Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002200.1

Orthogroup ID

OG0015186

Physical Location & Seq

Genomic Coordinates Forward (+)

209299 .. 210093

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002200.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggcactccttccgattcaaaatgctctccttcccaatctcaaaccctctcccttcctcacacccaaaaacccattccccctcctcaccaaaacccacaagaagccccactccacagtcaccatgatgagcatggaggccggcatcggcgtcatggccaccaagctcggcatgatgagcttcttcgaacccaacggcaaggtcgtccccgtcaccgtcgtcggcttcaaagaaggcaacattgtcacccaaatcaaaacccaagccaccgacggctacgacgccgtccaagtcggctaccgccgcatccgcgaccggaaactcaccaagcccgaaatgggccatctcaacaaggccggcgcaatccctctgcgccacctccaggagtttcgtcttcaggacgttgaagggtttgagcccaaccagaagcttgatttcagcgagctcttcaacgagggtgacctcgtcgacgtcgccggaaccacgatcgggaaagggtttcagggtgggattaagaggcaccatttcaagagggggctgatgactcatgggtccaagagtcacagacagcttgggtcgattggggccggaaccacgccggggagggtttacaaggggaagaagatgcctgggagaatgggagggactaagaccaagatcaggaagctcaagattgtcaagattgataaggacctcaatgtggttatgattaatggtgctcttcctggtaagcctgggaaccttctccgcattactccggctaagattgtaggaaagaacatccctaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

264

Amino Acids

28.88

Weight (kDa)

