MD02G1230700.v1.1

Belongs to the universal ribosomal protein uL3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015186
Physical Location & Seq
Forward (+)
27658359 .. 27659469
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1230700.v1.1.491

Sequence Viewer

Length: 831 bp
ATGTCAATCCTTTCCATTTCATCACCTTCTTCTTCCTCCGCTCTCCTCCCCAATGTCTCCTTCTCCTCCAAATCCTCCTCATTCCTCACCCCGCCGCTCCAAATCGCCACCCCATCGCTCGCCGTCGCAAAAAACCACAAAAACCGACTGACGGGAATAACCATGAGCATGGAGGCCGGCATTGGAGTTATGGCCACGAAGCTCGGCATGATGAGCTTCTTCGAGCCCACCGGCAAAGTCGTCCCGGTCACGGTCGTGGGTTTCAAAGAGGGCAACATCGTCACCCAGGTCAAAACCCAGGCCACCGACGGCTACGACGCCGTCCAAATCGGGTACCGGCGGGTCCGTGACCGGAAGCTAACGAAGCCCGAAATGGGTCACCTCCAGAAGGCCGGCTCGATCCCCCTCCGCCACCTCCAGGAGTTCCGGCTTCAAAACGTCCAAGGGTTCGAGCCGAACCAGAAGCTCTCGTTCGATGAGCTTTTCAACGAGGGCGACATTGTCGACGTCTCTGGAACCACAATCGGAAAGGGGTTTCAGGGAGGAATCAAGCGGCACAATTTCAAGCGGGGGCAGATGACCCACGGGTCCAAGAGCCACAGAGCTCTCGGGTCTATCGGTGCCGGAACCACGCCGGGGCGGGTTTACAAGGGGAAGAAGATGCCCGGGAGAATGGGAGGAACCAAGACCAAGATTAGGAAGCTGAAGATTGTGAAGATCGATAAGGAGCTCAATGTTGTGATGATCAAAGGCGCTCTGCCTGGTAAGCCCGGAAACCTTCTCCGCATTGCTCCTGCTAAAATTGTGGGGAAGAACATTCCCAAGAGTTAG

Protein Analysis

277

Amino Acids

29.72

Weight (kDa)

