pycom07g10630

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010300
Physical Location & Seq
Reverse (-)
10803064 .. 10805176
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10630.2

Sequence Viewer

Length: 900 bp
ATGGTCATGAACAACCTTCACTTACACTACTCTACACAGAAAACAATCTTAGCCCAGAGAATAATAATCTCCTCTATTTTCTTTCTCTTTTCTACACTAATCACTATCCATGGCTACCCAATCAAATCCCGCATCTTCATCTATGCAGGCTGCTCCCAAGAAAAATACCAACTAAACTCACCCTTTGAAGCCAACCTCAACTCTTTCCTATCATCAGTTGTCAGCTCATCCTCTCAAGTCTCTTACAACAATTTTGCAGTCGGAAATGGAAGCTCAACACCAGATGGAAGCTCAACACCAGAAGGATCCATCTACGGTTTGTACCAGTGCCGAGGTGACTTAAAGATTTTCGACTGCTCAAAATGCATCGTAAGCGCAGTGAATCAAATCACTTTGGTATGTCCCTACTCGTATGGGGCTTCCCTGCAGTTAGACGGATGCCTTGTAAGATATGAGCATGTTGATTTCTTGGGGAAGCTTGATACAAGCCTAAGGTATAGAAAATGCAGTAAAAGTGGTGTGAAAGATGATGTTGAATTCTTTCGGCGAAGGGATGATGTGCTTGCTGACTTGCAAGGGGCAAATGGTTTTAGGGTTACTAGCTCTGGTTTGGTTGAAGGGTTTGCTCAGTGTTTGGGCGATTTGACCCAAAACGACTGCTCTTCTTGCATTGCTGATGCTGTTGGAAAGCTGAAGAGTTTATGTGGATCAGCAGCAGCTGTTGATGTGTTCTTGGCTCAGTGTTATGCTCGGTATTGGGCGTCTGGTTACTATAAAGCCTCAGATTTCTCTAACGAAGACAATGCGGGAAAGACAGTGGCCATTATTGTTGGGGCAGTAGCAGGTTTAGCTATTCTAATTGTTCTTCTCTCAATTTGCAGGAAAACGATGGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

300

Amino Acids

32.47

Weight (kDa)

8.17

Isoelectric Point (pI)

