FvH4_7g08200

Belongs to the universal ribosomal protein uL3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015186
Physical Location & Seq
Forward (+)
8162691 .. 8164300
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08200.t1

Sequence Viewer

Length: 789 bp
ATGGCACTCCTCCCAATCCAAACTGCTCTCTCCCTCTCCTCAAAACCCTCCCTCTTCCTCACCCCCAAAACCCCCTCCCCCCTCCTCCTCACCAAACCCCGCCGCTCCGCCGTCACCGTCATGTCCATGGAGGCCGGCATCGGCGTCATGGCCACCAAGCTCGGCATGATGAGCTTCTTCGAACCCACCGGCAAAGTCGTCCCCGTCACCGTCGTCGGCTTCAAAGAAGGCAACATCATCACCCAGCTCAAAACCCAAGCCACTGACGGCTACGACGCCGTCCAAGTCGGCTACCGCCGCATCCGTGACCGGAAACTCACCAAGCCCGAAATGGGTCACCTCCAGAAAGCCGGCACCATCCCTCTACGTCACCTCCAGGAGTTTCGCCTTCAAAACATCGAAGGGTTCGAGCCCAACCAGAAGCTAGACTTCAACGAGATTTTCAAGGAGGGTGACCTCGTCGACGTCGCCGGAACCACCATCGGAAAAGGGTTTCAGGGAGGGATCAAAAGGCATCACTTCAAGAGGGGGCAGATGACTCATGGGTCCAAGAGTCACAGGCAGCTTGGGTCCATTGGGGCCGGAACGACGCCGGGGAGGGTTTATAAGGGGAAGAAGATGCCTGGGAGGATGGGAGGGACTAAGACTAAGATCAGGAAGCTTAAGATTGTTAAAATTGATAAGGAGCTTAATGTGGTCATGATTAATGGGGCTCTTCCTGGTAAGCCTGGGAATCTTTTGCGTATTACTCCGGCTAAGATTGTAGGGAAGAATATCCCTAAGAGTTAA

Protein Analysis

263

Amino Acids

28.6

Weight (kDa)

