pycom02g17030

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010300
Physical Location & Seq
Reverse (-)
14443273 .. 14445055
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17030.2

Sequence Viewer

Length: 903 bp
ATGGTCATGAACAACCTTCACTTACACTACTCTACTCAGAAAACCATCTTAGCCCTGAGAATAATAATCTCCTCTATTTTCTTTGTCTTTTCTTCACTAATCACTATCCATGGAAATTCAATTAAATCCCACGTCTTCATCTATGCAGGCTGCTCCCAAGACAAATACCAACCTAACTCACCCTTTGAAGCCAACCTCAACTCTTTCCTTTCATCAGTTGTCAGCTCATCCTCTCAAGTCTCTTACAACAATTTTGCTGTCGGAAATGGAAGCACAACACCAGAAGGCTCCATCTACGGCTTGTACCAGTGCCGGGGTGACTTAAAGATTTTCGACTGCTCAAAATGCATCGAAAGTGCAGTGAATCAAATCACTTTGGTATGCCCCTACTCTTATGGGGCTTCCCTGCAGTTAGAAGGATGCCTTGTAAGATATGAGCATGTCGACTTCTTGGGCAAGCTTGATACAAGCCTTAGGTATAGAAAATGCAGTAAAAGTGGTGTGAACGATGATGTCGAATTCTTTAGGCGAAGAGATGATGTGCTTGCTGACTTGCAAAGAGCAAATGGTTTTAGGGTTAGCAGCTCTGGTTTGGTTGAAGGGTTTGCTCAGTGTTTGGGGGATTTGATCCAAAATGACTGCTCTTCTTGTATTGCTGATGCTGTGGGAAAGTTGAAGAGTTTATGCGGATCGGCTGCAGCTGTTGATGTGTTCTTGGGTCAGTGTTATGCCCGCTATTGGGCTTCTGGCTACTATGAAGTCTCAGATTCCTCTAACGAAGACAATGCAGGAAAGACAGTGGCCATTATTATTGGGGCAGTAGCAGGTTTAGCTGTTCTAATTGTTCTTCTCTCAGTTTGCAGGAAAACGATGGGTAAACAAACTACAAATATTCTCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

301

Amino Acids

32.61

Weight (kDa)

