MD07G1117900.v1.1

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010300
Physical Location & Seq
Forward (+)
14474258 .. 14476913
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1117900.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGTCATGAACAACCTTCACTTACACTACTCTACACAGAAAACAATCTTAGCCCAGAGAATAATAACCTCCTCTATTTTCTTTCTCTTTTCTACTCTAATCACTATCCATGGCTACCCAATCAAATCCCGCATCTTCATCTATGCAGGCTGCTCCCAAGAAAAATACCAACCAAACTCACCCTTTGAAGCCAACCTCAACTCTTTTCTATCATCAGTCGTCAGCTCATCCTCTCAAGTCTCTTACAACAATTTTGCAGTCGGAAATGGAAGCTCAACACCAGAAGGATCCATCTACGGTTTGTACCAGTGCCGAGGTGACTTAAAGATTTTCGACTGCTCAAAATGCATCGTAAGCGCAGTGAATCAAATCACTTTGGTATGTCCCTACTCGTATGGGGCTTCCCTGCAGTTAGACGGATGCCTTATAAGATATGAGCATGTTGATTTCTTGGGCAAGCTTGATACAAGCCTAAGGTATAGAAAATGCAGTAAAAGTGGTGGGACAGATGATGTTGAATTCTTTCGGCGAAGGGATGATGTGCTTGCTGACTTGCAAGGAGCAAATGGTTTTAGAGTTAGTAGCTCTGGTTTGGTTGAAGGGTTTGCTCAGTGTTTGGGCGATCTGACCCAAAACGACTGCTCTTCTTGCATTGCTGATGCTGTTGGAAAGTTGAAGAGTTTATGTGGATCAGCAGCAGCTGTGGATGTGTTCTTGGCTCAGTGTTATGCTCGGTATTGGGCTTCTGGCTACTATAAAGCCTCAGATTTCTCTAACGAAGACAATGCGGGAAAGACAGTGGCCATTATTGTTGGGGCAGTAGCAGGTTTAGCTATTCTAATTGTTCTTCTCTCAATTTGCAGGAAAACGATGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

293

Amino Acids

31.7

Weight (kDa)

7.9

Isoelectric Point (pI)

