RLG00000029053

Belongs to the universal ribosomal protein uL3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015186
Physical Location & Seq
Reverse (-)
32074886 .. 32075947
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029053

Sequence Viewer

Length: 807 bp
ATGGCACTCCTTCCCATTCAAAATGCTCTCCTTCCCAACCTCTCACTCTCCTCAAAACCCTCTCCCTTCCTCACCCCCAAAAACCCATTCACCCTCCTCACCAAAACCCACAAGAAGCCCCGCTCCACAGTCACCATGATGAGCATGGAGGCCGGCATCGGCGTCATGGCCACCAAGCTCGGCATGATGAGCTTCTTCGAACCCAACGGCAAGGTCGTCCCCGTCACCGTCGTCGGCTTCAAAGAAGGCAACATTGTCACCCAAATCAAAACCCAAGCCACCGACGGCTACGACGCCGTCCAAGTCGGCTACCGCCGCATCCGCGACCGGAAACTCACCAAGCCCGAAATGGGCCATCTCAACAAGGCCGGCGCAATCCCACTCCGCCACCTCCAGGAGTTTCGTCTTCAGGACGTTGAAGGGTTTGAGCCCAACCAGAAGCTTGATTTCAGCGAGCTTTTCAAGGAGGGTGACCTCGTCGACGTCGCCGGAACCACGATCGGAAAAGGGTTTCAGGGTGGGATTAAGAGGCACCATTTCAAGAGGGGGCTGATGACTCATGGGTCCAAGAGTCACAGACAGCTTGGGTCGATTGGGGCCGGAACCACGCCGGGGAGGGTTTACAAGGGGAAGAAGATGCCTGGGAGAATGGGAGGGACTAAGACCAAGATTAGGAAGCTCAAGATTGTCAAGATTGATAAGGACCTCAATGTGGTTATGATTAATGGTGCTCTTCCTGGTAAGCCTGGGAACCTTCTCCGCATTACTCCGGCTAAGATTGTAGGAAAGAATATCCCTAAGAGTTAA

Protein Analysis

269

Amino Acids

29.29

Weight (kDa)

