Rw1G018830

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010300
Physical Location & Seq
Forward (+)
41352760 .. 41355547
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018830.1

Sequence Viewer

Length: 873 bp
ATGAGCAACCTTCACTTACACTCTTCCATTTCCAAAGCAATCTTAGCCCTGCGAATCTCTTCCCTTTTCTTTCTCTTTTCTTCACTCAATACCACCCATGGCTCCCCAATCAAAGCTAACATCTTCATCTATGCGGGCTGCTCACAAGAAAAGTACCAACCAAACTCACCCTTTGAAGCTAACCTCAACTCTTTCCTAACCTCAGTTGTTAGCTCATCCTCTCAAGCCTCTTACAACGCCTTTTCTGTCGGAAACGGAACCTCAACATCACCAGAAGGTGGCATTTATGGCTTGTACCAGTGCAGAGGTGACTTAAAGATTTTTGACTGTTCGAAATGCATCGAAAGCGCGGTGAATCAAGTCACTCTAGTCTGTCCCTACTCTTATGGCGCCTCTTTGCAGTTACAAGGTTGTTATGTTAGATACGAGCATGCTGAGTTTTTGGGCAAGCTTGATACAAGTTTGAGGTACAAGAAATGTAGTAAGACTGTACATGAAGATGTTGAGTTCTTTCGGAGAAGAGATGACGTGCTAGCTGACTTGCAAGGGACTAGTGGATTTAGGGTTAGTAGTTCAGGCTTGGTTGAGGGTTTTGCGCAGTGTTTGGGGGATTTGAGCCAAAACGACTGCTCTTCTTGCGTCGCAGATGCTGTGGGAAAGCTGAAGAGTTTGTGTGGGTCAGCAGCTGCGGTAGATGTGTTCTTGGCTCAGTGTTATGCTAGGTACTGGGCTTCTGGCTACTACGATATCTCAGATTCCTCTAACGAAGACCAAGTGGGAAAGACTGTGGCCATTATCGTGGGGGTGGTAGCAAGTCTAGCTATTCTCATTGTTCTTCTATCAGTTTGCCGGAAAACCATGGGTCGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

290

Amino Acids

31.37

Weight (kDa)

