pycom02g19740

Ribose-phosphate pyrophosphokinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
17670376 .. 17676561
6186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19740.5

Sequence Viewer

Length: 1209 bp
ATGGCGTCGCTGCTTCACACAGTGTCCCGGTCCCCTCTCGCTTCTCGCAACTCTTTACACACTCGCGCTTACATCCCCAACTTCTCCCGCTCTCGAGTCCCGGTCCAAAACGCCGTCAGGTGTAGTGTGGAAGGGCCTCTCAAGTATGCAAATGGAAAGCCGTGCGTTCCACTCTTCAGGAGTGAAGATATGATATCGAATTTTTCGGCCACGAAAACACATTTGGTGAATGAAATTGGCAAGAATGATACCAGGCTCAGGATCTTTTCGGGCACTGCGAACCCCGCGCTTTCTCAGGAAATTGCTTGCTACATGGGTCTGGAACTTGGAAGGATTAAGATCGATCGCTTTGCTGATGGAGAGATTTATGTTCAGTTGCAAGAGAGTGTAAGAGGGTGTGATGTATATCTTGTGCAACCCACATGTCCTCCTGCAAACGAAAATCTTATGGAGCTTCTGGTCATGATTGATGCTTGTCGGAGGGCTTCAGCCAAGAATATCACTGCTGTGATTCCATATTTTGGCTATGCCAGGGCTGATAGAAAGACTCAAGGGCGTGAATCTATTGCAGCCAAACTTGTTGCAAATTTGATTACAGAAGCAGGTGCAGATCGTGTTCTTGCATGCGATCTTCATTCTGGGCAGTCTATGGGATATTTTGATATTGCTGTGGATCATGTATATGGTCAGCCTGTGATACTTGATTACCTCGCCAGCAAGACTATATGCTCTGATGATTTGGTAGTGGTCTCACCAGATGTTGGGGGTGTTGCTAGAGCTCGTGCATTCGCAAAAAAATTATCTGATGCTCCTTTAGCCATTGTTGATAAAAGACGTCATGGGCACAATGTGGCAGAGGTGATGAATTTGATTGGTGATGTGAAAGGAAAAGTAGCAGTTATGGTGGATGACATGATTGACACAGCTGGGACTATTACGAAAGGTGCTGCCTTACTACATCAAGAGGGTGCCAGGGAAGTCTATGCATGCAGTACGCATGCGGTTTTTAGCCCTCCTGCGATCGAGAGGCTGTCGAGCGGTTTGTTTCAAGAGGTGATCATAACAAATACCATTCCAGTGTCGGAGCAGAATTATTTTCCCCAGCTAACAGTCTTGTCAGTAGCAAATCTTCTGGGCGAGACCATATGGCGTGTTCATGATGACTGCTCTGGTGGCTATGAACCCTATTCCACCTTGGGCATTGATTGA

Protein Analysis

403

Amino Acids

43.72

Weight (kDa)

