Prupe.2G107400_v2.0.a1

Belongs to the universal ribosomal protein uL3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015186
Physical Location & Seq
Reverse (-)
16486750 .. 16487617
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G107400.1

Sequence Viewer

Length: 831 bp
ATGTCAATCCTTTCAGCTTCATCTTCTTCTTCCCTTCTTCCCAATGTCTCATTCTCCTCCTCAAAATGCTGCTCTTCATTTCTCACCCCACCAACCCAGACCAACAGCAACCCATTTCTGCCCATTGTGAAATCCAAGAAGAAGAAACCAGTGGGCGTGACCATGAGCGTGGAGGCAGGCATAGGAGTTATGGCCACGAAGCTCGGCATGATGAGCTTCTTCGAACCCAACGGCAAAGTTGTCCCAGTCACAGTGGTGGGTTTCAAAGAAGGCAACATAGTGACCCAGGTCAAAACCGAGGCCACCGACGGATACGATGCCGTTCAGGTGGGCTACCGCCGAGTCAGGGACCGGAAACTGACGAAACCCGAAATGGGTCATCTCCAGAAGGCCGGTTCAATCCCCCTGCGCCATCTCCAGGAGTTTCGGCTCCAGAGCGTTGATGGGTTCGAGCCAAACCAGAAGCTTTCGTTCGACGAGCTCTTCAACGAAGGAGACATTGTTGATGTCTCTGGAACCACAATCGGGAAAGGGTTTCAGGGTGGGATTAAGAGGCACAATTTCAAGAGAGGGCAAATGACTCATGGGTCCAAAAGTCACAGAGCTCTTGGGTCAATTGGGGCCGGAACGACGCCAGGGCGGGTTTACAAGGGGAAGAAGATGCCTGGAAGAATGGGAGGGACCAAGACCAAGATCAGGAAGCTCAAGATTGTGAAGATTGATAAGGACCTCAATGTTGTTATGATCAAAGGTGCTCTTCCTGGTAAGCCTGGCAATCTTCTTCGCATAGCTCCAGCTAAGATTGTGGGCAAGAACATTCCTAAGAGTTAA

Protein Analysis

277

Amino Acids

29.71

Weight (kDa)

