Rorug01G0204200

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010300
Physical Location & Seq
Reverse (-)
28489001 .. 28489303
303 bp
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UTR
Exon/CDS
Intron
Rorug01G0204200.1

Sequence Viewer

Length: 303 bp
ATGGAGGATAGAACTTGCTCATGTAGAAAGTGGGACCTTTGTGGTATTCCATGTTCTCATGCAATGACTTGTCTTGGTTGGATGGATGCGAGTCCATATGATTTTGTACATAACCATTACAAGAGGGAGGCTTATGACCGAGTCAATGGTTACTTCATTTCCCCAATGTCCAGTCAAGACTTGTGGCCTAAAACTGGTGGCATGCCGATTCTTCCACAACTCTATCATAAACAACCAGGAAGGCCCAAAAAGAGAAGAATTTTAGAACCAAATGAGATTCCCAAAGATTTGATAGGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

100

Amino Acids

11.6

Weight (kDa)

8.64

Isoelectric Point (pI)

83.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 2 - 22 1.5e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 258
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 235
AoxI GGCC 2 cut(s) 185, 242
ApoI RAATTY 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 34, 243
AvaII GGWCC 1 cut(s) 34
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 243
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 171, 199
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 87, 91
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 171, 199
BshFI GGCC 2 cut(s) 187, 244
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 2 cut(s) 187, 244
Bsp1407I TGTACA 1 cut(s) 106
BspANI GGCC 2 cut(s) 187, 244
BspLI GGNNCC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 2 cut(s) 171, 199
Bst2UI CCWGG 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 203
BstF5I GGATG 2 cut(s) 87, 91
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 235
BsuRI GGCC 2 cut(s) 187, 244
BtsCI GGATG 2 cut(s) 87, 91
Cac8I GCNNGC 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 34, 243
Csp6I GTAC 1 cut(s) 107
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 4 cut(s) 21, 51, 59, 202
CviJI RGCY 3 cut(s) 131, 187, 244
CviKI_1 RGCY 3 cut(s) 131, 187, 244
CviQI GTAC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 24, 54, 62, 205
FaiI YATR 9 cut(s) 22, 52, 60, 97, 99, 111, 135, 203, 228
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 20, 50, 58, 201
FauNDI CATATG 1 cut(s) 97
FokI GGATG 2 cut(s) 94, 98
HaeIII GGCC 2 cut(s) 187, 244
Hin1II CATG 4 cut(s) 24, 54, 62, 205
HinfI GANTC 4 cut(s) 91, 141, 208, 277
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 62
Hsp92II CATG 4 cut(s) 24, 54, 62, 205
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 4 cut(s) 180, 184, 222, 249
LweI GCATC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 2 cut(s) 203, 267
MluCI AATT 1 cut(s) 258
MlyI GAGTC 2 cut(s) 100, 150
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 2 cut(s) 117, 121
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 97
NlaIII CATG 4 cut(s) 24, 54, 62, 205
NlaIV GGNNCC 1 cut(s) 35
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 208, 277
PflFI GACNNNGTC 1 cut(s) 140
PleI GAGTC 2 cut(s) 99, 149
PpsI GAGTC 2 cut(s) 99, 149
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 34, 243
PspPPI RGGWCCY 1 cut(s) 34
PsrI GAACNNNNNNTAC 2 cut(s) 37, 69
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
Sau96I GGNCC 2 cut(s) 34, 243
SchI GAGTC 2 cut(s) 100, 150
ScrFI CCNGG 1 cut(s) 237
SetI ASST 1 cut(s) 39
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 34
SphI GCATGC 1 cut(s) 205
Sse9I AATT 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 235
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 208, 277
TspDTI ATGAA 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 258
XceI RCATGY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.