10.4

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43030
fragaria_vesca	FvH4_7g08200
malus_domestica	MD02G1230700.v1.1 MD07G1082200.v1.1
prunus_persica	Prupe.2G107400_v2.0.a1
pyrus_communis	pycom02g19980 pycom07g06550
rosa_chinensis	RchiOBHm_Chr1g0340951
rosa_laevigata	RLG00000029053
rosa_multiflora	Rmu_sc0002200.1_g000047
rosa_roxburghii	Rroxscaffold_4G00311600
rosa_rugosa	Rorug01G0160600.1
rosa_samantha	Rh1AG175300 Rh1BG143600 Rh1DG175200
rosa_wichuraiana	Rw1G014690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	301, 304, 310, 748
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	3 cut(s)	150, 282, 471
AfiI	CCNNNNNNNGG	6 cut(s)	338, 382, 489, 600, 660, 700
AgsI	TTSAA	5 cut(s)	20, 229, 407, 451, 529
AjnI	CCWGG	4 cut(s)	381, 628, 724, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	6 cut(s)	166, 180, 430, 445, 571, 667
AluI	AGCT	6 cut(s)	166, 180, 430, 445, 571, 667
Alw21I	GWGCWC	2 cut(s)	447, 721
AoxI	GGCC	5 cut(s)	138, 156, 340, 354, 585
AseI	ATTAAT	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	362, 375
AspS9I	GGNCC	4 cut(s)	340, 552, 585, 691
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	6 cut(s)	79, 112, 205, 238, 316, 470
AsuII	TTCGAA	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	552, 691
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	2 cut(s)	420, 447
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	447, 721
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	3 cut(s)	211, 269, 289
BciT130I	CCWGG	4 cut(s)	383, 630, 726, 735
BcnI	CCSGG	1 cut(s)	600
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	5 cut(s)	383, 600, 630, 726, 735
Bme18I	GGWCC	2 cut(s)	552, 691
BmgT120I	GGNCC	4 cut(s)	340, 552, 585, 691
BmiI	GGNNCC	6 cut(s)	481, 521, 553, 586, 592, 740
BmrFI	CCNGG	5 cut(s)	383, 600, 630, 726, 735
BmsI	GCATC	3 cut(s)	153, 315, 615
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	600
BsaHI	GRCGYC	3 cut(s)	150, 282, 471
BsaJI	CCNNGG	3 cut(s)	599, 629, 734
BsaWI	WCCGGW	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	6 cut(s)	338, 382, 489, 600, 660, 700
Bse118I	RCCGGY	2 cut(s)	140, 356
BseBI	CCWGG	4 cut(s)	383, 630, 726, 735
BseDI	CCNNGG	3 cut(s)	599, 629, 734
BseGI	GGATG	2 cut(s)	306, 780
BseLI	CCNNNNNNNGG	6 cut(s)	338, 382, 489, 600, 660, 700
BseRI	GAGGAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	2 cut(s)	316, 489
BshFI	GGCC	5 cut(s)	140, 158, 342, 356, 587
BshNI	GGYRCC	1 cut(s)	519
BsiEI	CGRYCG	2 cut(s)	316, 489
BsiHKAI	GWGCWC	2 cut(s)	447, 721
BsiSI	CCGG	7 cut(s)	141, 316, 357, 477, 588, 599, 758
BslFI	GGGAC	2 cut(s)	191, 658
BslI	CCNNNNNNNGG	6 cut(s)	338, 382, 489, 600, 660, 700
BsmFI	GGGAC	2 cut(s)	191, 658
BsnI	GGCC	5 cut(s)	140, 158, 342, 356, 587
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	3 cut(s)	420, 447, 721
Bsp143I	GATC	2 cut(s)	486, 657
BspACI	CCGC	4 cut(s)	301, 304, 310, 748
BspANI	GGCC	5 cut(s)	140, 158, 342, 356, 587
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	6 cut(s)	481, 521, 553, 586, 592, 740
BspQI	GCTCTTC	2 cut(s)	452, 726
BspT104I	TTCGAA	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	519
BsrFI	RCCGGY	2 cut(s)	140, 356
BssAI	RCCGGY	2 cut(s)	140, 356
BssECI	CCNNGG	3 cut(s)	599, 629, 734
BssMI	GATC	2 cut(s)	486, 657
BssNI	GRCGYC	3 cut(s)	150, 282, 471
Bst2UI	CCWGG	4 cut(s)	383, 630, 726, 735
Bst4CI	ACNGT	2 cut(s)	118, 217
Bst6I	CTCTTC	2 cut(s)	452, 726
BstACI	GRCGYC	3 cut(s)	150, 282, 471
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	142, 358, 443
BstDEI	CTNAG	3 cut(s)	648, 762, 786
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	306, 780
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	362, 375
BstKTI	GATC	2 cut(s)	489, 660
BstMBI	GATC	2 cut(s)	486, 657
BstMCI	CGRYCG	2 cut(s)	316, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 303, 309
BstNI	CCWGG	4 cut(s)	383, 630, 726, 735
BstPI	GGTNACC	1 cut(s)	458
BstSCI	CCNGG	5 cut(s)	381, 598, 628, 724, 733
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	386
BsuRI	GGCC	5 cut(s)	140, 158, 342, 356, 587
BtsCI	GGATG	2 cut(s)	306, 780
Cac8I	GCNNGC	3 cut(s)	142, 358, 443
CfoI	GCGC	2 cut(s)	362, 375
Cfr10I	RCCGGY	2 cut(s)	140, 356
Cfr13I	GGNCC	4 cut(s)	340, 552, 585, 691
CseI	GACGC	2 cut(s)	139, 290
CviAII	CATG	5 cut(s)	124, 133, 154, 172, 548
DdeI	CTNAG	3 cut(s)	648, 762, 786
DpnI	GATC	2 cut(s)	488, 659
DpnII	GATC	2 cut(s)	486, 657
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	452, 726
EarI	CTCTTC	2 cut(s)	452, 726
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	420, 447
Eco47I	GGWCC	2 cut(s)	552, 691
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	691