10.59

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 140 - 228 4.6e-16 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43030
fragaria_vesca FvH4_7g08200
malus_domestica MD02G1230700.v1.1 MD07G1082200.v1.1
prunus_persica Prupe.2G107400_v2.0.a1
pyrus_communis pycom02g19980 pycom07g06550
rosa_chinensis RchiOBHm_Chr1g0340951
rosa_laevigata RLG00000029053
rosa_multiflora Rmu_sc0002200.1_g000047
rosa_roxburghii Rroxscaffold_4G00311600
rosa_rugosa Rorug01G0160600.1
rosa_samantha Rh1AG175300 Rh1BG143600 Rh1DG175200
rosa_wichuraiana Rw1G014690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AasI GACNNNNNNGTC 1 cut(s) 544
AatII GACGTC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 462
AciI CCGC 5 cut(s) 100, 103, 108, 295, 298
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 1 cut(s) 150
AcyI GRCGYC 4 cut(s) 144, 276, 465, 590
AfiI CCNNNNNNNGG 1 cut(s) 332
AflII CTTAAG 1 cut(s) 662
AgsI TTSAA 5 cut(s) 223, 392, 433, 445, 523
AjnI CCWGG 4 cut(s) 375, 622, 718, 727
AluBI AGCT 7 cut(s) 160, 174, 247, 424, 565, 661, 688
AluI AGCT 7 cut(s) 160, 174, 247, 424, 565, 661, 688
AlwI GGATC 1 cut(s) 512
AoxI GGCC 3 cut(s) 132, 150, 579
ApeKI GCWGC 1 cut(s) 562
AseI ATTAAT 1 cut(s) 705
AspS9I GGNCC 3 cut(s) 546, 570, 579
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 9 cut(s) 52, 82, 106, 199, 232, 310, 329, 362, 464
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 546, 570
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 414, 715
BbvI GCAGC 1 cut(s) 574
BccI CCATC 3 cut(s) 365, 488, 625
BceAI ACGGC 3 cut(s) 95, 263, 283
BciT130I CCWGG 4 cut(s) 377, 624, 720, 729
BcnI CCSGG 1 cut(s) 594
BfaI CTAG 1 cut(s) 425
BfrI CTTAAG 1 cut(s) 662
BisI GCNGC 3 cut(s) 103, 298, 563
BlsI GCNGC 3 cut(s) 104, 299, 564
Bme1390I CCNGG 5 cut(s) 377, 594, 624, 720, 729
Bme18I GGWCC 2 cut(s) 546, 570
BmgT120I GGNCC 3 cut(s) 546, 570, 579
BmiI GGNNCC 5 cut(s) 355, 475, 547, 571, 580
BmrFI CCNGG 5 cut(s) 377, 594, 624, 720, 729
BmsI GCATC 4 cut(s) 147, 309, 523, 609
BpmI CTGGAG 2 cut(s) 326, 359
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 594
BsaHI GRCGYC 4 cut(s) 144, 276, 465, 590
BsaJI CCNNGG 4 cut(s) 126, 593, 623, 728
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse118I RCCGGY 3 cut(s) 134, 188, 350
BseBI CCWGG 4 cut(s) 377, 624, 720, 729
BseDI CCNNGG 4 cut(s) 126, 593, 623, 728
BseGI GGATG 3 cut(s) 300, 357, 636
BseLI CCNNNNNNNGG 1 cut(s) 332
BseRI GAGGAG 3 cut(s) 28, 74, 77
BseXI GCAGC 1 cut(s) 574
BseYI CCCAGC 1 cut(s) 243
BshFI GGCC 3 cut(s) 134, 152, 581
BshNI GGYRCC 1 cut(s) 353
BsiSI CCGG 8 cut(s) 135, 189, 310, 351, 471, 582, 593, 752
BslFI GGGAC 2 cut(s) 185, 652
BslI CCNNNNNNNGG 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 185, 652
BsnI GGCC 3 cut(s) 134, 152, 581
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 414, 715
Bsp143I GATC 2 cut(s) 504, 651
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 5 cut(s) 100, 103, 108, 295, 298
BspANI GGCC 3 cut(s) 134, 152, 581
BspHI TCATGA 1 cut(s) 699
BspLI GGNNCC 5 cut(s) 355, 475, 547, 571, 580
BspPI GGATC 1 cut(s) 512
BspQI GCTCTTC 1 cut(s) 720
BspT104I TTCGAA 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 353
BspTI CTTAAG 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 105
BsrFI RCCGGY 3 cut(s) 134, 188, 350
BssAI RCCGGY 3 cut(s) 134, 188, 350