20.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 833
AciI CCGC 2 cut(s) 130, 806
AclWI GGATC 3 cut(s) 300, 313, 715
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 713
AcyI GRCGYC 1 cut(s) 761
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 3 cut(s) 188, 536, 617
AluBI AGCT 8 cut(s) 225, 273, 291, 478, 603, 691, 719, 851
AluI AGCT 8 cut(s) 225, 273, 291, 478, 603, 691, 719, 851
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 3 cut(s) 300, 313, 715
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 3 cut(s) 150, 713, 716
ApoI RAATTY 1 cut(s) 536
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 171, 347
AxyI CCTNAGG 1 cut(s) 491
BalI TGGCCA 1 cut(s) 821
BamHI GGATCC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 804
BbvI GCAGC 3 cut(s) 137, 725, 728
BccI CCATC 3 cut(s) 278, 317, 883
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 833
BisI GCNGC 3 cut(s) 151, 714, 717
BlsI GCNGC 3 cut(s) 152, 715, 718
BmiI GGNNCC 1 cut(s) 307
BmsI GCATC 4 cut(s) 141, 375, 428, 667
BpiI GAAGAC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 761
BsaJI CCNNGG 2 cut(s) 109, 331
Bse1I ACTGG 1 cut(s) 325
Bse21I CCTNAGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 669
BseDI CCNNGG 2 cut(s) 109, 331
BseGI GGATG 3 cut(s) 227, 443, 559
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 3 cut(s) 641, 752, 795
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 3 cut(s) 137, 725, 728
BshFI GGCC 1 cut(s) 821
BslFI GGGAC 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 1 cut(s) 821
Bsp143I GATC 2 cut(s) 305, 707
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 130, 806
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 3 cut(s) 640, 751, 794
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 833
BspPI GGATC 3 cut(s) 300, 313, 715
BspQI GCTCTTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 109, 331
BssMI GATC 2 cut(s) 305, 707
BssNI GRCGYC 1 cut(s) 761
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 317, 817
Bst6I CTCTTC 2 cut(s) 667, 689
BstACI GRCGYC 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 148, 564
BstDEI CTNAG 5 cut(s) 49, 491, 627, 738, 781
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 227, 443, 559
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 2 cut(s) 308, 710
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 305, 707
BstMWI GCNNNNNNNGC 4 cut(s) 363, 372, 666, 848
BstNSI RCATGY 1 cut(s) 461
BstSFI CTRYAG 1 cut(s) 425
BstV1I GCAGC 3 cut(s) 137, 725, 728
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
Bsu36I CCTNAGG 1 cut(s) 491
BsuRI GGCC 1 cut(s) 821
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 227, 443, 559
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 5 cut(s) 332, 384, 635, 746, 822
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 2 cut(s) 148, 564
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 1 cut(s) 6
CfoI GCGC 1 cut(s) 377
CseI GACGC 1 cut(s) 750
Csp6I GTAC 1 cut(s) 322
CviAII CATG 3 cut(s) 7, 110, 458
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 5 cut(s) 49, 491, 627, 738, 781
DpnI GATC 2 cut(s) 307, 709
DpnII GATC 2 cut(s) 305, 707
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 2 cut(s) 667, 689
EarI CTCTTC 2 cut(s) 667, 689
Eco130I CCWWGG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 713
Eco81I CCTNAGG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 3 cut(s) 10, 113, 461
FaqI GGGAC 1 cut(s) 387
FatI CATG 3 cut(s) 6, 109, 457
FauI CCCGC 2 cut(s) 137, 799
Fnu4HI GCNGC 3 cut(s) 151, 714, 717
FokI GGATG 3 cut(s) 214, 450, 566
Fsp4HI GCNGC 3 cut(s) 151, 714, 717
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 376
GluI GCNGC 3 cut(s) 151, 714, 717
HaeIII GGCC 1 cut(s) 821
HgaI GACGC 1 cut(s) 750
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 3 cut(s) 10, 113, 461
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 1 cut(s) 382
HphI GGTGA 2 cut(s) 171, 347
Hpy188I TCNGA 2 cut(s) 263, 784
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 4 cut(s) 26, 296, 543, 611
HpyCH4III ACNGT 2 cut(s) 317, 817
HpyCH4V TGCA 8 cut(s) 146, 257, 366, 427, 507, 574, 669, 879
HpyF10VI GCNNNNNNNGC 4 cut(s) 363, 372, 666, 848
HpyF3I CTNAG 5 cut(s) 49, 491, 627, 738, 781
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 3 cut(s) 10, 113, 461
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 305, 707
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 3 cut(s) 137, 725, 728
LweI GCATC 4 cut(s) 141, 375, 428, 667
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 3 cut(s) 335, 595, 767
MalI GATC 2 cut(s) 307, 709
MboI GATC 2 cut(s) 305, 707
MboII GAAGA 5 cut(s) 127, 654, 706, 809, 857
MflI RGATCY 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 4 cut(s) 250, 536, 858, 873
MluNI TGGCCA 1 cut(s) 821
MmeI TCCRAC 2 cut(s) 241, 664
MnlI CCTC 5 cut(s) 82, 206, 241, 326, 790
Mox20I TGGCCA 1 cut(s) 821
Mph1103I ATGCAT 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 821
MseI TTAA 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 363, 372, 666, 848
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 305, 707
NlaIII CATG 3 cut(s) 10, 113, 461
NlaIV GGNNCC 1 cut(s) 307
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 335
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 1 cut(s) 461
PagI TCATGA 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 3 cut(s) 152, 715, 718
PspN4I GGNNCC 1 cut(s) 307
PstI CTGCAG 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 3 cut(s) 151, 714, 717
Sau3AI GATC 2 cut(s) 305, 707
SfaNI GCATC 4 cut(s) 141, 375, 428, 667
SfcI CTRYAG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 4 cut(s) 250, 536, 858, 873
SsiI CCGC 2 cut(s) 130, 806
SspMI CTAG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 317, 817
TaqI TCGA 1 cut(s) 351
TasI AATT 4 cut(s) 250, 536, 858, 873
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 5 cut(s) 332, 384, 635, 746, 822
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 3 cut(s) 150, 713, 716
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 23, 127
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 5 cut(s) 332, 384, 635, 746, 822
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 600
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.