EcoO65I	GGTNACC	1 cut(s)	458
EcoRII	CCWGG	4 cut(s)	381, 628, 724, 733
EcoT38I	GRGCYC	2 cut(s)	420, 447
FaeI	CATG	5 cut(s)	127, 136, 157, 175, 551
FaiI	YATR	6 cut(s)	125, 134, 155, 173, 549, 707
FaqI	GGGAC	2 cut(s)	191, 658
FatI	CATG	5 cut(s)	123, 132, 153, 171, 547
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	2 cut(s)	293, 767
FriOI	GRGCYC	2 cut(s)	420, 447
Fsp4HI	GCNGC	1 cut(s)	304
GlaI	GCGC	2 cut(s)	361, 374
GluI	GCNGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	5 cut(s)	140, 158, 342, 356, 587
HapII	CCGG	7 cut(s)	141, 316, 357, 477, 588, 599, 758
HgaI	GACGC	2 cut(s)	139, 290
HhaI	GCGC	2 cut(s)	362, 375
Hin1I	GRCGYC	3 cut(s)	150, 282, 471
Hin1II	CATG	5 cut(s)	127, 136, 157, 175, 551
Hin6I	GCGC	2 cut(s)	360, 373
HinP1I	GCGC	2 cut(s)	360, 373
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	16, 544, 559
HpaII	CCGG	7 cut(s)	141, 316, 357, 477, 588, 599, 758
HphI	GGTGA	6 cut(s)	79, 112, 205, 238, 316, 470
Hpy166II	GTNNAC	2 cut(s)	469, 610
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	6 cut(s)	398, 490, 529, 661, 670, 679
Hpy8I	GTNNAC	2 cut(s)	469, 610
Hpy99I	CGWCG	7 cut(s)	221, 224, 275, 284, 470, 473, 476
HpyAV	CCTTC	6 cut(s)	20, 41, 64, 227, 401, 752
HpyCH4III	ACNGT	2 cut(s)	118, 217
HpyCH4IV	ACGT	2 cut(s)	402, 471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 303, 309
HpyF3I	CTNAG	3 cut(s)	648, 762, 786
HpySE526I	ACGT	2 cut(s)	402, 471
Hsp92I	GRCGYC	3 cut(s)	150, 282, 471
Hsp92II	CATG	5 cut(s)	127, 136, 157, 175, 551
HspAI	GCGC	2 cut(s)	360, 373
KroI	GCCGGC	2 cut(s)	140, 356
KroNI	GCCGGC	2 cut(s)	142, 358
Kzo9I	GATC	2 cut(s)	486, 657
LguI	GCTCTTC	2 cut(s)	452, 726
LweI	GCATC	3 cut(s)	153, 315, 615
MaeII	ACGT	2 cut(s)	402, 471
MaeIII	GTNAC	5 cut(s)	118, 211, 244, 458, 560
MalI	GATC	2 cut(s)	488, 659
MboI	GATC	2 cut(s)	486, 657
MboII	GAAGA	6 cut(s)	175, 386, 439, 631, 634, 713
MhlI	GDGCHC	3 cut(s)	420, 447, 721
MlsI	TGGCCA	1 cut(s)	158
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	2 cut(s)	538, 568
Mox20I	TGGCCA	1 cut(s)	158
MroNI	GCCGGC	2 cut(s)	140, 356
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	3 cut(s)	513, 711, 793
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	7 cut(s)	141, 316, 357, 477, 588, 599, 758
MspR9I	CCNGG	5 cut(s)	383, 600, 630, 726, 735
MvaI	CCWGG	4 cut(s)	383, 630, 726, 735
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	177, 303, 309
NaeI	GCCGGC	2 cut(s)	142, 358
NciI	CCSGG	1 cut(s)	600
NdeII	GATC	2 cut(s)	486, 657
NgoMIV	GCCGGC	2 cut(s)	140, 356
NlaIII	CATG	5 cut(s)	127, 136, 157, 175, 551
NlaIV	GGNNCC	6 cut(s)	481, 521, 553, 586, 592, 740
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	5 cut(s)	118, 211, 244, 458, 560
NspV	TTCGAA	1 cut(s)	186
PciSI	GCTCTTC	2 cut(s)	452, 726
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdiI	GCCGGC	2 cut(s)	142, 358
PfeI	GAWTC	1 cut(s)	16
PflFI	GACNNNGTC	2 cut(s)	284, 464
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	305
Ple19I	CGATCG	1 cut(s)	489
PleI	GAGTC	2 cut(s)	538, 567
PpsI	GAGTC	2 cut(s)	538, 567
PpuMI	RGGWCCY	1 cut(s)	691
PshBI	ATTAAT	1 cut(s)	711
Psp124BI	GAGCTC	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	4 cut(s)	381, 628, 724, 733
PspEI	GGTNACC	1 cut(s)	458
PspGI	CCWGG	4 cut(s)	381, 628, 724, 733
PspN4I	GGNNCC	6 cut(s)	481, 521, 553, 586, 592, 740
PspPI	GGNCC	4 cut(s)	340, 552, 585, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsyI	GACNNNGTC	2 cut(s)	284, 464
PvuI	CGATCG	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	467
SapI	GCTCTTC	2 cut(s)	452, 726
SaqAI	TTAA	3 cut(s)	513, 711, 793
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	486, 657
Sau96I	GGNCC	4 cut(s)	340, 552, 585, 691
SchI	GAGTC	2 cut(s)	538, 568
ScrFI	CCNGG	5 cut(s)	383, 600, 630, 726, 735
SduI	GDGCHC	3 cut(s)	420, 447, 721
SfaNI	GCATC	3 cut(s)	153, 315, 615
SfuI	TTCGAA	1 cut(s)	186
SgrDI	CGTCGACG	1 cut(s)	467
SinI	GGWCC	2 cut(s)	552, 691
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SsiI	CCGC	4 cut(s)	301, 304, 310, 748
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	5 cut(s)	381, 598, 628, 724, 733
TaaI	ACNGT	2 cut(s)	118, 217
TaiI	ACGT	2 cut(s)	405, 474
TaqI	TCGA	3 cut(s)	186, 468, 578
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	513, 711, 793
Tru9I	TTAA	3 cut(s)	513, 711, 793
TseFI	GTSAC	5 cut(s)	118, 211, 244, 458, 560
Tsp45I	GTSAC	5 cut(s)	118, 211, 244, 458, 560
Tth111I	GACNNNGTC	2 cut(s)	284, 464
VpaK11BI	GGWCC	2 cut(s)	552, 691
VspI	ATTAAT	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	2 cut(s)	130, 334
XmiI	GTMKAC	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.