Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027214.1

Orthogroup ID

OG0004322

Physical Location & Seq

Genomic Coordinates Forward (+)

361 .. 1619

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027214.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggaaccacaaagccacttcctactcccccactccgcctcgtcggagttatcagactcatcaccggagtccatgacgtcagtcactctcggccgagcaatctcctctctcctctccgcccgccccaaaaagctccacgacgccgtttcgcggctctctcctctccctctcacctccaccggccacgcctccgtctcaggctccctcgacgactccctccgcttcctcctccactacctaaacgacgccgctcggcgaaacgagcctctcgatgaaatcctcatccctatgctcgataactcattgaagaacaaggactcgaagcacggcggccaggctatggtggttttgaactggctatttcagggcggttttgttttcgaagcgattgccatggctctggtaagagtgatttcgatgaaagatgatcggtttgttgtgcttgggtggtgtacttttgtacgtgctgtattggagtatgagagctctgttactcaatttccgatgaacgggataaaggagaggtatcctgatttgttgaagatactcgcttcgtgcattccgcatctctcagttgttctgcacaaaggaagcaccttgcaggatggatatgaactgccctctcgccttgccgtgtctgctgctgattgttttctggctctctcggaagcattgatcagaaaagctaaagttccaagtaacaaggcaaagttatcagattcaaaggcacaaaagcggccggttactttggtggcccttgatggtggtgataaaaaagcaaaaccagctcctgaatctttagacgcctcaaacatggaattggactatatactttgggatcatttagaggaagttcttggtctagtacagaaactccttgctgtaagttttatacttttgcattttttttttcacctatcttctgcattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.08

Weight (kDa)

