1390I	CCNGG	5 cut(s)	67, 109, 140, 388, 829
BmgBI	CACGTC	1 cut(s)	736
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	5 cut(s)	67, 109, 140, 388, 829
BmsI	GCATC	3 cut(s)	35, 316, 652
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	261
BsaHI	GRCGYC	2 cut(s)	341, 691
BsaI	GGTCTC	2 cut(s)	610, 989
BsaJI	CCNNGG	4 cut(s)	387, 504, 828, 1050
BsaWI	WCCGGW	2 cut(s)	125, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 377, 617, 882, 976
Bse1I	ACTGG	1 cut(s)	932
Bse8I	GATNNNNATC	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	4 cut(s)	67, 109, 388, 829
BseDI	CCNNGG	4 cut(s)	387, 504, 828, 1050
BseGI	GGATG	4 cut(s)	7, 26, 46, 619
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	5 cut(s)	114, 377, 617, 882, 976
BseMII	CTCAG	3 cut(s)	127, 164, 930
BseNI	ACTGG	1 cut(s)	932
BseRI	GAGGAG	1 cut(s)	657
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	3 cut(s)	36, 101, 412
BseYI	CCCAGC	2 cut(s)	782, 957
BsgI	GTGCAG	2 cut(s)	822, 865
BshNI	GGYRCC	1 cut(s)	824
BsiSI	CCGG	3 cut(s)	126, 140, 611
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	5 cut(s)	114, 377, 617, 882, 976
BsmAI	GTCTC	2 cut(s)	610, 989
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	1 cut(s)	91
Bso31I	GGTCTC	2 cut(s)	610, 989
Bsp1286I	GDGCHC	2 cut(s)	637, 702
Bsp13I	TCCGGA	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	1009
Bsp143I	GATC	3 cut(s)	484, 529, 912
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	4 cut(s)	80, 202, 458, 894
BspCNI	CTCAG	3 cut(s)	126, 163, 931
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	824
BspTNI	GGTCTC	2 cut(s)	610, 989
BsrGI	TGTACA	1 cut(s)	1009
BsrI	ACTGG	1 cut(s)	932
BssECI	CCNNGG	4 cut(s)	387, 504, 828, 1050
BssMI	GATC	3 cut(s)	484, 529, 912
BssNI	GRCGYC	2 cut(s)	341, 691
BssT1I	CCWWGG	2 cut(s)	504, 1050
Bst2UI	CCWGG	4 cut(s)	67, 109, 388, 829
Bst4CI	ACNGT	2 cut(s)	967, 1022
BstACI	GRCGYC	2 cut(s)	341, 691
BstAUI	TGTACA	1 cut(s)	1009
BstC8I	GCNNGC	4 cut(s)	94, 163, 571, 844
BstDEI	CTNAG	3 cut(s)	113, 150, 939
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	4 cut(s)	7, 26, 46, 619
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	487, 532, 915
BstMAI	GTCTC	2 cut(s)	610, 989
BstMBI	GATC	3 cut(s)	484, 529, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 140, 671
BstNI	CCWGG	4 cut(s)	67, 109, 388, 829
BstNSI	RCATGY	5 cut(s)	80, 165, 282, 333, 857
BstSCI	CCNGG	5 cut(s)	65, 107, 138, 386, 827
BstSLI	GKGCMC	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	36, 101, 412
BtgI	CCRYGG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	736
BtsCI	GGATG	4 cut(s)	7, 26, 46, 619
BtsIMutI	CAGTG	3 cut(s)	450, 939, 981
Cac8I	GCNNGC	4 cut(s)	94, 163, 571, 844
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	1 cut(s)	145
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	849, 1010
CviQI	GTAC	2 cut(s)	849, 1010
DdeI	CTNAG	3 cut(s)	113, 150, 939
DpnI	GATC	3 cut(s)	486, 531, 914
DpnII	GATC	3 cut(s)	484, 529, 912
Eco130I	CCWWGG	2 cut(s)	504, 1050
Eco24I	GRGCYC	1 cut(s)	637
Eco31I	GGTCTC	2 cut(s)	610, 989
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	4 cut(s)	65, 107, 386, 827
EcoT14I	CCWWGG	2 cut(s)	504, 1050
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	637
ErhI	CCWWGG	2 cut(s)	504, 1050
FaqI	GGGAC	1 cut(s)	799
FauI	CCCGC	1 cut(s)	451
FauNDI	CATATG	1 cut(s)	1001
FbaI	TGATCA	1 cut(s)	912
Fnu4HI	GCNGC	3 cut(s)	50, 90, 426
FokI	GGATG	3 cut(s)	13, 53, 626
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	3 cut(s)	50, 90, 426
FspBI	CTAG	2 cut(s)	33, 630
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	50, 90, 426
