Rmu_co8400581.1_g000001

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8400581.1
OG0010300
Physical Location & Seq
Forward (+)
1 .. 1205
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8400581.1_g000001.1.cds

Sequence Viewer

Length: 623 bp
ttgttagctcatcctctcaagcctcttacaacgccttttctgtcggaaacggaacctcaacatcaccagaaggtggcatttatggcttgtaccagtgcagaggtgacttaaagatttttgactgttcgaaatgcatcgaaagcgcggtgaatcaagtcactctagtctgtccctactcttatggcgcctctttgcagttacaaggttgttatgttagatacgagcatgctgagtttttgggcaagcttgatacaagtttgaggtacaagaaatgtagtaagactgtacatgaagatgttgagttctttcggagaagagatgacgtgctagctgacttgcaagggactagtggatttagggttagtagttcaggcttggttgagggttttgcgcagtgtttgggggatttgagccaaaacgactgctcttcttgcgtcgcagatgctgtgggaaagctgaagagtttgtgtgggtcagcagctgcggtagatgtgttcttggctcagtgttatgctaggtactgggcttctggctactacgatatctcagaacatattgactactttcgttattggaagagaatacgagtaattaaactcatcagaacagggtcaataaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

206

Amino Acids

22.76

Weight (kDa)

8.0

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60720 AT3G60720 AT3G60720
fragaria_vesca FvH4_7g11310 FvH4_7g11310
malus_domestica MD02G1208100.v1.1 MD07G1117900.v1.1
prunus_persica Prupe.2G140900_v2.0.a1
pyrus_communis pycom02g17030 pycom07g10630
rosa_chinensis RchiOBHm_Chr1g0349511
rosa_laevigata RLG00000028545
rosa_multiflora Rmu_co8400581.1_g000001 Rmu_sc0002495.1_g000015
rosa_roxburghii Rroxscaffold_4G00305500
rosa_rugosa Rorug01G0204200
rosa_samantha Rh1AG221500 Rh1BG187600 Rh1CG206400 Rh1DG216900
rosa_wichuraiana Rw1G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 73
AccII CGCG 1 cut(s) 145
AciI CCGC 2 cut(s) 145, 484
AcuI CTGAAG 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 4 cut(s) 91, 265, 287, 520
AfiI CCNNNNNNNGG 1 cut(s) 73
AhlI ACTAGT 1 cut(s) 346
AjiI CACGTC 1 cut(s) 324
AluBI AGCT 5 cut(s) 8, 246, 331, 456, 481
AluI AGCT 5 cut(s) 8, 246, 331, 456, 481
AlwNI CAGNNNCTG 2 cut(s) 445, 481
ApeKI GCWGC 2 cut(s) 478, 481
AspLEI GCGC 3 cut(s) 145, 187, 393
AsuHPI GGTGA 3 cut(s) 56, 115, 159
AsuII TTCGAA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 468, 490
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 4 cut(s) 163, 328, 347, 515
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 2 cut(s) 479, 482
BlsI GCNGC 2 cut(s) 480, 483
BmgBI CACGTC 1 cut(s) 324
BmiI GGNNCC 2 cut(s) 54, 186
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 143, 432
BmtI GCTAGC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 93, 526
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 221, 517, 560
BseNI ACTGG 2 cut(s) 93, 526
BseXI GCAGC 2 cut(s) 468, 490
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 184
BslFI GGGAC 2 cut(s) 155, 357
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 155, 357
Bsp119I TTCGAA 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 285
BspACI CCGC 2 cut(s) 145, 484
BspCNI CTCAG 3 cut(s) 222, 516, 559
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 54, 186
BspOI GCTAGC 1 cut(s) 331
BspQI GCTCTTC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 2 cut(s) 93, 526
BssNI GRCGYC 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 124, 285
Bst6I CTCTTC 4 cut(s) 309, 432, 454, 571
BstACI GRCGYC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 227, 244, 329
BstDEI CTNAG 3 cut(s) 230, 503, 546
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 3 cut(s) 145, 187, 393
BstMWI GCNNNNNNNGC 3 cut(s) 83, 140, 431
BstNSI RCATGY 1 cut(s) 229
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 468, 490
BtrI CACGTC 1 cut(s) 324
