Rh6CG033000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004322
Physical Location & Seq
Forward (+)
3106270 .. 3107962
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG033000.1

Sequence Viewer

Length: 1074 bp
ATGGAACCACAAAGCCACTTCCTACTCCCCCACTCCGCCTCGTCGGAGTTATCAGACTCATCACCGGAGTCCATGACGTCAGTCACTCTCGGCCGAGCAATCTCCTCTCTTCTCTCCCCCCGCCCCAAAAAGCTACACGACGCCGTTTTGCGGCTCTCTCCTCTCCCTCTCACCTCCACCGGCCCCGCCTCCGTCTCAGGCTCCCTCGACGACTCCCTCCGCTTCCTCCTCCACTACCTAAACGACGCCGCTCGGCGAAACGAGCCTCTCGATGAAATCCTCATCCCTATGCTCGATAACTCATTGAAGAACAAGGACTCGAAGCACGGCGGCCAGGCTATGGTGGTTTTGAACTGGCTATTTCAGGACGGTTTTGTTTTCGAAGCGATTGCCATGGCTCTGGTAAGAGTGATTTCGACGAAAGATGATCGGTTTGTTGTGCTTGGGTGGTGTACTTTTGTACGTGCTGTATTGGAGTATGAGAGCTCTGTTACTCAATTTCCGATGAACGGGATAAAGGAGAGGTATCCTGATTTGTTGAAGATACTCACTTCGTGCATTCCGCATCTCTCAATTGTTCTGCACAAAGGAAGCACCTTGCAGGATGGATATGAACTGCCCTCTCGCCTTGCCGTGTGTGCTGCTGATTGTTTTCTGGCTCTCTCGGAAGCGTTGATCAGAAAAGCTAAAGTTCCAAGTAACAAGGCAAAGTCATCAGATTTAAAGGCACAAAAGCGGCCGGTTACTTTGGTGGCCCTTGATGGTGGTGATAAGAAAGCAAAACCAGCTCCTGAATCTTTAGACGCCTCAAACATGGAATTGGACTATATACTTTGGGATCATTTAGAGGAAGTTCTTGGTCTAGTACAGAAACTCCTTGCTTGGAGCAGAAAAAGCCGACCCTTACATGCCAAAGGATTGGAGCAAGTGCTTAAGTGGTTGCACGAGATTAAAGGACATTATCGTAACGTGAAAGCTGAGGCAGGTCCTTTACCCATCTTTATATATATTACATATCTTATGATGTCTAATTTGTGTGGGTTACTGGGTTATGATGACTTGTTTGTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

39.6

Weight (kDa)