BssECI CCNNGG 4 cut(s) 126, 593, 623, 728
BssMI GATC 2 cut(s) 504, 651
BssNI GRCGYC 4 cut(s) 144, 276, 465, 590
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 4 cut(s) 377, 624, 720, 729
Bst4CI ACNGT 2 cut(s) 118, 211
Bst6I CTCTTC 2 cut(s) 59, 720
BstACI GRCGYC 4 cut(s) 144, 276, 465, 590
BstAFI CTTAAG 1 cut(s) 662
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 136, 352
BstDEI CTNAG 4 cut(s) 642, 648, 756, 780
BstDSI CCRYGG 1 cut(s) 126
BstEII GGTNACC 2 cut(s) 335, 452
BstF5I GGATG 3 cut(s) 300, 357, 636
BstKTI GATC 2 cut(s) 507, 654
BstMBI GATC 2 cut(s) 504, 651
BstMWI GCNNNNNNNGC 2 cut(s) 171, 297
BstNI CCWGG 4 cut(s) 377, 624, 720, 729
BstPI GGTNACC 2 cut(s) 335, 452
BstSCI CCNGG 5 cut(s) 375, 592, 622, 718, 727
BstV1I GCAGC 1 cut(s) 574
BsuRI GGCC 3 cut(s) 134, 152, 581
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 3 cut(s) 300, 357, 636
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 136, 352
CciI TCATGA 1 cut(s) 699
Cfr10I RCCGGY 3 cut(s) 134, 188, 350
Cfr13I GGNCC 3 cut(s) 546, 570, 579
CseI GACGC 3 cut(s) 133, 284, 598
CviAII CATG 6 cut(s) 121, 127, 148, 166, 542, 700
DdeI CTNAG 4 cut(s) 642, 648, 756, 780
DpnI GATC 2 cut(s) 506, 653
DpnII GATC 2 cut(s) 504, 651
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 59, 720
EarI CTCTTC 2 cut(s) 59, 720
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 2 cut(s) 414, 715
Eco47I GGWCC 2 cut(s) 546, 570
Eco91I GGTNACC 2 cut(s) 335, 452
EcoO65I GGTNACC 2 cut(s) 335, 452
EcoRII CCWGG 4 cut(s) 375, 622, 718, 727
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 2 cut(s) 414, 715
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 6 cut(s) 124, 130, 151, 169, 545, 703
FaiI YATR 7 cut(s) 122, 128, 149, 167, 543, 606, 701
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 2 cut(s) 185, 652
FatI CATG 6 cut(s) 120, 126, 147, 165, 541, 699
FauI CCCGC 1 cut(s) 107
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 3 cut(s) 103, 298, 563
FokI GGATG 3 cut(s) 287, 344, 643
FriOI GRGCYC 2 cut(s) 414, 715
Fsp4HI GCNGC 3 cut(s) 103, 298, 563
FspBI CTAG 1 cut(s) 425
GluI GCNGC 3 cut(s) 103, 298, 563
GsaI CCCAGC 1 cut(s) 247
GsuI CTGGAG 2 cut(s) 326, 359
HaeIII GGCC 3 cut(s) 134, 152, 581
HapII CCGG 8 cut(s) 135, 189, 310, 351, 471, 582, 593, 752
HgaI GACGC 3 cut(s) 133, 284, 598
Hin1I GRCGYC 4 cut(s) 144, 276, 465, 590
Hin1II CATG 6 cut(s) 124, 130, 151, 169, 545, 703
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 3 cut(s) 538, 553, 733
HpaII CCGG 8 cut(s) 135, 189, 310, 351, 471, 582, 593, 752
HphI GGTGA 9 cut(s) 52, 82, 106, 199, 232, 310, 329, 362, 464
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 1 cut(s) 485
Hpy188III TCNNGA 4 cut(s) 343, 523, 655, 700
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 7 cut(s) 215, 218, 278, 464, 467, 470, 592
HpyAV CCTTC 3 cut(s) 221, 395, 398
HpyCH4III ACNGT 2 cut(s) 118, 211
HpyCH4IV ACGT 2 cut(s) 367, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 297
HpyF3I CTNAG 4 cut(s) 642, 648, 756, 780
HpySE526I ACGT 2 cut(s) 367, 465
Hsp92I GRCGYC 4 cut(s) 144, 276, 465, 590
Hsp92II CATG 6 cut(s) 124, 130, 151, 169, 545, 703
KroI GCCGGC 2 cut(s) 134, 350
KroNI GCCGGC 2 cut(s) 136, 352
Kzo9I GATC 2 cut(s) 504, 651
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 2 cut(s) 110, 685
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 4 cut(s) 147, 309, 523, 609