6.6

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57570 AT3G57570
fragaria_vesca	FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_2g02670 FvH4_7g07942 FvH4_7g07943
malus_domestica	MD05G1111300.v1.1
prunus_persica	Prupe.8G156400_v2.0.a1 Prupe.8G156400_v2.0.a1
pyrus_communis	pycom05g10710
rosa_chinensis	RchiOBHm_Chr6g0247071 RchiOBHm_Chr7g0177161
rosa_laevigata	RLG00000015224
rosa_multiflora	Rmu_sc0002476.1_g000020 Rmu_sc0004577.1_g000007 Rmu_sc0005310.1_g000018 Rmu_sc0027214.1_g000001
rosa_roxburghii	Rroxscaffold_7G00214360
rosa_rugosa	Rorug05G0522000.1
rosa_samantha	Rh6AG037100 Rh6BG031800 Rh6CG033000 Rh6CG033100 Rh6DG030800 Rh7AG003700 Rh7CG003400
rosa_wichuraiana	Rw6G003180 Rw7G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	151
AclWI	GGATC	1 cut(s)	846
AcoI	YGGCCR	4 cut(s)	91, 181, 331, 737
AcyI	GRCGYC	4 cut(s)	77, 141, 246, 804
AfaI	GTAC	3 cut(s)	454, 462, 867
AfiI	CCNNNNNNNGG	3 cut(s)	150, 340, 509
AgsI	TTSAA	4 cut(s)	307, 352, 541, 723
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	133, 486, 686, 788
AluI	AGCT	4 cut(s)	133, 486, 686, 788
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	846
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	5 cut(s)	91, 181, 331, 737, 753
ApeKI	GCWGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	754
AsuHPI	GGTGA	4 cut(s)	54, 163, 779, 905
AsuII	TTCGAA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	2 cut(s)	599, 755
BceAI	ACGGC	3 cut(s)	128, 343, 617
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	537
BisI	GCNGC	5 cut(s)	152, 249, 331, 642, 737
BlsI	GCNGC	5 cut(s)	153, 250, 332, 643, 738
Bme1390I	CCNGG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	2 cut(s)	6, 202
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	574
BoxI	GACNNNNGTC	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	464
BsaHI	GRCGYC	4 cut(s)	77, 141, 246, 804
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 340, 509
Bse118I	RCCGGY	2 cut(s)	179, 739
Bse1I	ACTGG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	2 cut(s)	282, 610
BseLI	CCNNNNNNNGG	3 cut(s)	150, 340, 509
BseMII	CTCAG	2 cut(s)	210, 585
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	4 cut(s)	94, 101, 150, 218
BseX3I	CGGCCG	2 cut(s)	91, 737
BseXI	GCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	151
Bsh1285I	CGRYCG	2 cut(s)	94, 740
BshFI	GGCC	5 cut(s)	93, 183, 333, 739, 755
BsiEI	CGRYCG	2 cut(s)	94, 740
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	65, 180, 740
BslI	CCNNNNNNNGG	3 cut(s)	150, 340, 509
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	5 cut(s)	93, 183, 333, 739, 755
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	427, 675, 838
Bsp19I	CCATGG	1 cut(s)	393
BspANI	GGCC	5 cut(s)	93, 183, 333, 739, 755
BspCNI	CTCAG	2 cut(s)	209, 584
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	6, 202
BspPI	GGATC	1 cut(s)	846
BspT104I	TTCGAA	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	179, 739
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	2 cut(s)	179, 739
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	427, 675, 838
BssNI	GRCGYC	4 cut(s)	77, 141, 246, 804
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	335
BstACI	GRCGYC	4 cut(s)	77, 141, 246, 804
BstBAI	YACGTR	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	196, 571
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	282, 610
BstFNI	CGCG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	430, 678, 841
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	427, 675, 838
BstMCI	CGRYCG	2 cut(s)	94, 740
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 638, 785
BstNI	CCWGG	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstZI	CGGCCG	2 cut(s)	91, 737
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	5 cut(s)	93, 183, 333, 739, 755
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	282, 610
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr10I	RCCGGY	2 cut(s)	179, 739
Cfr13I	GGNCC	1 cut(s)	754
CseI	GACGC	3 cut(s)	149, 254, 812
Csp6I	GTAC	3 cut(s)	453, 461, 866
CviAII	CATG	3 cut(s)	73, 394, 814
CviQI	GTAC	3 cut(s)	453, 461, 866
DdeI	CTNAG	2 cut(s)	196, 571
DpnI	GATC	3 cut(s)	429, 677, 840
DpnII	GATC	3 cut(s)	427, 675, 838
EaeI	YGGCCR	4 cut(s)	91, 181, 331, 737
EagI	CGGCCG	2 cut(s)	91, 737
EciI	GGCGGA	2 cut(s)	25, 106
Ecl136II	GAGCTC	1 cut(s)	486
EclXI	CGGCCG	2 cut(s)	91, 737
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	488
Eco52I	CGGCCG	2 cut(s)	91, 737
Eco53kI	GAGCTC	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	3 cut(s)	76, 397, 817
FatI	CATG	3 cut(s)	72, 393, 813
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	5 cut(s)	152, 249, 331, 642, 737
FokI	GGATG	2 cut(s)	269, 617
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	5 cut(s)	152, 249, 331, 642, 737
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	5 cut(s)	152, 249, 331, 642, 737
HaeIII	GGCC	5 cut(s)	93, 183, 333, 739, 755
HapII	CCGG	3 cut(s)	65, 180, 740
HgaI	GACGC	3 cut(s)	149, 254, 812
Hin1I	GRCGYC	4 cut(s)	77, 141, 246, 804
Hin1II	CATG	3 cut(s)	76, 397, 817
HinfI	GANTC	6 cut(s)	56, 68, 212, 317, 719, 794
HpaII	CCGG	3 cut(s)	65, 180, 740
HphI	GGTGA	4 cut(s)	54, 163, 779, 905
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	6 cut(s)	46, 55, 504, 667, 680, 718
Hpy188III	TCNNGA	3 cut(s)	269, 530, 791
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	4 cut(s)	46, 143, 212, 248
HpyCH4IV	ACGT	2 cut(s)	77, 463
HpyCH4V	TGCA	5 cut(s)	558, 583, 601, 901, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 638, 785
HpyF3I	CTNAG	2 cut(s)	196, 571
HpySE526I	ACGT	2 cut(s)	77, 463
Hsp92I	GRCGYC	4 cut(s)	77, 141, 246, 804
Hsp92II	CATG	3 cut(s)	76, 397, 817
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	427, 675, 838
LmnI	GCTCC	3 cut(s)	138, 206, 793
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	2 cut(s)	77, 463
MaeIII	GTNAC	4 cut(s)	82, 490, 698, 742
MalI	GATC	3 cut(s)	429, 677, 840
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	3 cut(s)	427, 675, 838
MboII	GAAGA	3 cut(s)	319, 553, 912
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	2 cut(s)	497, 818
MlyI	GAGTC	4 cut(s)	50, 77, 206, 311
MmeI	TCCRAC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	3 cut(s)	65, 180, 740
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	262, 638, 785
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	427, 675, 838
NlaIII	CATG	3 cut(s)	76, 397, 817
NlaIV	GGNNCC	2 cut(s)	6, 202
NmeAIII	GCCGAG	3 cut(s)	69, 119, 232
NmuCI	GTSAC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	719, 794
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	153, 250, 332, 643, 738
PleI	GAGTC	4 cut(s)	50, 76, 206, 311
PpsI	GAGTC	4 cut(s)	50, 76, 206, 311
Ppu21I	YACGTR	1 cut(s)	464
PshAI	GACNNNNGTC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	6, 202
PspPI	GGNCC	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	791
RsaI	GTAC	3 cut(s)	454, 462, 867
RsaNI	GTAC	3 cut(s)	453, 461, 866
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	488
SatI	GCNGC	5 cut(s)	152, 249, 331, 642, 737
Sau3AI	GATC	3 cut(s)	427, 675, 838
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	4 cut(s)	50, 77, 206, 311
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	1 cut(s)	574
SfuI	TTCGAA	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	497, 818
SspMI	CTAG	1 cut(s)	863
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	393
TaiI	ACGT	2 cut(s)	80, 466
TaqI	TCGA	6 cut(s)	207, 270, 294, 320, 381, 416
TasI	AATT	2 cut(s)	497, 818
TatI	WGTACW	2 cut(s)	452, 865
TauI	GCSGC	4 cut(s)	154, 251, 333, 739
TfiI	GAWTC	2 cut(s)	719, 794
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	288, 434, 521, 627
TspGWI	ACGGA	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	340
XspI	CTAG	1 cut(s)	863
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.