10.59

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 155 - 242 3.5e-14 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43030
fragaria_vesca FvH4_7g08200
malus_domestica MD02G1230700.v1.1 MD07G1082200.v1.1
prunus_persica Prupe.2G107400_v2.0.a1
pyrus_communis pycom02g19980 pycom07g06550
rosa_chinensis RchiOBHm_Chr1g0340951
rosa_laevigata RLG00000029053
rosa_multiflora Rmu_sc0002200.1_g000047
rosa_roxburghii Rroxscaffold_4G00311600
rosa_rugosa Rorug01G0160600.1
rosa_samantha Rh1AG175300 Rh1BG143600 Rh1DG175200
rosa_wichuraiana Rw1G014690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AatII GACGTC 1 cut(s) 510
Acc65I GGTACC 1 cut(s) 333
AccB1I GGYRCC 2 cut(s) 333, 620
AccBSI CCGCTC 2 cut(s) 41, 97
AccI GTMKAC 1 cut(s) 504
AciI CCGC 9 cut(s) 39, 92, 95, 340, 409, 553, 568, 640, 784
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 725
AcyI GRCGYC 2 cut(s) 318, 507
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 7 cut(s) 151, 250, 374, 388, 418, 636, 696
AgsI TTSAA 4 cut(s) 265, 434, 487, 565
AjnI CCWGG 4 cut(s) 285, 297, 417, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 8 cut(s) 202, 216, 358, 466, 481, 605, 703, 730
AluI AGCT 8 cut(s) 202, 216, 358, 466, 481, 605, 703, 730
Alw21I GWGCWC 2 cut(s) 607, 732
Alw26I GTCTC 2 cut(s) 61, 514
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 2 cut(s) 608, 665
AoxI GGCC 4 cut(s) 174, 192, 300, 390
Asp718I GGTACC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 343, 588
AsuC2I CCSGG 5 cut(s) 245, 636, 666, 667, 771
AsuHPI GGTGA 4 cut(s) 15, 79, 274, 371
AvaI CYCGRG 2 cut(s) 608, 665
AvaII GGWCC 2 cut(s) 343, 588
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 2 cut(s) 333, 620
BanII GRGCYC 3 cut(s) 228, 607, 732
Bbv12I GWGCWC 2 cut(s) 607, 732
BccI CCATC 1 cut(s) 121
BceAI ACGGC 3 cut(s) 107, 305, 325
BciT130I CCWGG 4 cut(s) 287, 299, 419, 762
BclI TGATCA 1 cut(s) 744
BcnI CCSGG 5 cut(s) 245, 636, 666, 667, 771
BcoDI GTCTC 2 cut(s) 61, 514
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 2 cut(s) 95, 554
BlsI GCNGC 2 cut(s) 96, 555
Bme1390I CCNGG 9 cut(s) 245, 287, 299, 419, 636, 666, 667, 762, 771
Bme18I GGWCC 2 cut(s) 343, 588
BmeT110I CYCGRG 2 cut(s) 608, 665
BmgT120I GGNCC 2 cut(s) 343, 588
BmiI GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
BmrFI CCNGG 9 cut(s) 245, 287, 299, 419, 636, 666, 667, 762, 771
BmsI GCATC 1 cut(s) 651
BpmI CTGGAG 2 cut(s) 368, 401
BpuMI CCSGG 5 cut(s) 245, 636, 666, 667, 771
Bsa29I ATCGAT 1 cut(s) 720
BsaHI GRCGYC 2 cut(s) 318, 507
BsaJI CCNNGG 6 cut(s) 285, 297, 442, 583, 635, 665
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 7 cut(s) 151, 250, 374, 388, 418, 636, 696
Bse118I RCCGGY 4 cut(s) 176, 230, 336, 392
Bse3DI GCAATG 1 cut(s) 786
BseBI CCWGG 4 cut(s) 287, 299, 419, 762
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 6 cut(s) 285, 297, 442, 583, 635, 665
BseLI CCNNNNNNNGG 7 cut(s) 151, 250, 374, 388, 418, 636, 696
BseMI GCAATG 1 cut(s) 786
BseRI GAGGAG 3 cut(s) 35, 55, 67
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 176, 194, 302, 392
BshNI GGYRCC 2 cut(s) 333, 620
BshVI ATCGAT 1 cut(s) 720
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 607, 732
BsiHKCI CYCGRG 2 cut(s) 608, 665