10.48

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 147 - 234 8e-16 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43030
fragaria_vesca FvH4_7g08200
malus_domestica MD02G1230700.v1.1 MD07G1082200.v1.1
prunus_persica Prupe.2G107400_v2.0.a1
pyrus_communis pycom02g19980 pycom07g06550
rosa_chinensis RchiOBHm_Chr1g0340951
rosa_laevigata RLG00000029053
rosa_multiflora Rmu_sc0002200.1_g000047
rosa_roxburghii Rroxscaffold_4G00311600
rosa_rugosa Rorug01G0160600.1
rosa_samantha Rh1AG175300 Rh1BG143600 Rh1DG175200
rosa_wichuraiana Rw1G014690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 562
AatII GACGTC 1 cut(s) 486
AccB1I GGYRCC 1 cut(s) 531
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 324
AciI CCGC 6 cut(s) 121, 313, 316, 322, 385, 760
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 392
AcyI GRCGYC 3 cut(s) 162, 294, 483
AfiI CCNNNNNNNGG 5 cut(s) 350, 394, 612, 672, 712
AgsI TTSAA 5 cut(s) 20, 241, 419, 463, 541
AjnI CCWGG 4 cut(s) 393, 640, 736, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 6 cut(s) 178, 192, 442, 457, 583, 679
AluI AGCT 6 cut(s) 178, 192, 442, 457, 583, 679
Alw21I GWGCWC 1 cut(s) 733
AoxI GGCC 5 cut(s) 150, 168, 352, 366, 597
AseI ATTAAT 1 cut(s) 723
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 4 cut(s) 352, 564, 597, 703
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 8 cut(s) 64, 82, 91, 124, 217, 250, 328, 482
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 2 cut(s) 564, 703
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 733
BccI CCATC 1 cut(s) 363
BceAI ACGGC 3 cut(s) 223, 281, 301
BciT130I CCWGG 4 cut(s) 395, 642, 738, 747
BcnI CCSGG 1 cut(s) 612
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 5 cut(s) 395, 612, 642, 738, 747
Bme18I GGWCC 2 cut(s) 564, 703
BmgT120I GGNCC 4 cut(s) 352, 564, 597, 703
BmiI GGNNCC 6 cut(s) 493, 533, 565, 598, 604, 752
BmrFI CCNGG 5 cut(s) 395, 612, 642, 738, 747
BmsI GCATC 3 cut(s) 165, 327, 627
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 612
BsaHI GRCGYC 3 cut(s) 162, 294, 483
BsaJI CCNNGG 3 cut(s) 611, 641, 746
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 5 cut(s) 350, 394, 612, 672, 712
Bse118I RCCGGY 2 cut(s) 152, 368
BseBI CCWGG 4 cut(s) 395, 642, 738, 747
BseDI CCNNGG 3 cut(s) 611, 641, 746
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 5 cut(s) 350, 394, 612, 672, 712
BseRI GAGGAG 2 cut(s) 40, 86
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 2 cut(s) 328, 501
BshFI GGCC 5 cut(s) 152, 170, 354, 368, 599
BshNI GGYRCC 1 cut(s) 531
BsiEI CGRYCG 2 cut(s) 328, 501
BsiHKAI GWGCWC 1 cut(s) 733
BsiSI CCGG 7 cut(s) 153, 328, 369, 489, 600, 611, 770
BslFI GGGAC 2 cut(s) 203, 670
BslI CCNNNNNNNGG 5 cut(s) 350, 394, 612, 672, 712
BsmFI GGGAC 2 cut(s) 203, 670
BsnI GGCC 5 cut(s) 152, 170, 354, 368, 599
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 432, 733
Bsp143I GATC 1 cut(s) 498
BspACI CCGC 6 cut(s) 121, 313, 316, 322, 385, 760
BspANI GGCC 5 cut(s) 152, 170, 354, 368, 599
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 6 cut(s) 493, 533, 565, 598, 604, 752
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 531
BsrBI CCGCTC 1 cut(s) 123
BsrFI RCCGGY 2 cut(s) 152, 368
BssAI RCCGGY 2 cut(s) 152, 368
BssECI CCNNGG 3 cut(s) 611, 641, 746
BssMI GATC 1 cut(s) 498
BssNI GRCGYC 3 cut(s) 162, 294, 483
Bst2UI CCWGG 4 cut(s) 395, 642, 738, 747
Bst4CI ACNGT 2 cut(s) 130, 229
Bst6I CTCTTC 1 cut(s) 738
BstACI GRCGYC 3 cut(s) 162, 294, 483
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 154, 370, 455
BstDEI CTNAG 3 cut(s) 660, 774, 798
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 501
BstMBI GATC 1 cut(s) 498
BstMCI CGRYCG 2 cut(s) 328, 501
BstMWI GCNNNNNNNGC 3 cut(s) 189, 315, 321
BstNI CCWGG 4 cut(s) 395, 642, 738, 747
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 5 cut(s) 393, 610, 640, 736, 745
BstUI CGCG 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 398
BsuRI GGCC 5 cut(s) 152, 170, 354, 368, 599
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 3 cut(s) 154, 370, 455
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 2 cut(s) 152, 368
Cfr13I GGNCC 4 cut(s) 352, 564, 597, 703
CseI GACGC 2 cut(s) 151, 302
CviAII CATG 5 cut(s) 136, 145, 166, 184, 560
DdeI CTNAG 3 cut(s) 660, 774, 798
DpnI GATC 1 cut(s) 500
DpnII GATC 1 cut(s) 498
DrdI GACNNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
