Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008289

Physical Location & Seq

Genomic Coordinates Forward (+)

6088893 .. 6094745

Gene Structure 5853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCGTCGCTGCTTCACACAGCGTCCCGGTCCTCTCTCGCTTCTCGCGACTATCTACGCCATCGCACTTACCTCCCCAACTACTCTCGCTCTCAAATCCCCATCCTGAATTCCGTGAGGTGTGGTGTGGGAGAGCCTCTCAAGTACGCAAATGGAACGCACGGACTCCTCAGGAGTGAAGATTTGGTGCCGAATTTTTCGGACACGAAAACACATTTGGTGAATGAAATTAGCAAGAATGATACCAGGCTCAGAATCTTTTCCGGCACTGCGAACCCTGCGCTGTCTCAGGAAATTGCTTGCTGCATGGGCCTGGAACTTGGAAGGATTAAGATCGAACTTAGCTTTGCTGATGGAGAGATATATGTTCAGTTGCAAGAGAGTGTAAGAGGGTGTGATGTATATCTTGTGCAACCCACATGTCCTCCTGCAAATGAAAATCTTATGGAGCTTCTTGTCATGATTGATGCTTGTCGGAGGGCTTCAGCCAAGAATATCACTGCTGTGATTCCATATTTTGGCTATGCCAGGGCTGATAGAAAGACTCAAGGGCGTGAATCTATTGCAGCCAAACTTGTTGCAAATTTGATTACAGAAGCAGGTGCAAATCGTGTTCTTGCATGTGATCTTCATTCTGGGCAGTCTATGGGATATTTTGATATTCCTGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTATCTTGCCAGCAAGACTATATACTCTGATGATTTGGTAGTGGTCTCACCCGATGTTGGGGGTGTTGCTAGAGCTCGTGCTTTCGCGAAAAAATTATCTGATGCTCCTTTAGCCATTGTTGATAAAAGACGTCACGGGCACAATGTGGCGGAGGTGATGAATTTGATAGGTGATGTCAAGGGAAAAGTAGCAGTTATGGTGGATGACATGATTGACACAGCTGGGACTATTATGAAAGGTGCTGCTTTACTACACCAAGAGGGTGCCAGGGAAGTCTATGCATGTTGTACACATGCGGTTTTTAGGTATCCCTCCTGCTATAGAGAGGCTGTCGAGTGGTTTGTTTCAAGAGGTGATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Pribosyl_synth Pribosyltran_N

Protein Analysis

355

Amino Acids

38.87

Weight (kDa)