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 7 cut(s) 151, 250, 374, 388, 418, 636, 696
BsmAI GTCTC 2 cut(s) 61, 514
BsmBI CGTCTC 1 cut(s) 514
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 4 cut(s) 176, 194, 302, 392
BsoBI CYCGRG 2 cut(s) 608, 665
Bsp1286I GDGCHC 3 cut(s) 228, 607, 732
Bsp143I GATC 3 cut(s) 399, 717, 744
BspACI CCGC 9 cut(s) 39, 92, 95, 340, 409, 553, 568, 640, 784
BspANI GGCC 4 cut(s) 176, 194, 302, 392
BspDI ATCGAT 1 cut(s) 720
BspLI GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 333, 620
BsrBI CCGCTC 2 cut(s) 41, 97
BsrDI GCAATG 1 cut(s) 786
BsrFI RCCGGY 4 cut(s) 176, 230, 336, 392
BssAI RCCGGY 4 cut(s) 176, 230, 336, 392
BssECI CCNNGG 6 cut(s) 285, 297, 442, 583, 635, 665
BssMI GATC 3 cut(s) 399, 717, 744
BssNI GRCGYC 2 cut(s) 318, 507
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 4 cut(s) 287, 299, 419, 762
Bst4CI ACNGT 1 cut(s) 253
BstACI GRCGYC 2 cut(s) 318, 507
BstC8I GCNNGC 3 cut(s) 120, 178, 394
BstDSI CCRYGG 1 cut(s) 583
BstEII GGTNACC 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 3 cut(s) 402, 720, 747
BstMAI GTCTC 2 cut(s) 61, 514
BstMBI GATC 3 cut(s) 399, 717, 744
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 213, 364, 766
BstNI CCWGG 4 cut(s) 287, 299, 419, 762
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 9 cut(s) 243, 285, 297, 417, 634, 664, 665, 760, 769
BstXI CCANNNNNNTGG 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 720
BsuRI GGCC 4 cut(s) 176, 194, 302, 392
BsuTUI ATCGAT 1 cut(s) 720
BtgI CCRYGG 1 cut(s) 583
BtgZI GCGATG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 120, 178, 394
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 4 cut(s) 176, 230, 336, 392
Cfr13I GGNCC 2 cut(s) 343, 588
Cfr9I CCCGGG 1 cut(s) 665
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 334
CviAII CATG 3 cut(s) 163, 169, 208
CviQI GTAC 1 cut(s) 334
DpnI GATC 3 cut(s) 401, 719, 746
DpnII GATC 3 cut(s) 399, 717, 744
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 1 cut(s) 398
Ecl136II GAGCTC 2 cut(s) 605, 730
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 3 cut(s) 228, 607, 732
Eco47I GGWCC 2 cut(s) 343, 588
Eco53kI GAGCTC 2 cut(s) 605, 730
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 2 cut(s) 608, 665
Eco91I GGTNACC 1 cut(s) 377
EcoICRI GAGCTC 2 cut(s) 605, 730
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 4 cut(s) 285, 297, 417, 760
EcoT14I CCWWGG 1 cut(s) 442
EcoT38I GRGCYC 3 cut(s) 228, 607, 732
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 3 cut(s) 166, 172, 211
FaiI YATR 4 cut(s) 164, 170, 191, 209
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 162, 168, 207
FauI CCCGC 4 cut(s) 99, 333, 561, 633
FbaI TGATCA 1 cut(s) 744
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 95, 554
FriOI GRGCYC 3 cut(s) 228, 607, 732
Fsp4HI GCNGC 2 cut(s) 95, 554
GlaI GCGC 1 cut(s) 754
GluI GCNGC 2 cut(s) 95, 554
GsuI CTGGAG 2 cut(s) 368, 401
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 4 cut(s) 176, 194, 302, 392
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 2 cut(s) 318, 507
Hin1II CATG 3 cut(s) 166, 172, 211
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 1 cut(s) 546
HphI GGTGA 4 cut(s) 15, 79, 274, 371
Hpy166II GTNNAC 2 cut(s) 505, 646