GsaI	CCCAGC	2 cut(s)	786, 961
HaeII	RGCGCY	1 cut(s)	146
HapII	CCGG	3 cut(s)	126, 140, 611
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	341, 691
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	4 cut(s)	298, 367, 403, 416
HpaII	CCGG	3 cut(s)	126, 140, 611
HphI	GGTGA	5 cut(s)	94, 600, 727, 743, 922
Hpy166II	GTNNAC	2 cut(s)	851, 1010
Hpy188I	TCNGA	6 cut(s)	63, 248, 315, 589, 661, 940
Hpy188III	TCNNGA	5 cut(s)	115, 126, 152, 176, 818
Hpy8I	GTNNAC	2 cut(s)	851, 1010
HpyAV	CCTTC	2 cut(s)	330, 733
HpyCH4III	ACNGT	2 cut(s)	967, 1022
HpyCH4IV	ACGT	2 cut(s)	691, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 140, 671
HpyF3I	CTNAG	3 cut(s)	113, 150, 939
HpySE526I	ACGT	2 cut(s)	691, 735
Hsp92I	GRCGYC	2 cut(s)	341, 691
HspAI	GCGC	1 cut(s)	143
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	912
Kzo9I	GATC	3 cut(s)	484, 529, 912
LmnI	GCTCC	3 cut(s)	9, 307, 670
Lsp1109I	GCAGC	3 cut(s)	36, 101, 412
LweI	GCATC	3 cut(s)	35, 316, 652
MaeI	CTAG	2 cut(s)	33, 630
MaeII	ACGT	2 cut(s)	691, 735
MaeIII	GTNAC	2 cut(s)	731, 807
MalI	GATC	3 cut(s)	486, 531, 914
MboI	GATC	3 cut(s)	484, 529, 912
MboII	GAAGA	2 cut(s)	479, 977
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	2 cut(s)	637, 702
MluCI	AATT	5 cut(s)	55, 156, 442, 675, 721
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	8 cut(s)	242, 294, 678, 706, 814, 876, 879, 901
Mph1103I	ATGCAT	1 cut(s)	331
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	2 cut(s)	192, 446
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	3 cut(s)	126, 140, 611
MspR9I	CCNGG	5 cut(s)	67, 109, 140, 388, 829
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	4 cut(s)	67, 109, 388, 829
MwoI	GCNNNNNNNGC	3 cut(s)	86, 140, 671
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	1001
NdeII	GATC	3 cut(s)	484, 529, 912
NlaIV	GGNNCC	1 cut(s)	826
NmuCI	GTSAC	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	5 cut(s)	80, 165, 282, 333, 857
PaeI	GCATGC	1 cut(s)	165
PciI	ACATGT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	298, 367, 416
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	51, 91, 427
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	278
Psp6I	CCWGG	4 cut(s)	65, 107, 386, 827
PspFI	CCCAGC	2 cut(s)	782, 957
PspGI	CCWGG	4 cut(s)	65, 107, 386, 827
PspN4I	GGNNCC	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	850, 1011
RsaNI	GTAC	2 cut(s)	849, 1010
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	192, 446
SatI	GCNGC	3 cut(s)	50, 90, 426
Sau3AI	GATC	3 cut(s)	484, 529, 912
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	5 cut(s)	67, 109, 140, 388, 829
SduI	GDGCHC	2 cut(s)	637, 702
SfaNI	GCATC	3 cut(s)	35, 316, 652
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	5 cut(s)	55, 156, 442, 675, 721
SsiI	CCGC	4 cut(s)	80, 202, 458, 894
SspMI	CTAG	2 cut(s)	33, 630
StyD4I	CCNGG	5 cut(s)	65, 107, 138, 386, 827
StyI	CCWWGG	2 cut(s)	504, 1050
TaaI	ACNGT	2 cut(s)	967, 1022
TaiI	ACGT	2 cut(s)	694, 738
TaqI	TCGA	1 cut(s)	334
TasI	AATT	5 cut(s)	55, 156, 442, 675, 721
TatI	WGTACW	2 cut(s)	848, 1009
TfiI	GAWTC	3 cut(s)	298, 367, 416
Tru1I	TTAA	2 cut(s)	192, 446
Tru9I	TTAA	2 cut(s)	192, 446
TscAI	CASTG	3 cut(s)	457, 939, 981
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	3 cut(s)	49, 89, 425
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	57, 479, 734
TspRI	CASTG	3 cut(s)	457, 939, 981
Van91I	CCANNNNNTGG	1 cut(s)	377
XapI	RAATTY	3 cut(s)	55, 442, 721
XceI	RCATGY	5 cut(s)	80, 165, 282, 333, 857
XspI	CTAG	2 cut(s)	33, 630
ZraI	GACGTC	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.