pycom02g19980

Belongs to the universal ribosomal protein uL3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015186
Physical Location & Seq
Forward (+)
18103573 .. 18104340
768 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19980.1

Sequence Viewer

Length: 768 bp
ATGTCAATCCTTTCCATTTCATCACCTTCTTCTTCCTCCGCTCTCTTCCCCAATGTCTCCTTCTCCTCCAAATCCTCCTCATTCCTCACCCCGCCGCTCCAAATAGCCACCCCATCGCTCGCCGTCGCAAAAAACCATAAAAACCAACTGACGGGAATAACCATGAGTATGGAGGCCGGCATTGGAGTTATGGCCACGAAGCTCGGCATGATGAGCTTCTTCGAACCCACCGGCAAAGTCGTCCCGGTCACCGTCGTGGGTTTCAAAGAGGGCAACATCGTCACCCAGGTCAAAACCCAGGCCACCGACGGCTACGACGCCGTCCAAATCGGGTACCGGCGGGTCCGTGACCGGAAGCTAACGAAGCCCGAAATAGGTCACCTCCAGAAGGCCGGCTCGATCCCCCTCCGCCACCTCCAGGAGTTCCGGCTTCAAGACGTCCAAGGGTTCGAGCCGAACCAGAAGCTCTTGTTCGATGAGCTTTTCAACGAGGGCGACATTGTCGACGTCTCTGGAACCACAATCGGAAAGGGGTTTCAGGGAGGAATCAAGCGGCACAATTTCAAGCGGGGGCAGATGACCCACGGGTCCAAGAGCCACAGAGCTCTCGGGTCTATCGGTGCCGGAACCACGCCGGGGCGGGTTTACAAGGGGAAGAAGATGCCCGGAAGAATGGGAGGAACCAAGACCAAGATTAGGAAGCTGAAGATTGTGAAGATCGATAAGGAGCTCAATGTTGTGATCGATCAAAGGCGCTCTGCCTGGTAA

Protein Analysis

256

Amino Acids

27.78

Weight (kDa)

