Prupe.2G140900_v2.0.a1

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010300
Physical Location & Seq
Forward (+)
19737977 .. 19740243
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G140900.1

Sequence Viewer

Length: 882 bp
ATGGTCATGAGCAACCTTCAGCTAGACTACTCTACTCAGAAAACAATCTTAGCCCCGAGAATCATAATCTCTTCTCTGCTTTTCCTTCTCTTTTCTTCACTTAGCATTCATGGCTACCCAATCCAAGCCCATATCTTCATCTATGCAGGCTGCTCTCAAGAAAAGTACCAACCAAGCTCACCCTTTGAAGCCAACCTCAACTCTTTTCTAACATCAGTTGTTAGCTCATCCTCTCAAGTCTCTTACAACAATTTTGGAGTTGGAAATGGAAGCTCAACAACACTAGAAGGCACCATATATGGCTTATACCAGTGCAGAGGTGACTTAAAGATTTTCGACTGCGCAAAATGCGTAGAGAGTGCAGTAAATCAAATTACTTTGGTTTGTCCCTACTCTTATGGGGCTTCTTTGCAGCTTGAGGGTTGTCTCATAAGATATGAGCATGTTAATTTCTTGGGGAGGCTTGACACAAGTCTTAGGTACAGAAAATGTAGTAAAAGTAGTGTGAGTGAAGATGTTGAATTCTTTAGGCGCAGAGATGATGTGCTTGCTGAATTGCAAGGAACAAATGGCTTTAGGGTTAGTAGCTCTGGTTTGGTTGAAGGTTTTGCTCAGTGTTTGGGGGATATGAGCCAAAATGACTGCTCTTCTTGCATTGCTGATGCTGTGGGAAAGTTGAAGAGTTTGTGTGGATCAGCAGCAGCTGTTGATGTGTTCTTGGCTCAGTGTTATGCTCGGTATTGGGCATCTGGCTACTATGATATCTCAGATTCCTCTAACCAAGACCAAGTGGGGAAGACAGTGGCCATTATTGTTGGGACAGTAGCAGGGCTAGCTATTCTGATTGTTATTCTCTCAGTTTGCAGGAAAACCATGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

294

Amino Acids

31.82

Weight (kDa)