6.37

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 593
AatII GACGTC 1 cut(s) 838
Acc36I ACCTGC 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 968
AccB7I CCANNNNNTGG 2 cut(s) 521, 761
AccBSI CCGCTC 2 cut(s) 90, 1038
AccII CGCG 2 cut(s) 66, 287
AciI CCGC 4 cut(s) 88, 285, 1001, 1038
AclWI GGATC 2 cut(s) 269, 681
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 199, 586, 865
AcuI CTGAAG 2 cut(s) 160, 471
AcyI GRCGYC 2 cut(s) 5, 835
AdeI CACNNNGTG 2 cut(s) 22, 850
AfaI GTAC 1 cut(s) 994
AfiI CCNNNNNNNGG 3 cut(s) 258, 521, 761
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 1049
AjnI CCWGG 3 cut(s) 251, 530, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AleI CACNNNNGTG 1 cut(s) 506
AluBI AGCT 4 cut(s) 454, 779, 926, 1105
AluI AGCT 4 cut(s) 454, 779, 926, 1105
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 754, 1133
AlwI GGATC 2 cut(s) 269, 681
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 2 cut(s) 134, 207
ApeKI GCWGC 3 cut(s) 10, 569, 947
ApoI RAATTY 3 cut(s) 199, 586, 865
AspLEI GCGC 2 cut(s) 68, 289
AspS9I GGNCC 3 cut(s) 30, 103, 134
AsuC2I CCSGG 2 cut(s) 28, 101
AsuHPI GGTGA 5 cut(s) 238, 744, 871, 887, 1066
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 2 cut(s) 30, 103
BaeGI GKGCMC 2 cut(s) 275, 846
BanI GGYRCC 1 cut(s) 968
BanII GRGCYC 1 cut(s) 781
BarI GAAGNNNNNNTAC 2 cut(s) 1113, 1145
BauI CACGAG 1 cut(s) 780
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 2 cut(s) 581, 934
BccI CCATC 1 cut(s) 350
BceAI ACGGC 2 cut(s) 98, 145
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 3 cut(s) 253, 532, 973
BclI TGATCA 1 cut(s) 1056
BcnI CCSGG 2 cut(s) 28, 101
BcoDI GTCTC 2 cut(s) 754, 1133
BfaI CTAG 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 593
BisI GCNGC 3 cut(s) 11, 570, 948
BlsI GCNGC 3 cut(s) 12, 571, 949
Bme1390I CCNGG 5 cut(s) 28, 101, 253, 532, 973
Bme18I GGWCC 2 cut(s) 30, 103
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 30, 103, 134
BmiI GGNNCC 2 cut(s) 32, 970
BmrFI CCNGG 5 cut(s) 28, 101, 253, 532, 973
BmsI GCATC 2 cut(s) 460, 796
Bpu10I CCTNAGC 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 125, 534
BpuMI CCSGG 2 cut(s) 28, 101
Bsa29I ATCGAT 1 cut(s) 342
BsaBI GATNNNNATC 2 cut(s) 338, 405
BsaHI GRCGYC 2 cut(s) 5, 835
BsaI GGTCTC 2 cut(s) 754, 1133
BsaJI CCNNGG 3 cut(s) 531, 972, 1194
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 521, 761
Bse1I ACTGG 1 cut(s) 1076
Bse8I GATNNNNATC 2 cut(s) 338, 405
BseBI CCWGG 3 cut(s) 253, 532, 973
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 531, 972, 1194
BseGI GGATG 2 cut(s) 72, 913
BseJI GATNNNNATC 2 cut(s) 338, 405
BseLI CCNNNNNNNGG 3 cut(s) 258, 521, 761
BseMII CTCAG 2 cut(s) 271, 308
BseNI ACTGG 1 cut(s) 1076
BseSI GKGCMC 2 cut(s) 275, 846
BseXI GCAGC 2 cut(s) 581, 934
BseYI CCCAGC 2 cut(s) 926, 1101
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 2 cut(s) 66, 287
Bsh1285I CGRYCG 2 cut(s) 346, 1023
BshFI GGCC 2 cut(s) 136, 209
BshNI GGYRCC 1 cut(s) 968
BshVI ATCGAT 1 cut(s) 342
BsiEI CGRYCG 2 cut(s) 346, 1023
BsiHKAI GWGCWC 1 cut(s) 781
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 28, 101
BslFI GGGAC 4 cut(s) 10, 16, 83, 943
BslI CCNNNNNNNGG 3 cut(s) 258, 521, 761
BsmAI GTCTC 2 cut(s) 754, 1133
BsmFI GGGAC 4 cut(s) 10, 16, 83, 943
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 2 cut(s) 136, 209
Bso31I GGTCTC 2 cut(s) 754, 1133
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 275, 781, 846
Bsp143I GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