10.35

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 155 - 242 3.7e-15 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43030
fragaria_vesca FvH4_7g08200
malus_domestica MD02G1230700.v1.1 MD07G1082200.v1.1
prunus_persica Prupe.2G107400_v2.0.a1
pyrus_communis pycom02g19980 pycom07g06550
rosa_chinensis RchiOBHm_Chr1g0340951
rosa_laevigata RLG00000029053
rosa_multiflora Rmu_sc0002200.1_g000047
rosa_roxburghii Rroxscaffold_4G00311600
rosa_rugosa Rorug01G0160600.1
rosa_samantha Rh1AG175300 Rh1BG143600 Rh1DG175200
rosa_wichuraiana Rw1G014690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AatII GACGTC 2 cut(s) 441, 510
Acc65I GGTACC 1 cut(s) 333
AccB1I GGYRCC 2 cut(s) 333, 620
AccBSI CCGCTC 2 cut(s) 41, 97
AccI GTMKAC 1 cut(s) 504
AciI CCGC 8 cut(s) 39, 92, 95, 340, 409, 553, 568, 640
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 725
AcyI GRCGYC 3 cut(s) 318, 438, 507
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 151, 374, 388, 418, 636, 696
AgsI TTSAA 4 cut(s) 265, 434, 487, 565
AjnI CCWGG 4 cut(s) 285, 297, 417, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 8 cut(s) 202, 216, 358, 466, 481, 605, 703, 730
AluI AGCT 8 cut(s) 202, 216, 358, 466, 481, 605, 703, 730
Alw21I GWGCWC 2 cut(s) 607, 732
Alw26I GTCTC 2 cut(s) 61, 514
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 4 cut(s) 174, 192, 300, 390
Asp718I GGTACC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 756
AspS9I GGNCC 2 cut(s) 343, 588
AsuC2I CCSGG 3 cut(s) 245, 636, 666
AsuHPI GGTGA 5 cut(s) 15, 79, 241, 274, 371
AsuII TTCGAA 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 2 cut(s) 343, 588
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 2 cut(s) 333, 620
BanII GRGCYC 2 cut(s) 607, 732
Bbv12I GWGCWC 2 cut(s) 607, 732
BccI CCATC 1 cut(s) 121
BceAI ACGGC 3 cut(s) 107, 305, 325
BciT130I CCWGG 4 cut(s) 287, 299, 419, 763
BcnI CCSGG 3 cut(s) 245, 636, 666
BcoDI GTCTC 2 cut(s) 61, 514
BfoI RGCGCY 1 cut(s) 757
BisI GCNGC 2 cut(s) 95, 554
BlsI GCNGC 2 cut(s) 96, 555
Bme1390I CCNGG 7 cut(s) 245, 287, 299, 419, 636, 666, 763
Bme18I GGWCC 2 cut(s) 343, 588
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 2 cut(s) 343, 588
BmiI GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
BmrFI CCNGG 7 cut(s) 245, 287, 299, 419, 636, 666, 763
BmsI GCATC 1 cut(s) 651
BpmI CTGGAG 2 cut(s) 368, 401
Bpu14I TTCGAA 1 cut(s) 222
BpuMI CCSGG 3 cut(s) 245, 636, 666
Bsa29I ATCGAT 2 cut(s) 720, 744
BsaHI GRCGYC 3 cut(s) 318, 438, 507
BsaJI CCNNGG 5 cut(s) 285, 297, 442, 583, 635
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 374, 388, 418, 636, 696
Bse118I RCCGGY 4 cut(s) 176, 230, 336, 392
BseBI CCWGG 4 cut(s) 287, 299, 419, 763
BseCI ATCGAT 2 cut(s) 720, 744
BseDI CCNNGG 5 cut(s) 285, 297, 442, 583, 635
BseLI CCNNNNNNNGG 6 cut(s) 151, 374, 388, 418, 636, 696
BseRI GAGGAG 2 cut(s) 55, 67
BshFI GGCC 4 cut(s) 176, 194, 302, 392
BshNI GGYRCC 2 cut(s) 333, 620
BshVI ATCGAT 2 cut(s) 720, 744
BsiHKAI GWGCWC 2 cut(s) 607, 732
BsiHKCI CYCGRG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 6 cut(s) 151, 374, 388, 418, 636, 696
BsmAI GTCTC 2 cut(s) 61, 514
BsmBI CGTCTC 1 cut(s) 514
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 4 cut(s) 176, 194, 302, 392
BsoBI CYCGRG 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 607, 732
Bsp143I GATC 4 cut(s) 399, 717, 741, 745
BspACI CCGC 8 cut(s) 39, 92, 95, 340, 409, 553, 568, 640
BspANI GGCC 4 cut(s) 176, 194, 302, 392
BspDI ATCGAT 2 cut(s) 720, 744
BspLI GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
BspPI GGATC 1 cut(s) 394
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 2 cut(s) 333, 620
BsrBI CCGCTC 2 cut(s) 41, 97
BsrFI RCCGGY 4 cut(s) 176, 230, 336, 392
BssAI RCCGGY 4 cut(s) 176, 230, 336, 392
BssECI CCNNGG 5 cut(s) 285, 297, 442, 583, 635
BssMI GATC 4 cut(s) 399, 717, 741, 745
BssNI GRCGYC 3 cut(s) 318, 438, 507
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 4 cut(s) 287, 299, 419, 763
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 3 cut(s) 318, 438, 507
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 120, 178, 394
BstDSI CCRYGG 1 cut(s) 583
BstEII GGTNACC 2 cut(s) 247, 377
BstENI CCTNNNNNAGG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 757
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 4 cut(s) 402, 720, 744, 748
BstMAI GTCTC 2 cut(s) 61, 514
BstMBI GATC 4 cut(s) 399, 717, 741, 745
BstMWI GCNNNNNNNGC 2 cut(s) 213, 364
BstNI CCWGG 4 cut(s) 287, 299, 419, 763
BstPI GGTNACC 2 cut(s) 247, 377
BstSCI CCNGG 7 cut(s) 243, 285, 297, 417, 634, 664, 761
BstXI CCANNNNNNTGG 1 cut(s) 169
Bsu15I ATCGAT 2 cut(s) 720, 744
BsuRI GGCC 4 cut(s) 176, 194, 302, 392
BsuTUI ATCGAT 2 cut(s) 720, 744
BtgI CCRYGG 1 cut(s) 583
BtgZI GCGATG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 120, 178, 394