5.93

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 290
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 1 cut(s) 521
AfaI GTAC 2 cut(s) 167, 482
AgsI TTSAA 4 cut(s) 188, 521, 602, 679
AluBI AGCT 8 cut(s) 22, 177, 225, 273, 415, 588, 704, 836
AluI AGCT 8 cut(s) 22, 177, 225, 273, 415, 588, 704, 836
Alw26I GTCTC 2 cut(s) 244, 431
AlwI GGATC 1 cut(s) 700
AlwNI CAGNNNCTG 1 cut(s) 704
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 1 cut(s) 804
ApeKI GCWGC 4 cut(s) 150, 412, 698, 701
ApoI RAATTY 1 cut(s) 521
AspLEI GCGC 2 cut(s) 344, 534
AsuHPI GGTGA 2 cut(s) 171, 332
AsuNHI GCTAGC 1 cut(s) 832
AvaI CYCGRG 1 cut(s) 55
BalI TGGCCA 1 cut(s) 806
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 4 cut(s) 137, 424, 710, 713
BcoDI GTCTC 2 cut(s) 244, 431
BfaI CTAG 3 cut(s) 23, 284, 833
BisI GCNGC 4 cut(s) 151, 413, 699, 702
BlsI GCNGC 4 cut(s) 152, 414, 700, 703
BmeT110I CYCGRG 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 292
BmsI GCATC 2 cut(s) 652, 755
BmtI GCTAGC 1 cut(s) 836
BoxI GACNNNNGTC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 803
BpuEI CTTGAG 3 cut(s) 141, 219, 437
BsaJI CCNNGG 1 cut(s) 873
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 873
BseGI GGATG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 5 cut(s) 50, 626, 737, 780, 870
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 4 cut(s) 137, 424, 710, 713
BsgI GTGCAG 2 cut(s) 334, 381
BshFI GGCC 1 cut(s) 806
BshNI GGYRCC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 55
BslFI GGGAC 2 cut(s) 372, 832
BsmAI GTCTC 2 cut(s) 244, 431
BsmFI GGGAC 2 cut(s) 372, 832
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 806
BsoBI CYCGRG 1 cut(s) 55
Bsp143I GATC 1 cut(s) 692
Bsp19I CCATGG 1 cut(s) 873
BspANI GGCC 1 cut(s) 806
BspCNI CTCAG 5 cut(s) 49, 625, 736, 779, 869
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 836
BspPI GGATC 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 652
BspT107I GGYRCC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 873
BssMI GATC 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 802, 823
Bst6I CTCTTC 3 cut(s) 76, 652, 674
BstC8I GCNNGC 3 cut(s) 148, 549, 834
BstDEI CTNAG 8 cut(s) 36, 49, 101, 476, 612, 723, 766, 856
BstDSI CCRYGG 1 cut(s) 873
BstF5I GGATG 1 cut(s) 227
BstHHI GCGC 2 cut(s) 344, 534
BstKTI GATC 1 cut(s) 695
BstMAI GTCTC 2 cut(s) 244, 431
BstMBI GATC 1 cut(s) 692
BstMWI GCNNNNNNNGC 4 cut(s) 111, 348, 651, 833
BstNSI RCATGY 1 cut(s) 446
BstPAI GACNNNNGTC 1 cut(s) 471
BstV1I GCAGC 4 cut(s) 137, 424, 710, 713
BstV2I GAAGAC 1 cut(s) 803
BsuRI GGCC 1 cut(s) 806
BtgI CCRYGG 1 cut(s) 873
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 4 cut(s) 317, 620, 731, 807
Cac8I GCNNGC 3 cut(s) 148, 549, 834
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 6
CfoI GCGC 2 cut(s) 344, 534
Csp6I GTAC 2 cut(s) 166, 481
CviAII CATG 4 cut(s) 7, 110, 443, 874
CviQI GTAC 2 cut(s) 166, 481
DdeI CTNAG 8 cut(s) 36, 49, 101, 476, 612, 723, 766, 856
DpnI GATC 1 cut(s) 694
DpnII GATC 1 cut(s) 692
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 3 cut(s) 76, 652, 674
EarI CTCTTC 3 cut(s) 76, 652, 674
Eco130I CCWWGG 1 cut(s) 873
Eco32I GATATC 1 cut(s) 763
Eco88I CYCGRG 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 521
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 4 cut(s) 10, 113, 446, 877
FaqI GGGAC 2 cut(s) 372, 832
FatI CATG 4 cut(s) 6, 109, 442, 873
Fnu4HI GCNGC 4 cut(s) 151, 413, 699, 702
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 4 cut(s) 151, 413, 699, 702
FspBI CTAG 3 cut(s) 23, 284, 833
FspI TGCGCA 1 cut(s) 343
GlaI GCGC 2 cut(s) 343, 533
GluI GCNGC 4 cut(s) 151, 413, 699, 702
HaeIII GGCC 1 cut(s) 806
HhaI GCGC 2 cut(s) 344, 534
Hin1II CATG 4 cut(s) 10, 113, 446, 877
Hin6I GCGC 2 cut(s) 342, 532
HinP1I GCGC 2 cut(s) 342, 532
HinfI GANTC 2 cut(s) 60, 770
HphI GGTGA 2 cut(s) 171, 332
Hpy188I TCNGA 3 cut(s) 39, 769, 843
Hpy188III TCNNGA 2 cut(s) 7, 158
HpyAV CCTTC 4 cut(s) 26, 95, 281, 596
HpyCH4III ACNGT 2 cut(s) 802, 823
HpyCH4V TGCA 7 cut(s) 146, 315, 362, 412, 559, 654, 864
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 348, 651, 833
HpyF3I CTNAG 8 cut(s) 36, 49, 101, 476, 612, 723, 766, 856
Hsp92II CATG 4 cut(s) 10, 113, 446, 877
HspAI GCGC 2 cut(s) 342, 532
Kzo9I GATC 1 cut(s) 692
LguI GCTCTTC 1 cut(s) 652
LpnPI CCDG 6 cut(s) 132, 323, 576, 735, 813, 850
Lsp1109I GCAGC 4 cut(s) 137, 424, 710, 713
LweI GCATC 2 cut(s) 652, 755
MaeI CTAG 3 cut(s) 23, 284, 833
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 694
MboI GATC 1 cut(s) 692
MboII GAAGA 7 cut(s) 63, 87, 127, 524, 639, 691, 808
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 5 cut(s) 250, 372, 448, 521, 554
MluNI TGGCCA 1 cut(s) 806
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 6 cut(s) 206, 241, 311, 412, 453, 784
Mox20I TGGCCA 1 cut(s) 806
MscI TGGCCA 1 cut(s) 806
MseI TTAA 3 cut(s) 326, 447, 880
Msp20I TGGCCA 1 cut(s) 806
MspA1I CMGCKG 1 cut(s) 704
Mva1269I GAATGC 1 cut(s) 105
MwoI GCNNNNNNNGC 4 cut(s) 111, 348, 651, 833
NcoI CCATGG 1 cut(s) 873
NdeII GATC 1 cut(s) 692
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 4 cut(s) 10, 113, 446, 877
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 320
NsbI TGCGCA 1 cut(s) 343
NspI RCATGY 1 cut(s) 446
PagI TCATGA 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 652
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 60, 770
PkrI GCNGC 4 cut(s) 152, 414, 700, 703
PshAI GACNNNNGTC 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 2 cut(s) 167, 482
RsaNI GTAC 2 cut(s) 166, 481
SapI GCTCTTC 1 cut(s) 652
SaqAI TTAA 3 cut(s) 326, 447, 880
SatI GCNGC 4 cut(s) 151, 413, 699, 702
Sau3AI GATC 1 cut(s) 692
SfaNI GCATC 2 cut(s) 652, 755
SmlI CTYRAG 3 cut(s) 156, 234, 416
SmoI CTYRAG 3 cut(s) 156, 234, 416
Sse9I AATT 5 cut(s) 250, 372, 448, 521, 554
SspMI CTAG 3 cut(s) 23, 284, 833
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 2 cut(s) 802, 823
TaqI TCGA 1 cut(s) 336
TasI AATT 5 cut(s) 250, 372, 448, 521, 554
TfiI GAWTC 2 cut(s) 60, 770
Tru1I TTAA 3 cut(s) 326, 447, 880
Tru9I TTAA 3 cut(s) 326, 447, 880
TscAI CASTG 4 cut(s) 317, 620, 731, 807
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 4 cut(s) 150, 412, 698, 701
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 98, 127
TspRI CASTG 4 cut(s) 317, 620, 731, 807
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 446
XspI CTAG 3 cut(s) 23, 284, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.