7.58

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44530 AT2G44530
fragaria_vesca	FvH4_7g07890 FvH4_7g07890
malus_domestica	MD02G1228700.v1.1 MD07G1084000.v1.1
prunus_persica	Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1 Prupe.2G110600_v2.0.a1
pyrus_communis	pycom02g19740 pycom07g06770
rosa_chinensis	RchiOBHm_Chr1g0341521
rosa_laevigata	RLG00000029101
rosa_multiflora	Rmu_ssc0000295.1_g000055
rosa_roxburghii	Rroxscaffold_4G00312190
rosa_rugosa	Rorug01G0155600.1 Rorug01G0155700.1 Rorug01G0155800.1
rosa_samantha	Rh1AG170900 Rh1BG138900 Rh1CG159200 Rh1DG171400
rosa_wichuraiana	Rw1G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	590
AatII	GACGTC	1 cut(s)	835
Acc36I	ACCTGC	1 cut(s)	590
AccB1I	GGYRCC	2 cut(s)	187, 965
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccII	CGCG	2 cut(s)	48, 788
AciI	CCGC	2 cut(s)	851, 998
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	4 cut(s)	109, 193, 583, 862
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	2 cut(s)	5, 832
AdeI	CACNNNGTG	1 cut(s)	847
AfaI	GTAC	2 cut(s)	146, 991
AfiI	CCNNNNNNNGG	3 cut(s)	518, 758, 759
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	1050
AjnI	CCWGG	4 cut(s)	245, 312, 527, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	4 cut(s)	345, 451, 776, 923
AluI	AGCT	4 cut(s)	345, 451, 776, 923
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	2 cut(s)	291, 751
AlwI	GGATC	1 cut(s)	678
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	4 cut(s)	10, 303, 566, 944
ApoI	RAATTY	4 cut(s)	109, 193, 583, 862
Asp700I	GAANNNNTTC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	30, 310
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	4 cut(s)	232, 741, 868, 884
AvaII	GGWCC	1 cut(s)	30
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	843
BanI	GGYRCC	2 cut(s)	187, 965
BanII	GRGCYC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	778
BbvI	GCAGC	3 cut(s)	290, 578, 931
BccI	CCATC	3 cut(s)	69, 110, 347
BciT130I	CCWGG	4 cut(s)	247, 314, 529, 970
BciVI	GTATCC	1 cut(s)	1020
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	291, 751
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	1021
BfuAI	ACCTGC	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	1020
BisI	GCNGC	4 cut(s)	11, 304, 567, 945
BlsI	GCNGC	4 cut(s)	12, 305, 568, 946
Bme1390I	CCNGG	5 cut(s)	28, 247, 314, 529, 970
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	30, 310
BmiI	GGNNCC	2 cut(s)	189, 967
BmrFI	CCNGG	5 cut(s)	28, 247, 314, 529, 970
BmsI	GCATC	2 cut(s)	457, 793
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpuEI	CTTGAG	2 cut(s)	125, 531
BpuMI	CCSGG	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	1060
BsaBI	GATNNNNATC	2 cut(s)	332, 402
BsaHI	GRCGYC	2 cut(s)	5, 832
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	2 cut(s)	528, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 758, 759
Bse21I	CCTNAGG	1 cut(s)	170
Bse8I	GATNNNNATC	2 cut(s)	332, 402
BseBI	CCWGG	4 cut(s)	247, 314, 529, 970
BseCI	ATCGAT	1 cut(s)	1060
BseDI	CCNNGG	2 cut(s)	528, 969
BseGI	GGATG	2 cut(s)	102, 910
BseJI	GATNNNNATC	2 cut(s)	332, 402
BseLI	CCNNNNNNNGG	3 cut(s)	518, 758, 759
BseMII	CTCAG	3 cut(s)	184, 265, 302
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	3 cut(s)	290, 578, 931
BseYI	CCCAGC	1 cut(s)	923
Bsh1236I	CGCG	2 cut(s)	48, 788
BshFI	GGCC	1 cut(s)	312
BshNI	GGYRCC	2 cut(s)	187, 965
BshVI	ATCGAT	1 cut(s)	1060
BsiHKAI	GWGCWC	1 cut(s)	778
BsiSI	CCGG	2 cut(s)	28, 264
BslFI	GGGAC	2 cut(s)	10, 940
BslI	CCNNNNNNNGG	3 cut(s)	518, 758, 759
BsmAI	GTCTC	2 cut(s)	291, 751