CfoI GCGC 1 cut(s) 756
Cfr10I RCCGGY 4 cut(s) 176, 230, 336, 392
Cfr13I GGNCC 2 cut(s) 343, 588
ClaI ATCGAT 2 cut(s) 720, 744
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 334
CviAII CATG 2 cut(s) 163, 208
CviQI GTAC 1 cut(s) 334
DpnI GATC 4 cut(s) 401, 719, 743, 747
DpnII GATC 4 cut(s) 399, 717, 741, 745
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 398
Ecl136II GAGCTC 2 cut(s) 605, 730
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 2 cut(s) 607, 732
Eco47I GGWCC 2 cut(s) 343, 588
Eco53kI GAGCTC 2 cut(s) 605, 730
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 608
Eco91I GGTNACC 2 cut(s) 247, 377
EcoICRI GAGCTC 2 cut(s) 605, 730
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO65I GGTNACC 2 cut(s) 247, 377
EcoRII CCWGG 4 cut(s) 285, 297, 417, 761
EcoT14I CCWWGG 1 cut(s) 442
EcoT38I GRGCYC 2 cut(s) 607, 732
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 2 cut(s) 166, 211
FaiI YATR 5 cut(s) 138, 164, 170, 191, 209
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 162, 207
FauI CCCGC 4 cut(s) 99, 333, 561, 633
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 95, 554
FriOI GRGCYC 2 cut(s) 607, 732
Fsp4HI GCNGC 2 cut(s) 95, 554
GlaI GCGC 1 cut(s) 755
GluI GCNGC 2 cut(s) 95, 554
GsuI CTGGAG 2 cut(s) 368, 401
HaeII RGCGCY 1 cut(s) 757
HaeIII GGCC 4 cut(s) 176, 194, 302, 392
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 756
Hin1I GRCGYC 3 cut(s) 318, 438, 507
Hin1II CATG 2 cut(s) 166, 211
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 1 cut(s) 546
HphI GGTGA 5 cut(s) 15, 79, 241, 274, 371
Hpy166II GTNNAC 2 cut(s) 505, 646
Hpy188I TCNGA 1 cut(s) 527
Hpy188III TCNNGA 3 cut(s) 385, 434, 513
Hpy8I GTNNAC 2 cut(s) 505, 646
Hpy99I CGWCG 5 cut(s) 128, 257, 311, 320, 509
HpyAV CCTTC 3 cut(s) 36, 70, 382
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 438, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 364
HpySE526I ACGT 2 cut(s) 438, 507
Hsp92I GRCGYC 3 cut(s) 318, 438, 507
Hsp92II CATG 2 cut(s) 166, 211
HspAI GCGC 1 cut(s) 754
KpnI GGTACC 1 cut(s) 337
KroI GCCGGC 2 cut(s) 176, 392
KroNI GCCGGC 2 cut(s) 178, 394
Kzo9I GATC 4 cut(s) 399, 717, 741, 745
LmnI GCTCC 2 cut(s) 102, 727
LweI GCATC 1 cut(s) 651
MaeII ACGT 2 cut(s) 438, 507
MaeIII GTNAC 4 cut(s) 247, 280, 347, 377
MalI GATC 4 cut(s) 401, 719, 743, 747
MbiI CCGCTC 2 cut(s) 41, 97
MboI GATC 4 cut(s) 399, 717, 741, 745
MboII GAAGA 9 cut(s) 21, 24, 37, 211, 667, 670, 681, 718, 727
MhlI GDGCHC 2 cut(s) 607, 732
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 1 cut(s) 559
MluNI TGGCCA 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 194
MroNI GCCGGC 2 cut(s) 176, 392
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 167, 254
Msp20I TGGCCA 1 cut(s) 194
MspR9I CCNGG 7 cut(s) 245, 287, 299, 419, 636, 666, 763
MvaI CCWGG 4 cut(s) 287, 299, 419, 763
MwoI GCNNNNNNNGC 2 cut(s) 213, 364
NaeI GCCGGC 2 cut(s) 178, 394
NciI CCSGG 3 cut(s) 245, 636, 666
NdeII GATC 4 cut(s) 399, 717, 741, 745
NgoMIV GCCGGC 2 cut(s) 176, 392
NlaIII CATG 2 cut(s) 166, 211
NlaIV GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
NmeAIII GCCGAG 1 cut(s) 183
NmuCI GTSAC 4 cut(s) 247, 280, 347, 377
NspV TTCGAA 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 254
PdiI GCCGGC 2 cut(s) 178, 394
PfeI GAWTC 1 cut(s) 546
PflFI GACNNNGTC 2 cut(s) 320, 500
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 2 cut(s) 96, 555
Psp124BI GAGCTC 2 cut(s) 607, 732
Psp6I CCWGG 4 cut(s) 285, 297, 417, 761
PspEI GGTNACC 2 cut(s) 247, 377
PspGI CCWGG 4 cut(s) 285, 297, 417, 761
PspN4I GGNNCC 7 cut(s) 335, 344, 517, 589, 622, 628, 682
PspPI GGNCC 2 cut(s) 343, 588
PsyI GACNNNGTC 2 cut(s) 320, 500
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 167, 254
SacI GAGCTC 2 cut(s) 607, 732
SalI GTCGAC 1 cut(s) 503
SatI GCNGC 2 cut(s) 95, 554
Sau3AI GATC 4 cut(s) 399, 717, 741, 745
Sau96I GGNCC 2 cut(s) 343, 588
ScrFI CCNGG 7 cut(s) 245, 287, 299, 419, 636, 666, 763
SduI GDGCHC 2 cut(s) 607, 732
SfaNI GCATC 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 2 cut(s) 343, 588
SmiMI CAYNNNNRTG 2 cut(s) 167, 254
Sse9I AATT 1 cut(s) 559
SsiI CCGC 8 cut(s) 39, 92, 95, 340, 409, 553, 568, 640
SstI GAGCTC 2 cut(s) 607, 732
StyD4I CCNGG 7 cut(s) 243, 285, 297, 417, 634, 664, 761
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 441, 510
TaqI TCGA 7 cut(s) 222, 398, 450, 474, 504, 720, 744
TasI AATT 1 cut(s) 559
TauI GCSGC 2 cut(s) 97, 556
TfiI GAWTC 1 cut(s) 546
TseFI GTSAC 4 cut(s) 247, 280, 347, 377
Tsp45I GTSAC 4 cut(s) 247, 280, 347, 377
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 335
Tth111I GACNNNGTC 2 cut(s) 320, 500
VpaK11BI GGWCC 2 cut(s) 343, 588
XagI CCTNNNNNAGG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 504
ZraI GACGTC 2 cut(s) 439, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.