Hpy188I TCNGA 1 cut(s) 527
Hpy188III TCNNGA 2 cut(s) 385, 513
Hpy8I GTNNAC 2 cut(s) 505, 646
Hpy99I CGWCG 4 cut(s) 128, 311, 320, 509
HpyAV CCTTC 4 cut(s) 36, 70, 382, 788
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 438, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 364, 766
HpySE526I ACGT 2 cut(s) 438, 507
Hsp92I GRCGYC 2 cut(s) 318, 507
Hsp92II CATG 3 cut(s) 166, 172, 211
HspAI GCGC 1 cut(s) 753
KpnI GGTACC 1 cut(s) 337
KroI GCCGGC 2 cut(s) 176, 392
KroNI GCCGGC 2 cut(s) 178, 394
Ksp22I TGATCA 1 cut(s) 744
Kzo9I GATC 3 cut(s) 399, 717, 744
LmnI GCTCC 3 cut(s) 102, 727, 796
LweI GCATC 1 cut(s) 651
MaeII ACGT 2 cut(s) 438, 507
MaeIII GTNAC 4 cut(s) 247, 280, 347, 377
MalI GATC 3 cut(s) 401, 719, 746
MbiI CCGCTC 2 cut(s) 41, 97
MboI GATC 3 cut(s) 399, 717, 744
MboII GAAGA 8 cut(s) 21, 24, 211, 667, 670, 718, 727, 823
MhlI GDGCHC 3 cut(s) 228, 607, 732
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 2 cut(s) 559, 801
MluNI TGGCCA 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 194
MroNI GCCGGC 2 cut(s) 176, 392
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 167, 254
Msp20I TGGCCA 1 cut(s) 194
MspR9I CCNGG 9 cut(s) 245, 287, 299, 419, 636, 666, 667, 762, 771
MvaI CCWGG 4 cut(s) 287, 299, 419, 762
MwoI GCNNNNNNNGC 3 cut(s) 213, 364, 766
NaeI GCCGGC 2 cut(s) 178, 394
NciI CCSGG 5 cut(s) 245, 636, 666, 667, 771
NdeII GATC 3 cut(s) 399, 717, 744
NgoMIV GCCGGC 2 cut(s) 176, 392
NlaIII CATG 3 cut(s) 166, 172, 211
NlaIV GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
NmeAIII GCCGAG 1 cut(s) 183
NmuCI GTSAC 4 cut(s) 247, 280, 347, 377
OliI CACNNNNGTG 1 cut(s) 254
PdiI GCCGGC 2 cut(s) 178, 394
PfeI GAWTC 1 cut(s) 546
PflFI GACNNNGTC 2 cut(s) 320, 500
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 2 cut(s) 96, 555
Psp124BI GAGCTC 2 cut(s) 607, 732
Psp6I CCWGG 4 cut(s) 285, 297, 417, 760
PspEI GGTNACC 1 cut(s) 377
PspGI CCWGG 4 cut(s) 285, 297, 417, 760
PspN4I GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
PspPI GGNCC 2 cut(s) 343, 588
PsyI GACNNNGTC 2 cut(s) 320, 500
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 167, 254
SacI GAGCTC 2 cut(s) 607, 732
SalI GTCGAC 1 cut(s) 503
SatI GCNGC 2 cut(s) 95, 554
Sau3AI GATC 3 cut(s) 399, 717, 744
Sau96I GGNCC 2 cut(s) 343, 588
ScrFI CCNGG 9 cut(s) 245, 287, 299, 419, 636, 666, 667, 762, 771
SduI GDGCHC 3 cut(s) 228, 607, 732
SfaNI GCATC 1 cut(s) 651
SinI GGWCC 2 cut(s) 343, 588
SmaI CCCGGG 1 cut(s) 667
SmiMI CAYNNNNRTG 2 cut(s) 167, 254
Sse9I AATT 2 cut(s) 559, 801
SsiI CCGC 9 cut(s) 39, 92, 95, 340, 409, 553, 568, 640, 784
SstI GAGCTC 2 cut(s) 607, 732
StyD4I CCNGG 9 cut(s) 243, 285, 297, 417, 634, 664, 665, 760, 769
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 441, 510
TaqI TCGA 6 cut(s) 222, 398, 450, 474, 504, 720
TasI AATT 2 cut(s) 559, 801
TauI GCSGC 2 cut(s) 97, 556
TfiI GAWTC 1 cut(s) 546
TseFI GTSAC 4 cut(s) 247, 280, 347, 377
Tsp45I GTSAC 4 cut(s) 247, 280, 347, 377
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 335
TspMI CCCGGG 1 cut(s) 665
Tth111I GACNNNGTC 2 cut(s) 320, 500
VpaK11BI GGWCC 2 cut(s) 343, 588
XagI CCTNNNNNAGG 1 cut(s) 386
XmaI CCCGGG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 504
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.