BsmFI	GGGAC	2 cut(s)	10, 940
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	778, 843
Bsp1407I	TGTACA	1 cut(s)	989
Bsp143I	GATC	4 cut(s)	333, 625, 670, 1057
Bsp68I	TCGCGA	2 cut(s)	48, 788
BspACI	CCGC	2 cut(s)	851, 998
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	183, 264, 301
BspDI	ATCGAT	1 cut(s)	1060
BspFNI	CGCG	2 cut(s)	48, 788
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	189, 967
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	678
BspT107I	GGYRCC	2 cut(s)	187, 965
BspTNI	GGTCTC	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	989
BssECI	CCNNGG	2 cut(s)	528, 969
BssMI	GATC	4 cut(s)	333, 625, 670, 1057
BssNI	GRCGYC	2 cut(s)	5, 832
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	4 cut(s)	247, 314, 529, 970
BstACI	GRCGYC	2 cut(s)	5, 832
BstAUI	TGTACA	1 cut(s)	989
BstC8I	GCNNGC	2 cut(s)	301, 712
BstDEI	CTNAG	4 cut(s)	170, 251, 288, 341
BstF5I	GGATG	2 cut(s)	102, 910
BstFNI	CGCG	2 cut(s)	48, 788
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	336, 628, 673, 1060
BstMAI	GTCTC	2 cut(s)	291, 751
BstMBI	GATC	4 cut(s)	333, 625, 670, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 309, 812
BstNI	CCWGG	4 cut(s)	247, 314, 529, 970
BstNSI	RCATGY	4 cut(s)	423, 624, 987, 998
BstSCI	CCNGG	5 cut(s)	26, 245, 312, 527, 968
BstSFI	CTRYAG	1 cut(s)	1021
BstSLI	GKGCMC	1 cut(s)	843
BstUI	CGCG	2 cut(s)	48, 788
BstV1I	GCAGC	3 cut(s)	290, 578, 931
Bsu15I	ATCGAT	1 cut(s)	1060
Bsu36I	CCTNAGG	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	1020
BsuRI	GGCC	1 cut(s)	312
BsuTUI	ATCGAT	1 cut(s)	1060
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	102, 910
BtsI	GCAGTG	2 cut(s)	267, 498
BtsIMutI	CAGTG	2 cut(s)	267, 498
BtuMI	TCGCGA	2 cut(s)	48, 788
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	2 cut(s)	301, 712
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	30, 310
ClaI	ATCGAT	1 cut(s)	1060
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	145, 990
CviAII	CATG	8 cut(s)	307, 420, 460, 621, 674, 910, 984, 995
CviQI	GTAC	2 cut(s)	145, 990
DdeI	CTNAG	4 cut(s)	170, 251, 288, 341
DpnI	GATC	4 cut(s)	335, 627, 672, 1059
DpnII	GATC	4 cut(s)	333, 625, 670, 1057
DraIII	CACNNNGTG	1 cut(s)	847
EciI	GGCGGA	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	776
Eco24I	GRGCYC	1 cut(s)	778
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	776
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	776
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	4 cut(s)	245, 312, 527, 968
EcoT22I	ATGCAT	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	778
FaeI	CATG	8 cut(s)	310, 423, 463, 624, 677, 913, 987, 998
FaqI	GGGAC	2 cut(s)	10, 940
FatI	CATG	8 cut(s)	306, 419, 459, 620, 673, 909, 983, 994
Fnu4HI	GCNGC	4 cut(s)	11, 304, 567, 945
FokI	GGATG	2 cut(s)	89, 917
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	4 cut(s)	11, 304, 567, 945
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	4 cut(s)	11, 304, 567, 945
GsaI	CCCAGC	1 cut(s)	927
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	2 cut(s)	28, 264
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	2 cut(s)	5, 832
Hin1II	CATG	8 cut(s)	310, 423, 463, 624, 677, 913, 987, 998
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	5 cut(s)	165, 255, 508, 544, 557
HpaII	CCGG	2 cut(s)	28, 264
HphI	GGTGA	4 cut(s)	232, 741, 868, 884
Hpy166II	GTNNAC	1 cut(s)	992
Hpy188I	TCNGA	5 cut(s)	202, 254, 477, 730, 802
Hpy188III	TCNNGA	7 cut(s)	47, 106, 172, 290, 460, 787, 1050
Hpy8I	GTNNAC	1 cut(s)	992
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	832