MaeI CTAG 1 cut(s) 425
MaeII ACGT 2 cut(s) 367, 465
MaeIII GTNAC 7 cut(s) 112, 205, 305, 335, 368, 452, 554
MalI GATC 2 cut(s) 506, 653
MbiI CCGCTC 1 cut(s) 105
MboI GATC 2 cut(s) 504, 651
MboII GAAGA 6 cut(s) 46, 169, 625, 628, 707, 781
MhlI GDGCHC 2 cut(s) 414, 715
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 1 cut(s) 675
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 2 cut(s) 532, 562
Mox20I TGGCCA 1 cut(s) 152
MroNI GCCGGC 2 cut(s) 134, 350
MscI TGGCCA 1 cut(s) 152
MseI TTAA 5 cut(s) 663, 672, 690, 705, 787
MslI CAYNNNNRTG 2 cut(s) 119, 125
Msp20I TGGCCA 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 8 cut(s) 135, 189, 310, 351, 471, 582, 593, 752
MspR9I CCNGG 5 cut(s) 377, 594, 624, 720, 729
MvaI CCWGG 4 cut(s) 377, 624, 720, 729
MwoI GCNNNNNNNGC 2 cut(s) 171, 297
NaeI GCCGGC 2 cut(s) 136, 352
NciI CCSGG 1 cut(s) 594
NcoI CCATGG 1 cut(s) 126
NdeII GATC 2 cut(s) 504, 651
NgoMIV GCCGGC 2 cut(s) 134, 350
NlaIII CATG 6 cut(s) 124, 130, 151, 169, 545, 703
NlaIV GGNNCC 5 cut(s) 355, 475, 547, 571, 580
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 7 cut(s) 112, 205, 305, 335, 368, 452, 554
NspV TTCGAA 1 cut(s) 180
PagI TCATGA 1 cut(s) 699
PciSI GCTCTTC 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PdiI GCCGGC 2 cut(s) 136, 352
PfeI GAWTC 1 cut(s) 733
PflFI GACNNNGTC 2 cut(s) 278, 458
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 3 cut(s) 104, 299, 564
PleI GAGTC 2 cut(s) 532, 561
PpsI GAGTC 2 cut(s) 532, 561
PshBI ATTAAT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 4 cut(s) 375, 622, 718, 727
PspEI GGTNACC 2 cut(s) 335, 452
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 4 cut(s) 375, 622, 718, 727
PspN4I GGNNCC 5 cut(s) 355, 475, 547, 571, 580
PspPI GGNCC 3 cut(s) 546, 570, 579
PsyI GACNNNGTC 2 cut(s) 278, 458
RseI CAYNNNNRTG 2 cut(s) 119, 125
SalI GTCGAC 1 cut(s) 461
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 5 cut(s) 663, 672, 690, 705, 787
SatI GCNGC 3 cut(s) 103, 298, 563
Sau3AI GATC 2 cut(s) 504, 651
Sau96I GGNCC 3 cut(s) 546, 570, 579
SchI GAGTC 2 cut(s) 532, 562
ScrFI CCNGG 5 cut(s) 377, 594, 624, 720, 729
SduI GDGCHC 2 cut(s) 414, 715
SfaNI GCATC 4 cut(s) 147, 309, 523, 609
SfuI TTCGAA 1 cut(s) 180
SgrDI CGTCGACG 1 cut(s) 461
SinI GGWCC 2 cut(s) 546, 570
SmiMI CAYNNNNRTG 2 cut(s) 119, 125
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 1 cut(s) 675
SsiI CCGC 5 cut(s) 100, 103, 108, 295, 298
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 5 cut(s) 375, 592, 622, 718, 727
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 118, 211
TaiI ACGT 2 cut(s) 370, 468
TaqI TCGA 4 cut(s) 180, 399, 408, 462
TasI AATT 1 cut(s) 675
TauI GCSGC 2 cut(s) 105, 300
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 5 cut(s) 663, 672, 690, 705, 787
Tru9I TTAA 5 cut(s) 663, 672, 690, 705, 787
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 7 cut(s) 112, 205, 305, 335, 368, 452, 554
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 7 cut(s) 112, 205, 305, 335, 368, 452, 554
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 268
Tth111I GACNNNGTC 2 cut(s) 278, 458
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 546, 570
VspI ATTAAT 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 1 cut(s) 425
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.