EciI GGCGGA 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 564, 703
Eco57I CTGAAG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 703
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 4 cut(s) 393, 640, 736, 745
EcoT38I GRGCYC 1 cut(s) 432
FaeI CATG 5 cut(s) 139, 148, 169, 187, 563
FaiI YATR 6 cut(s) 137, 146, 167, 185, 561, 719
FaqI GGGAC 2 cut(s) 203, 670
FatI CATG 5 cut(s) 135, 144, 165, 183, 559
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 316
GlaI GCGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 5 cut(s) 152, 170, 354, 368, 599
HapII CCGG 7 cut(s) 153, 328, 369, 489, 600, 611, 770
HgaI GACGC 2 cut(s) 151, 302
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 3 cut(s) 162, 294, 483
Hin1II CATG 5 cut(s) 139, 148, 169, 187, 563
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 2 cut(s) 556, 571
HpaII CCGG 7 cut(s) 153, 328, 369, 489, 600, 611, 770
HphI GGTGA 8 cut(s) 64, 82, 91, 124, 217, 250, 328, 482
Hpy166II GTNNAC 2 cut(s) 481, 622
Hpy188I TCNGA 1 cut(s) 503
Hpy188III TCNNGA 4 cut(s) 410, 541, 682, 691
Hpy8I GTNNAC 2 cut(s) 481, 622
Hpy99I CGWCG 7 cut(s) 233, 236, 287, 296, 482, 485, 488
HpyAV CCTTC 6 cut(s) 20, 41, 76, 239, 413, 764
HpyCH4III ACNGT 2 cut(s) 130, 229
HpyCH4IV ACGT 2 cut(s) 414, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 315, 321
HpyF3I CTNAG 3 cut(s) 660, 774, 798
HpySE526I ACGT 2 cut(s) 414, 483
Hsp92I GRCGYC 3 cut(s) 162, 294, 483
Hsp92II CATG 5 cut(s) 139, 148, 169, 187, 563
HspAI GCGC 1 cut(s) 372
KroI GCCGGC 2 cut(s) 152, 368
KroNI GCCGGC 2 cut(s) 154, 370
Kzo9I GATC 1 cut(s) 498
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 128
LweI GCATC 3 cut(s) 165, 327, 627
MaeII ACGT 2 cut(s) 414, 483
MaeIII GTNAC 5 cut(s) 130, 223, 256, 470, 572
MalI GATC 1 cut(s) 500
MbiI CCGCTC 1 cut(s) 123
MboI GATC 1 cut(s) 498
MboII GAAGA 5 cut(s) 187, 398, 643, 646, 725
MhlI GDGCHC 2 cut(s) 432, 733
MlsI TGGCCA 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 2 cut(s) 550, 580
Mox20I TGGCCA 1 cut(s) 170
MroNI GCCGGC 2 cut(s) 152, 368
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 525, 723, 805
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 7 cut(s) 153, 328, 369, 489, 600, 611, 770
MspR9I CCNGG 5 cut(s) 395, 612, 642, 738, 747
MvaI CCWGG 4 cut(s) 395, 642, 738, 747
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 189, 315, 321
NaeI GCCGGC 2 cut(s) 154, 370
NciI CCSGG 1 cut(s) 612
NdeII GATC 1 cut(s) 498
NgoMIV GCCGGC 2 cut(s) 152, 368
NlaIII CATG 5 cut(s) 139, 148, 169, 187, 563
NlaIV GGNNCC 6 cut(s) 493, 533, 565, 598, 604, 752
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 5 cut(s) 130, 223, 256, 470, 572
NspV TTCGAA 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdiI GCCGGC 2 cut(s) 154, 370
PflFI GACNNNGTC 2 cut(s) 296, 476
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 1 cut(s) 317
Ple19I CGATCG 1 cut(s) 501
PleI GAGTC 2 cut(s) 550, 579
PpsI GAGTC 2 cut(s) 550, 579
PpuMI RGGWCCY 1 cut(s) 703
PshBI ATTAAT 1 cut(s) 723
Psp5II RGGWCCY 1 cut(s) 703
Psp6I CCWGG 4 cut(s) 393, 640, 736, 745
PspEI GGTNACC 1 cut(s) 470
PspGI CCWGG 4 cut(s) 393, 640, 736, 745
PspN4I GGNNCC 6 cut(s) 493, 533, 565, 598, 604, 752
PspPI GGNCC 4 cut(s) 352, 564, 597, 703
PspPPI RGGWCCY 1 cut(s) 703
PsyI GACNNNGTC 2 cut(s) 296, 476
PvuI CGATCG 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 137
SalI GTCGAC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 525, 723, 805
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 498
Sau96I GGNCC 4 cut(s) 352, 564, 597, 703
SchI GAGTC 2 cut(s) 550, 580
ScrFI CCNGG 5 cut(s) 395, 612, 642, 738, 747
SduI GDGCHC 2 cut(s) 432, 733
SfaNI GCATC 3 cut(s) 165, 327, 627
SfuI TTCGAA 1 cut(s) 198
SgrDI CGTCGACG 1 cut(s) 479
SinI GGWCC 2 cut(s) 564, 703
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SsiI CCGC 6 cut(s) 121, 313, 316, 322, 385, 760
StyD4I CCNGG 5 cut(s) 393, 610, 640, 736, 745
TaaI ACNGT 2 cut(s) 130, 229
TaiI ACGT 2 cut(s) 417, 486
TaqI TCGA 3 cut(s) 198, 480, 590
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 3 cut(s) 525, 723, 805
Tru9I TTAA 3 cut(s) 525, 723, 805
TseFI GTSAC 5 cut(s) 130, 223, 256, 470, 572
Tsp45I GTSAC 5 cut(s) 130, 223, 256, 470, 572
Tth111I GACNNNGTC 2 cut(s) 296, 476
VpaK11BI GGWCC 2 cut(s) 564, 703
VspI ATTAAT 1 cut(s) 723
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 346
XmiI GTMKAC 1 cut(s) 480
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.