HpyCH4V	TGCA	9 cut(s)	306, 376, 412, 431, 566, 581, 605, 620, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 309, 812
HpyF3I	CTNAG	4 cut(s)	170, 251, 288, 341
HpySE526I	ACGT	1 cut(s)	832
Hsp92I	GRCGYC	2 cut(s)	5, 832
Hsp92II	CATG	8 cut(s)	310, 423, 463, 624, 677, 913, 987, 998
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	333, 625, 670, 1057
LmnI	GCTCC	2 cut(s)	448, 811
Lsp1109I	GCAGC	3 cut(s)	290, 578, 931
LweI	GCATC	2 cut(s)	457, 793
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	832
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	4 cut(s)	335, 627, 672, 1059
MboI	GATC	4 cut(s)	333, 625, 670, 1057
MboII	GAAGA	2 cut(s)	191, 620
MhlI	GDGCHC	2 cut(s)	778, 843
MluCI	AATT	7 cut(s)	109, 193, 228, 294, 583, 794, 862
MlyI	GAGTC	2 cut(s)	159, 538
MmeI	TCCRAC	1 cut(s)	455
Mph1103I	ATGCAT	1 cut(s)	985
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	503, 678
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	2 cut(s)	28, 264
MspR9I	CCNGG	5 cut(s)	28, 247, 314, 529, 970
MvaI	CCWGG	4 cut(s)	247, 314, 529, 970
MvnI	CGCG	2 cut(s)	48, 788
MwoI	GCNNNNNNNGC	3 cut(s)	278, 309, 812
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	333, 625, 670, 1057
NlaIII	CATG	8 cut(s)	310, 423, 463, 624, 677, 913, 987, 998
NlaIV	GGNNCC	2 cut(s)	189, 967
NmuCI	GTSAC	1 cut(s)	833
NruI	TCGCGA	2 cut(s)	48, 788
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	4 cut(s)	423, 624, 987, 998
OliI	CACNNNNGTG	1 cut(s)	503
PagI	TCATGA	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	590
PciI	ACATGT	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	255, 508, 557
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	4 cut(s)	12, 305, 568, 946
PleI	GAGTC	2 cut(s)	159, 538
PpsI	GAGTC	2 cut(s)	159, 538
PscI	ACATGT	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	778
Psp6I	CCWGG	4 cut(s)	245, 312, 527, 968
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	4 cut(s)	245, 312, 527, 968
PspN4I	GGNNCC	2 cut(s)	189, 967
PspPI	GGNCC	2 cut(s)	30, 310
PvuII	CAGCTG	1 cut(s)	923
RruI	TCGCGA	2 cut(s)	48, 788
RsaI	GTAC	2 cut(s)	146, 991
RsaNI	GTAC	2 cut(s)	145, 990
RseI	CAYNNNNRTG	2 cut(s)	503, 678
SacI	GAGCTC	1 cut(s)	778
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	11, 304, 567, 945
Sau3AI	GATC	4 cut(s)	333, 625, 670, 1057
Sau96I	GGNCC	2 cut(s)	30, 310
SchI	GAGTC	2 cut(s)	159, 538
ScrFI	CCNGG	5 cut(s)	28, 247, 314, 529, 970
SduI	GDGCHC	2 cut(s)	778, 843
SfaNI	GCATC	2 cut(s)	457, 793
SfcI	CTRYAG	1 cut(s)	1021
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	2 cut(s)	503, 678
SmlI	CTYRAG	2 cut(s)	140, 546
SmoI	CTYRAG	2 cut(s)	140, 546
Sse9I	AATT	7 cut(s)	109, 193, 228, 294, 583, 794, 862
SsiI	CCGC	2 cut(s)	851, 998
SspMI	CTAG	1 cut(s)	771
SstI	GAGCTC	1 cut(s)	778
StyD4I	CCNGG	5 cut(s)	26, 245, 312, 527, 968
TaiI	ACGT	1 cut(s)	835
TaqI	TCGA	3 cut(s)	336, 1035, 1060
TasI	AATT	7 cut(s)	109, 193, 228, 294, 583, 794, 862
TatI	WGTACW	1 cut(s)	989
TfiI	GAWTC	3 cut(s)	255, 508, 557
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	274, 505
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	4 cut(s)	10, 303, 566, 944
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	5 cut(s)	240, 450, 620, 875, 950
TspGWI	ACGGA	2 cut(s)	103, 177
TspRI	CASTG	2 cut(s)	274, 505
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	4 cut(s)	109, 193, 583, 862
XceI	RCATGY	4 cut(s)	423, 624, 987, 998
XmnI	GAANNNNTTC	1 cut(s)	259
XspI	CTAG	1 cut(s)	771
ZraI	GACGTC	1 cut(s)	833
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.