10.33

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43030
fragaria_vesca FvH4_7g08200
malus_domestica MD02G1230700.v1.1 MD07G1082200.v1.1
prunus_persica Prupe.2G107400_v2.0.a1
pyrus_communis pycom02g19980 pycom07g06550
rosa_chinensis RchiOBHm_Chr1g0340951
rosa_laevigata RLG00000029053
rosa_multiflora Rmu_sc0002200.1_g000047
rosa_roxburghii Rroxscaffold_4G00311600
rosa_rugosa Rorug01G0160600.1
rosa_samantha Rh1AG175300 Rh1BG143600 Rh1DG175200
rosa_wichuraiana Rw1G014690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AciI CCGC 2 cut(s) 337, 640
AcoI YGGCCR 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 632
AfiI CCNNNNNNNGG 5 cut(s) 346, 374, 418, 525, 696
AgsI TTSAA 4 cut(s) 265, 399, 487, 565
AjnI CCWGG 6 cut(s) 285, 417, 634, 664, 760, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 9 cut(s) 17, 202, 216, 466, 481, 605, 703, 791, 797
AluI AGCT 9 cut(s) 17, 202, 216, 466, 481, 605, 703, 791, 797
Alw21I GWGCWC 3 cut(s) 483, 607, 757
Alw26I GTCTC 3 cut(s) 52, 489, 514
AoxI GGCC 4 cut(s) 192, 300, 390, 621
ApeKI GCWGC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 5 cut(s) 349, 588, 621, 681, 727
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 4 cut(s) 349, 588, 681, 727
BalI TGGCCA 1 cut(s) 194
BanII GRGCYC 2 cut(s) 483, 607
Bbv12I GWGCWC 3 cut(s) 483, 607, 757
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 420, 437
BceAI ACGGC 2 cut(s) 247, 305
BciT130I CCWGG 6 cut(s) 287, 419, 636, 666, 762, 771
BciVI GTATCC 1 cut(s) 305
BclI TGATCA 1 cut(s) 744
BcoDI GTCTC 3 cut(s) 52, 489, 514
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 6 cut(s) 287, 419, 636, 666, 762, 771
Bme18I GGWCC 4 cut(s) 349, 588, 681, 727
BmgT120I GGNCC 5 cut(s) 349, 588, 621, 681, 727
BmiI GGNNCC 6 cut(s) 350, 431, 517, 589, 622, 682
BmrFI CCNGG 6 cut(s) 287, 419, 636, 666, 762, 771
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 307, 651
BmuI ACTGGG 1 cut(s) 239
BoxI GACNNNNGTC 1 cut(s) 287
BpmI CTGGAG 4 cut(s) 368, 401, 416, 777
Bpu14I TTCGAA 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 285, 297, 635
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 5 cut(s) 346, 374, 418, 525, 696
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 149, 245
BseBI CCWGG 6 cut(s) 287, 419, 636, 666, 762, 771
BseDI CCNNGG 3 cut(s) 285, 297, 635
BseLI CCNNNNNNNGG 5 cut(s) 346, 374, 418, 525, 696
BseNI ACTGG 2 cut(s) 149, 245
BseRI GAGGAG 2 cut(s) 46, 49
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 4 cut(s) 194, 302, 392, 623
BsiHKAI GWGCWC 3 cut(s) 483, 607, 757
BsiSI CCGG 3 cut(s) 352, 393, 624
BslFI GGGAC 3 cut(s) 227, 362, 694
BslI CCNNNNNNNGG 5 cut(s) 346, 374, 418, 525, 696
BsmAI GTCTC 3 cut(s) 52, 489, 514
BsmFI GGGAC 3 cut(s) 227, 362, 694
BsnI GGCC 4 cut(s) 194, 302, 392, 623
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 3 cut(s) 483, 607, 757
Bsp143I GATC 2 cut(s) 693, 744
BspACI CCGC 2 cut(s) 337, 640
BspANI GGCC 4 cut(s) 194, 302, 392, 623
BspLI GGNNCC 6 cut(s) 350, 431, 517, 589, 622, 682
BspQI GCTCTTC 3 cut(s) 79, 488, 762
BspT104I TTCGAA 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 149, 245
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 3 cut(s) 285, 297, 635
BssMI GATC 2 cut(s) 693, 744
BssNI GRCGYC 1 cut(s) 632
Bst2UI CCWGG 6 cut(s) 287, 419, 636, 666, 762, 771
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 3 cut(s) 79, 488, 762
BstACI GRCGYC 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 798, 822
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 2 cut(s) 696, 747
BstMAI GTCTC 3 cut(s) 52, 489, 514
BstMBI GATC 2 cut(s) 693, 744
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 6 cut(s) 287, 419, 636, 666, 762, 771
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 6 cut(s) 285, 417, 634, 664, 760, 769
BstV1I GCAGC 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 169
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 4 cut(s) 194, 302, 392, 623
BtsIMutI CAGTG 2 cut(s) 156, 258
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 5 cut(s) 349, 588, 621, 681, 727
CseI GACGC 1 cut(s) 640
CviAII CATG 3 cut(s) 163, 208, 584
DdeI CTNAG 2 cut(s) 798, 822
DpnI GATC 2 cut(s) 695, 746
DpnII GATC 2 cut(s) 693, 744
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 3 cut(s) 79, 488, 762
EarI CTCTTC 3 cut(s) 79, 488, 762
