Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004322

Physical Location & Seq

Genomic Coordinates Reverse (-)

7893170 .. 7893693

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07943.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAAGAACCACAGAGCCACTTCCTACTCCCCCACTCGACCTCGTCGGAGCTCTCAGCAGTCACGCTCGGCCGAGCAATCTCCTCTCTCCTCTCCGCTCGCCCCAAAAAGCTACACGACGCCGTTTCGCAGCTCTCTCCTCTTCCTCCTCTCGCCTCCGTCTCCGGCTCCCTCGACGACTCGCTCCGCTTCCTCCACAACTACCTAAACGACGCCGCTCGCCGAAACGAGCCTCTCGATGAAATCCTCATCCCTATGCTCGATCACAATCTGAGGAACAAGGACTCGAAGCACGGCGGCCAAGCTTTGGTGGTTTTGAACTGGCTATTTCAAGATGAAGTGATTTTCCGAGCTGGTTGCGACGGCGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.62

Weight (kDa)

5.79

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57570 AT3G57570
fragaria_vesca	FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_7g07942 FvH4_7g07943
malus_domestica	MD05G1111300.v1.1
prunus_persica	Prupe.8G156400_v2.0.a1 Prupe.8G156400_v2.0.a1
pyrus_communis	pycom05g10710
rosa_chinensis	RchiOBHm_Chr6g0247071 RchiOBHm_Chr7g0177161
rosa_laevigata	RLG00000015224
rosa_multiflora	Rmu_sc0002476.1_g000020 Rmu_sc0004577.1_g000007 Rmu_sc0005310.1_g000018 Rmu_sc0027214.1_g000001
rosa_roxburghii	Rroxscaffold_7G00214360
rosa_rugosa	Rorug05G0522000.1
rosa_samantha	Rh6AG037100 Rh6BG031800 Rh6CG033000 Rh6CG033100 Rh6DG030800 Rh7AG003700 Rh7CG003400
rosa_wichuraiana	Rw6G003180 Rw7G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccBSI	CCGCTC	2 cut(s)	98, 218
AciI	CCGC	4 cut(s)	96, 187, 216, 297
AcoI	YGGCCR	2 cut(s)	70, 298
AcyI	GRCGYC	2 cut(s)	120, 213
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	319, 332
AluBI	AGCT	5 cut(s)	52, 112, 133, 305, 353
AluI	AGCT	5 cut(s)	52, 112, 133, 305, 353
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	166
AoxI	GGCC	2 cut(s)	70, 298
ApeKI	GCWGC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	2 cut(s)	107, 310
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BcoDI	GTCTC	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	369
BisI	GCNGC	3 cut(s)	131, 216, 298
BlsI	GCNGC	3 cut(s)	132, 217, 299
BmiI	GGNNCC	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	120, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	267
BseGI	GGATG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	69, 263
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	4 cut(s)	73, 80, 129, 138
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	72, 300
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	72, 300
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	4 cut(s)	96, 187, 216, 297
BspANI	GGCC	2 cut(s)	72, 300
BspCNI	CTCAG	2 cut(s)	68, 264
BspLI	GGNNCC	1 cut(s)	169
BsrBI	CCGCTC	2 cut(s)	98, 218
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	262
BssNI	GRCGYC	2 cut(s)	120, 213
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	2 cut(s)	120, 213
BstC8I	GCNNGC	2 cut(s)	100, 220
BstDEI	CTNAG	2 cut(s)	55, 272
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	262
BstMCI	CGRYCG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	72, 300
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	100, 220
CfoI	GCGC	1 cut(s)	368
CseI	GACGC	2 cut(s)	128, 221
DdeI	CTNAG	2 cut(s)	55, 272
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	70, 298
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	166
FaiI	YATR	2 cut(s)	257, 373
Fnu4HI	GCNGC	3 cut(s)	131, 216, 298
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	131, 216, 298
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	3 cut(s)	131, 216, 298
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	72, 300
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	2 cut(s)	128, 221
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	2 cut(s)	120, 213
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	179, 284
HpaII	CCGG	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	49, 273, 350
Hpy188III	TCNNGA	2 cut(s)	236, 332
Hpy99I	CGWCG	5 cut(s)	49, 122, 179, 215, 365
HpyF3I	CTNAG	2 cut(s)	55, 272
Hsp92I	GRCGYC	2 cut(s)	120, 213
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	3 cut(s)	49, 173, 189
LpnPI	CCDG	3 cut(s)	178, 307, 339
Lsp1109I	GCAGC	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	264
MbiI	CCGCTC	2 cut(s)	98, 218
MboI	GATC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	17, 134
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	173, 278
MmeI	TCCRAC	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	2 cut(s)	48, 98
NmuCI	GTSAC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PflFI	GACNNNGTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	132, 217, 299
PleI	GAGTC	2 cut(s)	173, 278
PpsI	GAGTC	2 cut(s)	173, 278
Psp124BI	GAGCTC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	3 cut(s)	131, 216, 298
Sau3AI	GATC	1 cut(s)	262
SchI	GAGTC	2 cut(s)	173, 278
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	7 cut(s)	44, 54, 114, 135, 207, 307, 355
SmiMI	CAYNNNNRTG	1 cut(s)	254
SsiI	CCGC	4 cut(s)	96, 187, 216, 297
SstI	GAGCTC	1 cut(s)	54
TaqI	TCGA	5 cut(s)	38, 174, 237, 261, 287
TauI	GCSGC	2 cut(s)	218, 300
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	255, 351
TspGWI	ACGGA	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.