BspACI CCGC 4 cut(s) 88, 285, 1001, 1038
BspANI GGCC 2 cut(s) 136, 209
BspCNI CTCAG 2 cut(s) 270, 307
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 2 cut(s) 66, 287
BspHI TCATGA 2 cut(s) 462, 1156
BspLI GGNNCC 2 cut(s) 32, 970
BspMI ACCTGC 1 cut(s) 593
BspPI GGATC 2 cut(s) 269, 681
BspT107I GGYRCC 1 cut(s) 968
BspTNI GGTCTC 2 cut(s) 754, 1133
BsrBI CCGCTC 2 cut(s) 90, 1038
BsrI ACTGG 1 cut(s) 1076
BssECI CCNNGG 3 cut(s) 531, 972, 1194
BssMI GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
BssNI GRCGYC 2 cut(s) 5, 835
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 1 cut(s) 1194
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 3 cut(s) 253, 532, 973
Bst4CI ACNGT 2 cut(s) 22, 1111
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 2 cut(s) 5, 835
BstC8I GCNNGC 5 cut(s) 307, 625, 715, 988, 999
BstDEI CTNAG 2 cut(s) 257, 294
BstF5I GGATG 2 cut(s) 72, 913
BstFNI CGCG 2 cut(s) 66, 287
BstHHI GCGC 2 cut(s) 68, 289
BstKTI GATC 8 cut(s) 264, 342, 346, 613, 631, 676, 1023, 1059
BstMAI GTCTC 2 cut(s) 754, 1133
BstMBI GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
BstMCI CGRYCG 2 cut(s) 346, 1023
BstMWI GCNNNNNNNGC 3 cut(s) 284, 815, 1173
BstNI CCWGG 3 cut(s) 253, 532, 973
BstNSI RCATGY 4 cut(s) 426, 627, 990, 1001
BstSCI CCNGG 5 cut(s) 26, 99, 251, 530, 971
BstSLI GKGCMC 2 cut(s) 275, 846
BstUI CGCG 2 cut(s) 66, 287
BstV1I GCAGC 2 cut(s) 581, 934
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 2 cut(s) 136, 209
BsuTUI ATCGAT 1 cut(s) 342
BtsCI GGATG 2 cut(s) 72, 913
BtsI GCAGTG 2 cut(s) 273, 501
BtsIMutI CAGTG 4 cut(s) 27, 273, 501, 1083
BveI ACCTGC 1 cut(s) 593
Cac8I GCNNGC 5 cut(s) 307, 625, 715, 988, 999
CciI TCATGA 2 cut(s) 462, 1156
CfoI GCGC 2 cut(s) 68, 289
Cfr13I GGNCC 3 cut(s) 30, 103, 134
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 1 cut(s) 993
CviQI GTAC 1 cut(s) 993
DdeI CTNAG 2 cut(s) 257, 294
DpnI GATC 8 cut(s) 263, 341, 345, 612, 630, 675, 1022, 1058
DpnII GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
DraIII CACNNNGTG 2 cut(s) 22, 850
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 779
Eco130I CCWWGG 1 cut(s) 1194
Eco24I GRGCYC 1 cut(s) 781
Eco31I GGTCTC 2 cut(s) 754, 1133
Eco32I GATATC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 30, 103
Eco53kI GAGCTC 1 cut(s) 779
Eco57I CTGAAG 2 cut(s) 160, 471
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 251, 530, 971
EcoRV GATATC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 1194
EcoT22I ATGCAT 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 781
ErhI CCWWGG 1 cut(s) 1194
FaqI GGGAC 4 cut(s) 10, 16, 83, 943
FauI CCCGC 2 cut(s) 95, 292
FauNDI CATATG 1 cut(s) 1145
FbaI TGATCA 1 cut(s) 1056
Fnu4HI GCNGC 3 cut(s) 11, 570, 948
FokI GGATG 2 cut(s) 59, 920
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 3 cut(s) 11, 570, 948
FspBI CTAG 1 cut(s) 774
GlaI GCGC 2 cut(s) 67, 288
GluI GCNGC 3 cut(s) 11, 570, 948
GsaI CCCAGC 2 cut(s) 930, 1105
HaeIII GGCC 2 cut(s) 136, 209
HapII CCGG 2 cut(s) 28, 101
HhaI GCGC 2 cut(s) 68, 289
Hin1I GRCGYC 2 cut(s) 5, 835
Hin6I GCGC 2 cut(s) 66, 287
HinP1I GCGC 2 cut(s) 66, 287
HinfI GANTC 4 cut(s) 96, 511, 547, 560
HpaII CCGG 2 cut(s) 28, 101
HphI GGTGA 5 cut(s) 238, 744, 871, 887, 1066
Hpy188I TCNGA 4 cut(s) 480, 733, 805, 1084
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 125, 324
HpyCH4III ACNGT 2 cut(s) 22, 1111
HpyCH4IV ACGT 1 cut(s) 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 815, 1173
HpyF3I CTNAG 2 cut(s) 257, 294
HpySE526I ACGT 1 cut(s) 835
Hsp92I GRCGYC 2 cut(s) 5, 835
