FvH4_7g11310

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010300
Physical Location & Seq
Forward (+)
10530606 .. 10533391
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11310.t2

Sequence Viewer

Length: 867 bp
ATGAGCAACCTTCACTTAGACACTTCTACTTCCAAAATAATCATAGCCCTGCGAATCTCTTCCCTTTTCTTTCTCTTCTCTTCACTCAATACCATCCATGGCTATCCAATCAAAGCTCACATATTCATCTATGCGGGCTGCTCACAAGAAAAGTACCAACCGAACTCACCCTTTGAAGCTAATCTCAACTCTTTCCTAACCTCAGTTGTTAGTTCATCTTCGCAAGCCTCTTACAACGCCTTTTCTATCGGAAACGGAACCTCAACGTCACCAGAAGGTCCTATTTATGGCTTGTATCAGTGCAGAGGCGACTTAAAGATTTTTGATTGTTCGAAATGCATCGAAAGCGCAGTGAACCAAATCACTCTGATCTGTCCTTACTCTTATGGCGCATCTTTGCAGTTACAAGGTTGTTATGTCAGATTCGAGCATGTTGAGTTTCTGGGAAAGCTTGATACAAGTTTAAGGTACAAGAAATGTAGTAAGAGTGTGAATGAAGATGTTGAGTTCTTTCGGAGAAGAGATGACGTCCTAGCTGACTTGCAAGGGACTAGTGGATTTAGGGTTAGCAGTTCAGGCTTGGTCGAGGGTTTTGCGCAGTGTTTGGGGGATTTGAGCCAAAACGACTGCTCTTCTTGCGTCGCAGATGCTGTGGGAAAGCTGAAGAGTTTGTGTGGATCAGCAGCTGCTGTAGATGTGTTCTTGGCTCAGTGTTATGCTATGTACTGGGCTTCTGGCTACTATGATATCTCAGATTCCTCTAACGAAGACCAAGTGGGAAAGACAGTGGCCATTATCGTGGGGGTAATAGCAGGTCTAGCTATTCTCATTGTTCTTCTCTCAGTTTGCCGGAAAACCATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

289

Amino Acids

31.2

Weight (kDa)