6.91

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 47 - 144 2.1e-20 Salt stress response/antifungal
Stress-antifung PF01657 160 - 242 9.5e-11 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 350
AciI CCGC 3 cut(s) 134, 350, 689
AcoI YGGCCR 1 cut(s) 789
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 5 cut(s) 155, 296, 470, 492, 725
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 176
AhlI ACTAGT 1 cut(s) 551
AjiI CACGTC 1 cut(s) 529
AluBI AGCT 8 cut(s) 116, 179, 213, 451, 536, 661, 686, 821
AluI AGCT 8 cut(s) 116, 179, 213, 451, 536, 661, 686, 821
AlwNI CAGNNNCTG 2 cut(s) 650, 686
AoxI GGCC 1 cut(s) 789
ApeKI GCWGC 3 cut(s) 138, 683, 686
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 3 cut(s) 350, 392, 598
AsuHPI GGTGA 4 cut(s) 159, 261, 320, 364
AsuII TTCGAA 1 cut(s) 332
AsuNHI GCTAGC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 791
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 125, 673, 695
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 5 cut(s) 368, 533, 552, 720, 818
BfoI RGCGCY 1 cut(s) 393
BisI GCNGC 3 cut(s) 139, 684, 687
BlsI GCNGC 3 cut(s) 140, 685, 688
BmgBI CACGTC 1 cut(s) 529
BmiI GGNNCC 3 cut(s) 103, 259, 391
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 2 cut(s) 348, 637
BmtI GCTAGC 1 cut(s) 536
BmuI ACTGGG 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 97, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 298, 731
BseDI CCNNGG 2 cut(s) 97, 858
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 4 cut(s) 216, 426, 722, 765
BseNI ACTGG 2 cut(s) 298, 731
BseXI GCAGC 3 cut(s) 125, 673, 695
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 1 cut(s) 791
BshNI GGYRCC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 850
BslFI GGGAC 2 cut(s) 360, 562
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 360, 562
BsnI GGCC 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 332
Bsp1407I TGTACA 1 cut(s) 490
Bsp19I CCATGG 2 cut(s) 97, 858
BspACI CCGC 3 cut(s) 134, 350, 689
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 4 cut(s) 215, 427, 721, 764
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 3 cut(s) 103, 259, 391
BspOI GCTAGC 1 cut(s) 536
BspQI GCTCTTC 1 cut(s) 637
BspT104I TTCGAA 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 2 cut(s) 298, 731
BssECI CCNNGG 2 cut(s) 97, 858
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 97, 858
Bst4CI ACNGT 3 cut(s) 329, 490, 787
Bst6I CTCTTC 5 cut(s) 28, 64, 514, 637, 659
BstACI GRCGYC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 490
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 4 cut(s) 136, 432, 449, 534
BstDEI CTNAG 5 cut(s) 43, 202, 435, 708, 751
BstDSI CCRYGG 2 cut(s) 97, 858
BstF5I GGATG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 3 cut(s) 350, 392, 598
BstMWI GCNNNNNNNGC 5 cut(s) 44, 288, 345, 636, 818
BstNSI RCATGY 1 cut(s) 434
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 125, 673, 695
BstV2I GAAGAC 1 cut(s) 774
BstXI CCANNNNNNTGG 1 cut(s) 799
BsuRI GGCC 1 cut(s) 791
BtgI CCRYGG 2 cut(s) 97, 858
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 3 cut(s) 305, 605, 716
Cac8I GCNNGC 4 cut(s) 136, 432, 449, 534
CaiI CAGNNNCTG 2 cut(s) 650, 686
CfoI GCGC 3 cut(s) 350, 392, 598
CseI GACGC 1 cut(s) 628
Csp6I GTAC 5 cut(s) 154, 295, 469, 491, 724
CviAII CATG 4 cut(s) 98, 431, 494, 859
CviQI GTAC 5 cut(s) 154, 295, 469, 491, 724
DdeI CTNAG 5 cut(s) 43, 202, 435, 708, 751
DinI GGCGCC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 5 cut(s) 28, 64, 514, 637, 659
EarI CTCTTC 5 cut(s) 28, 64, 514, 637, 659
Eco130I CCWWGG 2 cut(s) 97, 858
Eco32I GATATC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 683
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 97, 858
EcoT22I ATGCAT 1 cut(s) 341
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 97, 858
FaeI CATG 4 cut(s) 101, 434, 497, 862
FaiI YATR 9 cut(s) 99, 132, 288, 387, 417, 432, 495, 717, 860
FaqI GGGAC 2 cut(s) 360, 562
FatI CATG 4 cut(s) 97, 430, 493, 858
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 139, 684, 687
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 139, 684, 687
FspBI CTAG 5 cut(s) 368, 533, 552, 720, 818
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 3 cut(s) 349, 391, 597
GluI GCNGC 3 cut(s) 139, 684, 687
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 1 cut(s) 791
HapII CCGG 1 cut(s) 850
HgaI GACGC 1 cut(s) 628
HhaI GCGC 3 cut(s) 350, 392, 598
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 4 cut(s) 101, 434, 497, 862
Hin6I GCGC 3 cut(s) 348, 390, 596
HinP1I GCGC 3 cut(s) 348, 390, 596
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 54, 355, 755
HpaII CCGG 1 cut(s) 850
HphI GGTGA 4 cut(s) 159, 261, 320, 364
Hpy188I TCNGA 3 cut(s) 251, 516, 754
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 2 cut(s) 20, 269
HpyCH4III ACNGT 3 cut(s) 329, 490, 787
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 303, 339, 400, 544
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 288, 345, 636, 818
HpyF3I CTNAG 5 cut(s) 43, 202, 435, 708, 751
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 4 cut(s) 101, 434, 497, 862
HspAI GCGC 3 cut(s) 348, 390, 596
KasI GGCGCC 1 cut(s) 389
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 7 cut(s) 62, 285, 311, 561, 712, 720, 863
Lsp1109I GCAGC 3 cut(s) 125, 673, 695
LweI GCATC 2 cut(s) 348, 637
MaeI CTAG 5 cut(s) 368, 533, 552, 720, 818
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 308, 361, 402
MlsI TGGCCA 1 cut(s) 791
MluNI TGGCCA 1 cut(s) 791
Mly113I GGCGCC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 229
Mox20I TGGCCA 1 cut(s) 791
Mph1103I ATGCAT 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 1 cut(s) 791
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 2 cut(s) 498, 797
Msp20I TGGCCA 1 cut(s) 791
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 850
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 5 cut(s) 44, 288, 345, 636, 818
NarI GGCGCC 1 cut(s) 390
NcoI CCATGG 2 cut(s) 97, 858
NheI GCTAGC 1 cut(s) 532
NlaIII CATG 4 cut(s) 101, 434, 497, 862
NlaIV GGNNCC 3 cut(s) 103, 259, 391
NmuCI GTSAC 2 cut(s) 308, 361
NsbI TGCGCA 1 cut(s) 597
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 332
PaeI GCATGC 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 54, 355, 755
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 3 cut(s) 140, 685, 688
PluTI GGCGCC 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 103, 259, 391
PstNI CAGNNNCTG 2 cut(s) 650, 686
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 5 cut(s) 155, 296, 470, 492, 725
RsaNI GTAC 5 cut(s) 154, 295, 469, 491, 724
RseI CAYNNNNRTG 2 cut(s) 498, 797
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 3 cut(s) 139, 684, 687
SfaNI GCATC 2 cut(s) 348, 637
SfoI GGCGCC 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 498, 797
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SpeI ACTAGT 1 cut(s) 551
SphI GCATGC 1 cut(s) 434
SsiI CCGC 3 cut(s) 134, 350, 689
SspDI GGCGCC 1 cut(s) 389
SspMI CTAG 5 cut(s) 368, 533, 552, 720, 818
StyI CCWWGG 2 cut(s) 97, 858
TaaI ACNGT 3 cut(s) 329, 490, 787
TaiI ACGT 1 cut(s) 531
TaqI TCGA 2 cut(s) 332, 342
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 3 cut(s) 54, 355, 755
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 3 cut(s) 305, 605, 716
TseFI GTSAC 2 cut(s) 308, 361
TseI GCWGC 3 cut(s) 138, 683, 686
Tsp45I GTSAC 2 cut(s) 308, 361
TspDTI ATGAA 2 cut(s) 115, 510
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 3 cut(s) 305, 605, 716
Van91I CCANNNNNTGG 1 cut(s) 278
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 5 cut(s) 368, 533, 552, 720, 818
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.