HspAI GCGC 2 cut(s) 66, 287
Ksp22I TGATCA 1 cut(s) 1056
Kzo9I GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
LmnI GCTCC 3 cut(s) 451, 814, 1084
Lsp1109I GCAGC 2 cut(s) 581, 934
LweI GCATC 2 cut(s) 460, 796
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 835
MalI GATC 8 cut(s) 263, 341, 345, 612, 630, 675, 1022, 1058
MbiI CCGCTC 2 cut(s) 90, 1038
MboI GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
MboII GAAGA 4 cut(s) 166, 197, 623, 1121
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 3 cut(s) 275, 781, 846
MluCI AATT 7 cut(s) 199, 234, 300, 586, 797, 865, 1090
MlyI GAGTC 2 cut(s) 105, 541
MmeI TCCRAC 2 cut(s) 458, 1062
Mph1103I ATGCAT 1 cut(s) 988
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 3 cut(s) 506, 681, 1076
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 2 cut(s) 28, 101
MspR9I CCNGG 5 cut(s) 28, 101, 253, 532, 973
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 3 cut(s) 253, 532, 973
MvnI CGCG 2 cut(s) 66, 287
MwoI GCNNNNNNNGC 3 cut(s) 284, 815, 1173
NciI CCSGG 2 cut(s) 28, 101
NdeI CATATG 1 cut(s) 1145
NdeII GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
NlaIV GGNNCC 2 cut(s) 32, 970
NsiI ATGCAT 1 cut(s) 988
NspI RCATGY 4 cut(s) 426, 627, 990, 1001
OliI CACNNNNGTG 1 cut(s) 506
PaeI GCATGC 3 cut(s) 627, 990, 1001
PaeR7I CTCGAG 1 cut(s) 93
PagI TCATGA 2 cut(s) 462, 1156
PaqCI CACCTGC 1 cut(s) 593
PciI ACATGT 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 2 cut(s) 511, 560
PflMI CCANNNNNTGG 2 cut(s) 521, 761
PkrI GCNGC 3 cut(s) 12, 571, 949
Ple19I CGATCG 2 cut(s) 346, 1023
PleI GAGTC 2 cut(s) 104, 541
PpsI GAGTC 2 cut(s) 104, 541
PscI ACATGT 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 781
Psp6I CCWGG 3 cut(s) 251, 530, 971
PspFI CCCAGC 2 cut(s) 926, 1101
PspGI CCWGG 3 cut(s) 251, 530, 971
PspN4I GGNNCC 2 cut(s) 32, 970
PspPI GGNCC 3 cut(s) 30, 103, 134
PsuI RGATCY 1 cut(s) 261
PvuI CGATCG 2 cut(s) 346, 1023
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 1 cut(s) 994
RsaNI GTAC 1 cut(s) 993
RseI CAYNNNNRTG 3 cut(s) 506, 681, 1076
SacI GAGCTC 1 cut(s) 781
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 3 cut(s) 11, 570, 948
Sau3AI GATC 8 cut(s) 261, 339, 343, 610, 628, 673, 1020, 1056
Sau96I GGNCC 3 cut(s) 30, 103, 134
SchI GAGTC 2 cut(s) 105, 541
ScrFI CCNGG 5 cut(s) 28, 101, 253, 532, 973
SduI GDGCHC 3 cut(s) 275, 781, 846
SfaNI GCATC 2 cut(s) 460, 796
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 2 cut(s) 30, 103
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 3 cut(s) 506, 681, 1076
SmlI CTYRAG 3 cut(s) 93, 140, 549
SmoI CTYRAG 3 cut(s) 93, 140, 549
SphI GCATGC 3 cut(s) 627, 990, 1001
Sse9I AATT 7 cut(s) 199, 234, 300, 586, 797, 865, 1090
SsiI CCGC 4 cut(s) 88, 285, 1001, 1038
SspMI CTAG 1 cut(s) 774
SstI GAGCTC 1 cut(s) 781
StyD4I CCNGG 5 cut(s) 26, 99, 251, 530, 971
StyI CCWWGG 1 cut(s) 1194
TaaI ACNGT 2 cut(s) 22, 1111
TaiI ACGT 1 cut(s) 838
TaqI TCGA 5 cut(s) 94, 197, 342, 1023, 1034
TasI AATT 7 cut(s) 199, 234, 300, 586, 797, 865, 1090
TfiI GAWTC 2 cut(s) 511, 560
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 4 cut(s) 27, 280, 508, 1083
TseI GCWGC 3 cut(s) 10, 569, 947
TspDTI ATGAA 5 cut(s) 246, 623, 878, 1145, 1194
TspRI CASTG 4 cut(s) 27, 280, 508, 1083
Van91I CCANNNNNTGG 2 cut(s) 521, 761
VpaK11BI GGWCC 2 cut(s) 30, 103
XapI RAATTY 3 cut(s) 199, 586, 865
XceI RCATGY 4 cut(s) 426, 627, 990, 1001
XhoI CTCGAG 1 cut(s) 93
XspI CTAG 1 cut(s) 774
ZraI GACGTC 1 cut(s) 836
Zsp2I ATGCAT 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.