7.17

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 974
AccB7I CCANNNNNTGG 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 251
AciI CCGC 9 cut(s) 36, 121, 151, 186, 220, 249, 330, 563, 736
AclWI GGATC 1 cut(s) 846
AcoI YGGCCR 3 cut(s) 91, 331, 737
AcyI GRCGYC 4 cut(s) 77, 141, 246, 804
AdeI CACNNNGTG 1 cut(s) 555
AfaI GTAC 3 cut(s) 454, 462, 867
AfiI CCNNNNNNNGG 3 cut(s) 150, 340, 509
AflII CTTAAG 1 cut(s) 932
AgsI TTSAA 3 cut(s) 307, 352, 541
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 5 cut(s) 133, 486, 686, 788, 977
AluI AGCT 5 cut(s) 133, 486, 686, 788, 977
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 846
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 5 cut(s) 91, 181, 331, 737, 753
ApeKI GCWGC 1 cut(s) 641
AspS9I GGNCC 3 cut(s) 182, 754, 986
AsuHPI GGTGA 3 cut(s) 54, 163, 779
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 488
BauI CACGAG 1 cut(s) 944
Bbv12I GWGCWC 1 cut(s) 488
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 1 cut(s) 628
BccI CCATC 3 cut(s) 599, 755, 1004
BceAI ACGGC 3 cut(s) 128, 343, 617
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 1 cut(s) 537
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 932
BfuAI ACCTGC 1 cut(s) 974
BfuI GTATCC 1 cut(s) 537
BisI GCNGC 5 cut(s) 152, 249, 331, 642, 737
BlsI GCNGC 5 cut(s) 153, 250, 332, 643, 738
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 986
BmgT120I GGNCC 3 cut(s) 182, 754, 986
BmiI GGNNCC 3 cut(s) 6, 184, 202
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 1055
BoxI GACNNNNGTC 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 464
BsaHI GRCGYC 4 cut(s) 77, 141, 246, 804
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 340, 509
Bse118I RCCGGY 2 cut(s) 179, 739
Bse1I ACTGG 2 cut(s) 359, 1050
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 282, 610
BseLI CCNNNNNNNGG 3 cut(s) 150, 340, 509
BseMII CTCAG 2 cut(s) 210, 969
BseNI ACTGG 2 cut(s) 359, 1050
BseRI GAGGAG 3 cut(s) 94, 150, 218
BseX3I CGGCCG 2 cut(s) 91, 737
BseXI GCAGC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 566
Bsh1285I CGRYCG 2 cut(s) 94, 740
BshFI GGCC 5 cut(s) 93, 183, 333, 739, 755
BsiEI CGRYCG 2 cut(s) 94, 740
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 3 cut(s) 65, 180, 740
BslI CCNNNNNNNGG 3 cut(s) 150, 340, 509
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 5 cut(s) 93, 183, 333, 739, 755
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 3 cut(s) 427, 675, 838
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 9 cut(s) 36, 121, 151, 186, 220, 249, 330, 563, 736
BspANI GGCC 5 cut(s) 93, 183, 333, 739, 755
BspCNI CTCAG 2 cut(s) 209, 970
BspLI GGNNCC 3 cut(s) 6, 184, 202
BspMI ACCTGC 1 cut(s) 974
BspPI GGATC 1 cut(s) 846
BspT104I TTCGAA 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 932
BsrBI CCGCTC 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 179, 739
BsrI ACTGG 2 cut(s) 359, 1050
BssAI RCCGGY 2 cut(s) 179, 739
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 427, 675, 838
BssNI GRCGYC 4 cut(s) 77, 141, 246, 804
BssSI CACGAG 1 cut(s) 944
BssT1I CCWWGG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 944
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 4 cut(s) 77, 141, 246, 804
BstAFI CTTAAG 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 196, 978
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 282, 610
BstKTI GATC 3 cut(s) 430, 678, 841
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 427, 675, 838
BstMCI CGRYCG 2 cut(s) 94, 740
BstMWI GCNNNNNNNGC 4 cut(s) 262, 638, 785, 894
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 911
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 628
BstXI CCANNNNNNTGG 2 cut(s) 400, 919
BstZI CGGCCG 2 cut(s) 91, 737
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 5 cut(s) 93, 183, 333, 739, 755
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 282, 610
BveI ACCTGC 1 cut(s) 974
CaiI CAGNNNCTG 1 cut(s) 791
Cfr10I RCCGGY 2 cut(s) 179, 739
Cfr13I GGNCC 3 cut(s) 182, 754, 986
CseI GACGC 3 cut(s) 149, 254, 812
Csp6I GTAC 3 cut(s) 453, 461, 866
CviAII CATG 5 cut(s) 73, 394, 814, 908, 1071
CviQI GTAC 3 cut(s) 453, 461, 866
DdeI CTNAG 2 cut(s) 196, 978
DpnI GATC 3 cut(s) 429, 677, 840
DpnII GATC 3 cut(s) 427, 675, 838
DraI TTTAAA 1 cut(s) 723