5.81

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 47 - 144 9.8e-20 Salt stress response/antifungal
Stress-antifung PF01657 160 - 242 8.8e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 531
Acc16I TGCGCA 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 803
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 685
AcoI YGGCCR 1 cut(s) 789
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 3 cut(s) 155, 470, 725
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 1 cut(s) 176
AhlI ACTAGT 1 cut(s) 551
AluBI AGCT 7 cut(s) 116, 179, 451, 536, 661, 686, 821
AluI AGCT 7 cut(s) 116, 179, 451, 536, 661, 686, 821
AlwI GGATC 1 cut(s) 685
AlwNI CAGNNNCTG 3 cut(s) 650, 686, 689
AoxI GGCC 1 cut(s) 789
ApeKI GCWGC 3 cut(s) 138, 683, 686
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 3 cut(s) 350, 392, 598
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 159, 261
AsuII TTCGAA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 125, 673, 695
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 3 cut(s) 533, 552, 818
BfmI CTRYAG 1 cut(s) 690
BfuAI ACCTGC 1 cut(s) 803
BisI GCNGC 3 cut(s) 139, 684, 687
BlsI GCNGC 3 cut(s) 140, 685, 688
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 3 cut(s) 348, 401, 637
BmuI ACTGGG 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 97, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 97, 858
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 4 cut(s) 216, 722, 765, 855
BseNI ACTGG 1 cut(s) 731
BseXI GCAGC 3 cut(s) 125, 673, 695
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 1 cut(s) 791
BsiSI CCGG 1 cut(s) 850
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 332
Bsp143I GATC 2 cut(s) 369, 677
Bsp19I CCATGG 2 cut(s) 97, 858
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 4 cut(s) 215, 721, 764, 854
BspLI GGNNCC 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 803
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 1 cut(s) 637
BspT104I TTCGAA 1 cut(s) 332
BsrI ACTGG 1 cut(s) 731
BssECI CCNNGG 2 cut(s) 97, 858
BssMI GATC 2 cut(s) 369, 677
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 2 cut(s) 97, 858
Bst4CI ACNGT 1 cut(s) 787
Bst6I CTCTTC 6 cut(s) 64, 80, 85, 514, 637, 659
BstACI GRCGYC 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 136, 225
BstDEI CTNAG 5 cut(s) 16, 202, 708, 751, 841
BstDSI CCRYGG 2 cut(s) 97, 858
BstF5I GGATG 1 cut(s) 93
BstHHI GCGC 3 cut(s) 350, 392, 598
BstKTI GATC 2 cut(s) 372, 680
BstMBI GATC 2 cut(s) 369, 677
BstMWI GCNNNNNNNGC 4 cut(s) 345, 576, 636, 818
BstNSI RCATGY 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 3 cut(s) 125, 673, 695
BstV2I GAAGAC 1 cut(s) 774
BstXI CCANNNNNNTGG 1 cut(s) 799
BsuRI GGCC 1 cut(s) 791
BtgI CCRYGG 2 cut(s) 97, 858
BtsCI GGATG 1 cut(s) 93
BtsI GCAGTG 2 cut(s) 357, 605
BtsIMutI CAGTG 5 cut(s) 305, 357, 605, 716, 792
BveI ACCTGC 1 cut(s) 803
Cac8I GCNNGC 2 cut(s) 136, 225
CaiI CAGNNNCTG 3 cut(s) 650, 686, 689
CfoI GCGC 3 cut(s) 350, 392, 598
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 628
Csp6I GTAC 3 cut(s) 154, 469, 724
CviAII CATG 3 cut(s) 98, 431, 859
CviQI GTAC 3 cut(s) 154, 469, 724
DdeI CTNAG 5 cut(s) 16, 202, 708, 751, 841
DpnI GATC 2 cut(s) 371, 679
DpnII GATC 2 cut(s) 369, 677
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 6 cut(s) 64, 80, 85, 514, 637, 659
EarI CTCTTC 6 cut(s) 64, 80, 85, 514, 637, 659
Eco130I CCWWGG 2 cut(s) 97, 858
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 683
EcoO109I RGGNCCY 1 cut(s) 278
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 97, 858
EcoT22I ATGCAT 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 97, 858
FaeI CATG 3 cut(s) 101, 434, 862
FaqI GGGAC 1 cut(s) 562
FatI CATG 3 cut(s) 97, 430, 858
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 139, 684, 687
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 139, 684, 687
FspBI CTAG 3 cut(s) 533, 552, 818
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 3 cut(s) 349, 391, 597
GluI GCNGC 3 cut(s) 139, 684, 687
HaeIII GGCC 1 cut(s) 791
HapII CCGG 1 cut(s) 850
HgaI GACGC 1 cut(s) 628
HhaI GCGC 3 cut(s) 350, 392, 598
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 3 cut(s) 101, 434, 862
Hin6I GCGC 3 cut(s) 348, 390, 596
HinP1I GCGC 3 cut(s) 348, 390, 596
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 54, 423, 755
HpaII CCGG 1 cut(s) 850
HphI GGTGA 2 cut(s) 159, 261
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 5 cut(s) 251, 369, 422, 516, 754
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 2 cut(s) 20, 269
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 2 cut(s) 266, 528
HpyCH4V TGCA 4 cut(s) 303, 339, 400, 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 576, 636, 818
HpyF3I CTNAG 5 cut(s) 16, 202, 708, 751, 841
HpySE526I ACGT 2 cut(s) 266, 528
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 3 cut(s) 101, 434, 862
HspAI GCGC 3 cut(s) 348, 390, 596
Kzo9I GATC 2 cut(s) 369, 677
LguI GCTCTTC 1 cut(s) 637
LpnPI CCDG 8 cut(s) 62, 285, 428, 561, 712, 720, 798, 863
Lsp1109I GCAGC 3 cut(s) 125, 673, 695
LweI GCATC 3 cut(s) 348, 401, 637
MaeI CTAG 3 cut(s) 533, 552, 818
MaeII ACGT 2 cut(s) 266, 528
MaeIII GTNAC 2 cut(s) 267, 402
MalI GATC 2 cut(s) 371, 679
MboI GATC 2 cut(s) 369, 677
MlsI TGGCCA 1 cut(s) 791
MluNI TGGCCA 1 cut(s) 791
MnlI CCTC 6 cut(s) 211, 238, 271, 299, 580, 769
Mox20I TGGCCA 1 cut(s) 791
Mph1103I ATGCAT 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 1 cut(s) 791
MseI TTAA 2 cut(s) 314, 464
MslI CAYNNNNRTG 1 cut(s) 797
Msp20I TGGCCA 1 cut(s) 791
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 850
MwoI GCNNNNNNNGC 4 cut(s) 345, 576, 636, 818
NcoI CCATGG 2 cut(s) 97, 858
NdeII GATC 2 cut(s) 369, 677
NlaIII CATG 3 cut(s) 101, 434, 862
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 267
NsbI TGCGCA 1 cut(s) 597
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 54, 423, 755
PkrI GCNGC 3 cut(s) 140, 685, 688
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PstNI CAGNNNCTG 3 cut(s) 650, 686, 689
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 3 cut(s) 155, 470, 725
RsaNI GTAC 3 cut(s) 154, 469, 724
RseI CAYNNNNRTG 1 cut(s) 797
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 314, 464
SatI GCNGC 3 cut(s) 139, 684, 687
Sau3AI GATC 2 cut(s) 369, 677
Sau96I GGNCC 1 cut(s) 278
SfaNI GCATC 3 cut(s) 348, 401, 637
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 332
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 797
SpeI ACTAGT 1 cut(s) 551
SsiI CCGC 1 cut(s) 134
SspMI CTAG 3 cut(s) 533, 552, 818
StyI CCWWGG 2 cut(s) 97, 858
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 2 cut(s) 269, 531
TaqI TCGA 4 cut(s) 332, 342, 426, 585
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 3 cut(s) 54, 423, 755
Tru1I TTAA 2 cut(s) 314, 464
Tru9I TTAA 2 cut(s) 314, 464
TscAI CASTG 5 cut(s) 305, 357, 605, 716, 792
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 3 cut(s) 138, 683, 686
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 115, 204, 510
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 5 cut(s) 305, 357, 605, 716, 792
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 3 cut(s) 533, 552, 818
ZraI GACGTC 1 cut(s) 529
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.