Ecl136II GAGCTC 2 cut(s) 481, 605
Eco24I GRGCYC 2 cut(s) 483, 607
Eco47I GGWCC 4 cut(s) 349, 588, 681, 727
Eco53kI GAGCTC 2 cut(s) 481, 605
EcoICRI GAGCTC 2 cut(s) 481, 605
EcoO109I RGGNCCY 1 cut(s) 727
EcoRII CCWGG 6 cut(s) 285, 417, 634, 664, 760, 769
EcoT38I GRGCYC 2 cut(s) 483, 607
FaeI CATG 3 cut(s) 166, 211, 587
FaiI YATR 8 cut(s) 164, 182, 191, 209, 278, 585, 743, 788
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 3 cut(s) 227, 362, 694
FatI CATG 3 cut(s) 162, 207, 583
FauI CCCGC 1 cut(s) 633
FbaI TGATCA 1 cut(s) 744
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 2 cut(s) 483, 607
Fsp4HI GCNGC 1 cut(s) 70
GlaI GCGC 1 cut(s) 410
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 4 cut(s) 368, 401, 416, 777
HaeIII GGCC 4 cut(s) 194, 302, 392, 623
HapII CCGG 3 cut(s) 352, 393, 624
HgaI GACGC 1 cut(s) 640
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 3 cut(s) 166, 211, 587
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 2 cut(s) 342, 580
HpaII CCGG 3 cut(s) 352, 393, 624
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 646
Hpy188III TCNNGA 7 cut(s) 385, 433, 513, 526, 565, 697, 706
Hpy8I GTNNAC 1 cut(s) 646
Hpy99I CGWCG 3 cut(s) 311, 479, 634
HpyAV CCTTC 4 cut(s) 44, 263, 382, 485
HpyCH4III ACNGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 798, 822
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 3 cut(s) 166, 211, 587
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 744
Kzo9I GATC 2 cut(s) 693, 744
LguI GCTCTTC 3 cut(s) 79, 488, 762
LmnI GCTCC 2 cut(s) 435, 796
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 2 cut(s) 307, 651
MaeIII GTNAC 4 cut(s) 157, 247, 280, 596
MalI GATC 2 cut(s) 695, 746
MboI GATC 2 cut(s) 693, 744
MfeI CAATTG 1 cut(s) 615
MhlI GDGCHC 3 cut(s) 483, 607, 757
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 2 cut(s) 559, 615
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 2 cut(s) 351, 574
MnlI CCTC 8 cut(s) 67, 70, 166, 292, 546, 563, 671, 740
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MseI TTAA 2 cut(s) 549, 829
MslI CAYNNNNRTG 2 cut(s) 167, 254
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 3 cut(s) 352, 393, 624
MspR9I CCNGG 6 cut(s) 287, 419, 636, 666, 762, 771
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 6 cut(s) 287, 419, 636, 666, 762, 771
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 2 cut(s) 693, 744
NlaIII CATG 3 cut(s) 166, 211, 587
NlaIV GGNNCC 6 cut(s) 350, 431, 517, 589, 622, 682
NmeAIII GCCGAG 2 cut(s) 183, 365
NmuCI GTSAC 4 cut(s) 157, 247, 280, 596
NspV TTCGAA 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 254
PciSI GCTCTTC 3 cut(s) 79, 488, 762
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 350, 574
PpsI GAGTC 2 cut(s) 350, 574
PpuMI RGGWCCY 1 cut(s) 727
PshAI GACNNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 2 cut(s) 483, 607
Psp5II RGGWCCY 1 cut(s) 727
Psp6I CCWGG 6 cut(s) 285, 417, 634, 664, 760, 769
PspGI CCWGG 6 cut(s) 285, 417, 634, 664, 760, 769
PspN4I GGNNCC 6 cut(s) 350, 431, 517, 589, 622, 682
PspPI GGNCC 5 cut(s) 349, 588, 621, 681, 727
PspPPI RGGWCCY 1 cut(s) 727
RseI CAYNNNNRTG 2 cut(s) 167, 254
SacI GAGCTC 2 cut(s) 483, 607
SapI GCTCTTC 3 cut(s) 79, 488, 762
SaqAI TTAA 2 cut(s) 549, 829
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 2 cut(s) 693, 744
Sau96I GGNCC 5 cut(s) 349, 588, 621, 681, 727
SchI GAGTC 2 cut(s) 351, 574
ScrFI CCNGG 6 cut(s) 287, 419, 636, 666, 762, 771
SduI GDGCHC 3 cut(s) 483, 607, 757
SfaNI GCATC 2 cut(s) 307, 651
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 4 cut(s) 349, 588, 681, 727
SmiMI CAYNNNNRTG 2 cut(s) 167, 254
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
Sse9I AATT 2 cut(s) 559, 615
SsiI CCGC 2 cut(s) 337, 640
SstI GAGCTC 2 cut(s) 483, 607
StyD4I CCNGG 6 cut(s) 285, 417, 634, 664, 760, 769
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 222, 450, 474
TasI AATT 2 cut(s) 559, 615
Tru1I TTAA 2 cut(s) 549, 829
Tru9I TTAA 2 cut(s) 549, 829
TscAI CASTG 2 cut(s) 156, 258
TseFI GTSAC 4 cut(s) 157, 247, 280, 596
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 4 cut(s) 157, 247, 280, 596
TspDTI ATGAA 2 cut(s) 9, 66
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 156, 258
VpaK11BI GGWCC 4 cut(s) 349, 588, 681, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.