6.91

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 815
AccI GTMKAC 1 cut(s) 444
AciI CCGC 2 cut(s) 687, 733
AclWI GGATC 2 cut(s) 622, 697
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 2 cut(s) 115, 518
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 3 cut(s) 313, 738, 739
AgsI TTSAA 4 cut(s) 120, 188, 599, 676
AjiI CACGTC 1 cut(s) 133
AluBI AGCT 5 cut(s) 225, 460, 585, 701, 833
AluI AGCT 5 cut(s) 225, 460, 585, 701, 833
Alw26I GTCTC 2 cut(s) 244, 766
AlwI GGATC 2 cut(s) 622, 697
AoxI GGCC 1 cut(s) 801
ApeKI GCWGC 4 cut(s) 150, 582, 695, 698
ApoI RAATTY 2 cut(s) 115, 518
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 171, 329
AxyI CCTNAGG 1 cut(s) 473
BalI TGGCCA 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 127, 786
BbvI GCAGC 4 cut(s) 137, 594, 682, 710
BccI CCATC 3 cut(s) 53, 299, 865
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 244, 766
BfmI CTRYAG 2 cut(s) 407, 696
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 4 cut(s) 151, 583, 696, 699
BlsI GCNGC 4 cut(s) 152, 584, 697, 700
Bme1390I CCNGG 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 3 cut(s) 357, 410, 649
BpiI GAAGAC 2 cut(s) 127, 786
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 109, 313
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 738, 739
Bse1I ACTGG 1 cut(s) 307
Bse21I CCTNAGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 109, 313
BseGI GGATG 2 cut(s) 227, 425
BseLI CCNNNNNNNGG 3 cut(s) 313, 738, 739
BseMII CTCAG 5 cut(s) 47, 50, 623, 777, 867
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 4 cut(s) 137, 594, 682, 710
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 803
BsiSI CCGG 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 313, 738, 739
BsmAI GTCTC 2 cut(s) 244, 766
BsnI GGCC 1 cut(s) 803
Bsp143I GATC 2 cut(s) 627, 689
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 687, 733
BspANI GGCC 1 cut(s) 803
BspCNI CTCAG 5 cut(s) 48, 49, 622, 776, 866
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 289
BspMAI CTGCAG 2 cut(s) 411, 700
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 2 cut(s) 622, 697
BspQI GCTCTTC 1 cut(s) 649
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 109, 313
BssMI GATC 2 cut(s) 627, 689
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 799
Bst6I CTCTTC 3 cut(s) 526, 649, 671
BstC8I GCNNGC 4 cut(s) 148, 458, 546, 733
BstDEI CTNAG 7 cut(s) 36, 49, 56, 473, 609, 763, 853
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 227, 425
BstKTI GATC 2 cut(s) 630, 692
BstMAI GTCTC 2 cut(s) 244, 766
BstMBI GATC 2 cut(s) 627, 689
BstMWI GCNNNNNNNGC 2 cut(s) 345, 830
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 2 cut(s) 407, 696
BstV1I GCAGC 4 cut(s) 137, 594, 682, 710
BstV2I GAAGAC 2 cut(s) 127, 786
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 1 cut(s) 803
BtgI CCRYGG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 227, 425
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 5 cut(s) 314, 366, 617, 728, 804
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 4 cut(s) 148, 458, 546, 733
CciI TCATGA 1 cut(s) 6
Csp6I GTAC 1 cut(s) 304
CviAII CATG 3 cut(s) 7, 110, 440
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 7 cut(s) 36, 49, 56, 473, 609, 763, 853
DpnI GATC 2 cut(s) 629, 691
DpnII GATC 2 cut(s) 627, 689
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 3 cut(s) 526, 649, 671
EarI CTCTTC 3 cut(s) 526, 649, 671
Eco130I CCWWGG 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 3 cut(s) 10, 113, 443
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 3 cut(s) 6, 109, 439
FauI CCCGC 1 cut(s) 740
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 4 cut(s) 151, 583, 696, 699
FokI GGATG 2 cut(s) 214, 432
Fsp4HI GCNGC 4 cut(s) 151, 583, 696, 699
GluI GCNGC 4 cut(s) 151, 583, 696, 699
HaeIII GGCC 1 cut(s) 803
HapII CCGG 1 cut(s) 313
Hin1II CATG 3 cut(s) 10, 113, 443
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 364, 767
HpaII CCGG 1 cut(s) 313
HphI GGTGA 2 cut(s) 171, 329
Hpy166II GTNNAC 3 cut(s) 445, 505, 878
Hpy188I TCNGA 3 cut(s) 39, 263, 766
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 3 cut(s) 445, 505, 878
HpyAV CCTTC 4 cut(s) 26, 278, 410, 593
HpyCH4III ACNGT 1 cut(s) 799
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 9 cut(s) 146, 348, 359, 409, 489, 556, 698, 788, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 830
HpyF3I CTNAG 7 cut(s) 36, 49, 56, 473, 609, 763, 853
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 3 cut(s) 10, 113, 443
Kzo9I GATC 2 cut(s) 627, 689
LguI GCTCTTC 1 cut(s) 649
LmnI GCTCC 2 cut(s) 158, 293
Lsp1109I GCAGC 4 cut(s) 137, 594, 682, 710
LweI GCATC 3 cut(s) 357, 410, 649
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 629, 691
MboI GATC 2 cut(s) 627, 689
MboII GAAGA 7 cut(s) 84, 127, 543, 636, 688, 791, 839
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 5 cut(s) 115, 120, 250, 518, 840
MluNI TGGCCA 1 cut(s) 803
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 4 cut(s) 82, 206, 241, 781
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 350
MscI TGGCCA 1 cut(s) 803
MseI TTAA 2 cut(s) 123, 323
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 345, 830
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 627, 689
NlaIII CATG 3 cut(s) 10, 113, 443
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 1 cut(s) 443
PagI TCATGA 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 2 cut(s) 364, 767
PkrI GCNGC 4 cut(s) 152, 584, 697, 700
PspN4I GGNNCC 1 cut(s) 289
PstI CTGCAG 2 cut(s) 411, 700
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SalI GTCGAC 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 649
SaqAI TTAA 2 cut(s) 123, 323
SatI GCNGC 4 cut(s) 151, 583, 696, 699
Sau3AI GATC 2 cut(s) 627, 689
ScrFI CCNGG 1 cut(s) 314
SfaNI GCATC 3 cut(s) 357, 410, 649
SfcI CTRYAG 2 cut(s) 407, 696
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 5 cut(s) 115, 120, 250, 518, 840
SsiI CCGC 2 cut(s) 687, 733
SspI AATATT 1 cut(s) 892
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 799
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 333, 351, 444, 516
TasI AATT 5 cut(s) 115, 120, 250, 518, 840
TfiI GAWTC 2 cut(s) 364, 767
Tru1I TTAA 2 cut(s) 123, 323
Tru9I TTAA 2 cut(s) 123, 323
TscAI CASTG 5 cut(s) 314, 366, 617, 728, 804
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 4 cut(s) 150, 582, 695, 698
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 23, 127, 201, 771
TspRI CASTG 5 cut(s) 314, 366, 617, 728, 804
XapI RAATTY 2 cut(s) 115, 518
XceI RCATGY 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.