DraIII CACNNNGTG 1 cut(s) 555
EaeI YGGCCR 3 cut(s) 91, 331, 737
EagI CGGCCG 2 cut(s) 91, 737
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 486
EclXI CGGCCG 2 cut(s) 91, 737
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 986
Eco52I CGGCCG 2 cut(s) 91, 737
Eco53kI GAGCTC 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 5 cut(s) 76, 397, 817, 911, 1074
FatI CATG 5 cut(s) 72, 393, 813, 907, 1070
FauI CCCGC 2 cut(s) 128, 193
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 5 cut(s) 152, 249, 331, 642, 737
FokI GGATG 2 cut(s) 269, 617
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 5 cut(s) 152, 249, 331, 642, 737
FspBI CTAG 1 cut(s) 863
GluI GCNGC 5 cut(s) 152, 249, 331, 642, 737
HaeIII GGCC 5 cut(s) 93, 183, 333, 739, 755
HapII CCGG 3 cut(s) 65, 180, 740
HgaI GACGC 3 cut(s) 149, 254, 812
Hin1I GRCGYC 4 cut(s) 77, 141, 246, 804
Hin1II CATG 5 cut(s) 76, 397, 817, 911, 1074
HinfI GANTC 5 cut(s) 56, 68, 212, 317, 794
HpaII CCGG 3 cut(s) 65, 180, 740
HphI GGTGA 3 cut(s) 54, 163, 779
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 6 cut(s) 46, 55, 504, 667, 680, 718
Hpy188III TCNNGA 4 cut(s) 269, 365, 530, 791
Hpy8I GTNNAC 1 cut(s) 453
Hpy99I CGWCG 5 cut(s) 46, 143, 212, 248, 421
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 3 cut(s) 77, 463, 969
HpyCH4V TGCA 4 cut(s) 558, 583, 601, 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 638, 785, 894
HpyF3I CTNAG 2 cut(s) 196, 978
HpySE526I ACGT 3 cut(s) 77, 463, 969
Hsp92I GRCGYC 4 cut(s) 77, 141, 246, 804
Hsp92II CATG 5 cut(s) 76, 397, 817, 911, 1074
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 3 cut(s) 427, 675, 838
LmnI GCTCC 4 cut(s) 206, 793, 885, 922
Lsp1109I GCAGC 1 cut(s) 628
LweI GCATC 1 cut(s) 574
MaeI CTAG 1 cut(s) 863
MaeII ACGT 3 cut(s) 77, 463, 969
MaeIII GTNAC 7 cut(s) 82, 490, 698, 742, 965, 1041, 1066
MalI GATC 3 cut(s) 429, 677, 840
MbiI CCGCTC 1 cut(s) 251
MboI GATC 3 cut(s) 427, 675, 838
MboII GAAGA 3 cut(s) 101, 319, 553
MfeI CAATTG 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 4 cut(s) 497, 573, 818, 1030
MlyI GAGTC 4 cut(s) 50, 77, 206, 311
MmeI TCCRAC 1 cut(s) 24
MseI TTAA 3 cut(s) 722, 933, 951
MslI CAYNNNNRTG 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 3 cut(s) 65, 180, 740
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 558
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 4 cut(s) 262, 638, 785, 894
NcoI CCATGG 1 cut(s) 393
NdeII GATC 3 cut(s) 427, 675, 838
NlaIII CATG 5 cut(s) 76, 397, 817, 911, 1074
NlaIV GGNNCC 3 cut(s) 6, 184, 202
NmeAIII GCCGAG 3 cut(s) 69, 119, 232
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 911
NspV TTCGAA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 794
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 153, 250, 332, 643, 738
PleI GAGTC 4 cut(s) 50, 76, 206, 311
PpsI GAGTC 4 cut(s) 50, 76, 206, 311
Ppu21I YACGTR 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 986
PshAI GACNNNNGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 6, 184, 202
PspPI GGNCC 3 cut(s) 182, 754, 986
PspPPI RGGWCCY 1 cut(s) 986
PstNI CAGNNNCTG 1 cut(s) 791
RsaI GTAC 3 cut(s) 454, 462, 867
RsaNI GTAC 3 cut(s) 453, 461, 866
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 488
SaqAI TTAA 3 cut(s) 722, 933, 951
SatI GCNGC 5 cut(s) 152, 249, 331, 642, 737
Sau3AI GATC 3 cut(s) 427, 675, 838
Sau96I GGNCC 3 cut(s) 182, 754, 986
SchI GAGTC 4 cut(s) 50, 77, 206, 311
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 488
SfaNI GCATC 1 cut(s) 574
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 4 cut(s) 497, 573, 818, 1030
SsiI CCGC 9 cut(s) 36, 121, 151, 186, 220, 249, 330, 563, 736
SspMI CTAG 1 cut(s) 863
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 3 cut(s) 80, 466, 972
TaqI TCGA 6 cut(s) 207, 270, 294, 320, 381, 416
TasI AATT 4 cut(s) 497, 573, 818, 1030
TatI WGTACW 2 cut(s) 452, 865
TauI GCSGC 4 cut(s) 154, 251, 333, 739
TfiI GAWTC 1 cut(s) 794
Tru1I TTAA 3 cut(s) 722, 933, 951
Tru9I TTAA 3 cut(s) 722, 933, 951
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 288, 521, 627
TspGWI ACGGA 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 932
VpaK11BI GGWCC 1 cut(s) 986
XceI RCATGY 1 cut(s) 911
XspI CTAG 1 cut(s) 863
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.