22.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 51 - 147 9.5e-21 Salt stress response/antifungal
Stress-antifung PF01657 163 - 246 7.9e-11 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 815
AciI CCGC 2 cut(s) 130, 788
AclWI GGATC 3 cut(s) 282, 295, 697
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 4 cut(s) 188, 518, 599, 676
AluBI AGCT 6 cut(s) 225, 273, 460, 585, 701, 833
AluI AGCT 6 cut(s) 225, 273, 460, 585, 701, 833
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 3 cut(s) 282, 295, 697
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 1 cut(s) 801
ApeKI GCWGC 3 cut(s) 150, 695, 698
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 171, 329
AxyI CCTNAGG 1 cut(s) 473
BalI TGGCCA 1 cut(s) 803
BamHI GGATCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 786
BbvI GCAGC 3 cut(s) 137, 707, 710
BccI CCATC 2 cut(s) 299, 865
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 3 cut(s) 151, 696, 699
BlsI GCNGC 3 cut(s) 152, 697, 700
BmiI GGNNCC 1 cut(s) 289
BmsI GCATC 4 cut(s) 141, 357, 410, 649
BpiI GAAGAC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 109, 313
Bse1I ACTGG 1 cut(s) 307
Bse21I CCTNAGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 109, 313
BseGI GGATG 4 cut(s) 227, 425, 541, 712
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 623, 734, 777
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 3 cut(s) 137, 707, 710
BshFI GGCC 1 cut(s) 803
BslFI GGGAC 2 cut(s) 369, 517
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 369, 517
BsnI GGCC 1 cut(s) 803
Bsp143I GATC 3 cut(s) 287, 622, 689
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 130, 788
BspANI GGCC 1 cut(s) 803
BspCNI CTCAG 3 cut(s) 622, 733, 776
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 289
BspMAI CTGCAG 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 3 cut(s) 282, 295, 697
BspQI GCTCTTC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 109, 313
BssMI GATC 3 cut(s) 287, 622, 689
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 299, 799
Bst6I CTCTTC 2 cut(s) 649, 671
BstC8I GCNNGC 3 cut(s) 148, 458, 546
BstDEI CTNAG 5 cut(s) 49, 473, 609, 720, 763
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 4 cut(s) 227, 425, 541, 712
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 290, 625, 692
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 3 cut(s) 287, 622, 689
BstMWI GCNNNNNNNGC 4 cut(s) 345, 354, 648, 830
BstNSI RCATGY 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 137, 707, 710
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 1 cut(s) 803
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 4 cut(s) 227, 425, 541, 712
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 5 cut(s) 314, 366, 617, 728, 804
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 3 cut(s) 148, 458, 546
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 6
CfoI GCGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 304
CviAII CATG 3 cut(s) 7, 110, 440
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 5 cut(s) 49, 473, 609, 720, 763
DpnI GATC 3 cut(s) 289, 624, 691
DpnII GATC 3 cut(s) 287, 622, 689
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 2 cut(s) 649, 671
EarI CTCTTC 2 cut(s) 649, 671
Eco130I CCWWGG 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 3 cut(s) 10, 113, 443
FaqI GGGAC 2 cut(s) 369, 517
FatI CATG 3 cut(s) 6, 109, 439
FauI CCCGC 2 cut(s) 137, 781
Fnu4HI GCNGC 3 cut(s) 151, 696, 699
FokI GGATG 4 cut(s) 214, 432, 548, 719
Fsp4HI GCNGC 3 cut(s) 151, 696, 699
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 151, 696, 699
HaeIII GGCC 1 cut(s) 803
HhaI GCGC 1 cut(s) 359
Hin1II CATG 3 cut(s) 10, 113, 443
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 1 cut(s) 364
HphI GGTGA 2 cut(s) 171, 329
Hpy188I TCNGA 3 cut(s) 263, 627, 766
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 4 cut(s) 26, 278, 525, 593
HpyCH4III ACNGT 2 cut(s) 299, 799
HpyCH4V TGCA 8 cut(s) 146, 257, 348, 409, 489, 556, 651, 861
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 354, 648, 830
HpyF3I CTNAG 5 cut(s) 49, 473, 609, 720, 763
Hsp92II CATG 3 cut(s) 10, 113, 443
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 287, 622, 689
LguI GCTCTTC 1 cut(s) 649
LmnI GCTCC 2 cut(s) 158, 560
LpnPI CCDG 9 cut(s) 68, 132, 294, 320, 419, 573, 732, 810, 847
Lsp1109I GCAGC 3 cut(s) 137, 707, 710
LweI GCATC 4 cut(s) 141, 357, 410, 649
MaeIII GTNAC 1 cut(s) 317
MalI GATC 3 cut(s) 289, 624, 691
MboI GATC 3 cut(s) 287, 622, 689
MboII GAAGA 5 cut(s) 127, 636, 688, 791, 839
MflI RGATCY 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 4 cut(s) 250, 518, 840, 855
MluNI TGGCCA 1 cut(s) 803
MmeI TCCRAC 2 cut(s) 241, 646
MnlI CCTC 6 cut(s) 79, 82, 206, 241, 308, 772
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 803
MseI TTAA 2 cut(s) 323, 877
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 1 cut(s) 701
MwoI GCNNNNNNNGC 4 cut(s) 345, 354, 648, 830
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 287, 622, 689
NlaIII CATG 3 cut(s) 10, 113, 443
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 1 cut(s) 443
PagI TCATGA 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 3 cut(s) 152, 697, 700
PsiI TTATAA 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 289
PstI CTGCAG 1 cut(s) 411
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 649
SaqAI TTAA 2 cut(s) 323, 877
SatI GCNGC 3 cut(s) 151, 696, 699
Sau3AI GATC 3 cut(s) 287, 622, 689
SfaNI GCATC 4 cut(s) 141, 357, 410, 649
SfcI CTRYAG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 4 cut(s) 250, 518, 840, 855
SsiI CCGC 2 cut(s) 130, 788
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 299, 799
TaqI TCGA 1 cut(s) 333
TasI AATT 4 cut(s) 250, 518, 840, 855
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 323, 877
Tru9I TTAA 2 cut(s) 323, 877
TscAI CASTG 5 cut(s) 314, 366, 617, 728, 804
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 3 cut(s) 150, 695, 698
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 23, 127
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 5 cut(s) 314, 366, 617, 728, 804
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.