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 100, 400, 511
Cac8I GCNNGC 3 cut(s) 227, 244, 329
CaiI CAGNNNCTG 2 cut(s) 445, 481
CfoI GCGC 3 cut(s) 145, 187, 393
CseI GACGC 1 cut(s) 423
Csp6I GTAC 4 cut(s) 90, 264, 286, 519
CviAII CATG 2 cut(s) 226, 289
CviQI GTAC 4 cut(s) 90, 264, 286, 519
DdeI CTNAG 3 cut(s) 230, 503, 546
DinI GGCGCC 1 cut(s) 186
Eam1104I CTCTTC 4 cut(s) 309, 432, 454, 571
EarI CTCTTC 4 cut(s) 309, 432, 454, 571
Eco32I GATATC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 478
EcoRV GATATC 1 cut(s) 543
EcoT22I ATGCAT 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaeI CATG 2 cut(s) 229, 292
FaiI YATR 7 cut(s) 83, 182, 212, 227, 290, 512, 554
FaqI GGGAC 2 cut(s) 155, 357
FatI CATG 2 cut(s) 225, 288
Fnu4HI GCNGC 2 cut(s) 479, 482
Fsp4HI GCNGC 2 cut(s) 479, 482
FspBI CTAG 4 cut(s) 163, 328, 347, 515
FspI TGCGCA 1 cut(s) 392
GlaI GCGC 3 cut(s) 144, 186, 392
GluI GCNGC 2 cut(s) 479, 482
HaeII RGCGCY 1 cut(s) 188
HgaI GACGC 1 cut(s) 423
HhaI GCGC 3 cut(s) 145, 187, 393
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 229, 292
Hin6I GCGC 3 cut(s) 143, 185, 391
HinP1I GCGC 3 cut(s) 143, 185, 391
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 1 cut(s) 150
HphI GGTGA 3 cut(s) 56, 115, 159
Hpy188I TCNGA 4 cut(s) 46, 311, 549, 604
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 124, 285
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 4 cut(s) 98, 134, 195, 339
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 140, 431
HpyF3I CTNAG 3 cut(s) 230, 503, 546
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 229, 292
HspAI GCGC 3 cut(s) 143, 185, 391
KasI GGCGCC 1 cut(s) 184
LguI GCTCTTC 1 cut(s) 432
LpnPI CCDG 6 cut(s) 80, 106, 356, 507, 515, 593
Lsp1109I GCAGC 2 cut(s) 468, 490
LweI GCATC 2 cut(s) 143, 432
MaeI CTAG 4 cut(s) 163, 328, 347, 515
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 3 cut(s) 103, 156, 197
MboII GAAGA 5 cut(s) 304, 326, 419, 471, 588
MluCI AATT 1 cut(s) 590
Mly113I GGCGCC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 7 cut(s) 24, 33, 66, 94, 198, 254, 375
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 2 cut(s) 109, 593
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 481
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 83, 140, 431
NarI GGCGCC 1 cut(s) 185
NheI GCTAGC 1 cut(s) 327
NlaIII CATG 2 cut(s) 229, 292
NlaIV GGNNCC 2 cut(s) 54, 186
NmuCI GTSAC 2 cut(s) 103, 156
NsbI TGCGCA 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 229
NspV TTCGAA 1 cut(s) 127
PaeI GCATGC 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 2 cut(s) 480, 483
PluTI GGCGCC 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 54, 186
PstNI CAGNNNCTG 2 cut(s) 445, 481
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 4 cut(s) 91, 265, 287, 520
RsaNI GTAC 4 cut(s) 90, 264, 286, 519
RseI CAYNNNNRTG 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 109, 593
SatI GCNGC 2 cut(s) 479, 482
SfaNI GCATC 2 cut(s) 143, 432
SfoI GGCGCC 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 346
SphI GCATGC 1 cut(s) 229
Sse9I AATT 1 cut(s) 590
SsiI CCGC 2 cut(s) 145, 484
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 4 cut(s) 163, 328, 347, 515
TaaI ACNGT 2 cut(s) 124, 285
TaiI ACGT 1 cut(s) 326
TaqI TCGA 2 cut(s) 127, 137
TasI AATT 1 cut(s) 590
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 2 cut(s) 109, 593
Tru9I TTAA 2 cut(s) 109, 593
TscAI CASTG 3 cut(s) 100, 400, 511
TseFI GTSAC 2 cut(s) 103, 156
TseI GCWGC 2 cut(s) 478, 481
Tsp45I GTSAC 2 cut(s) 103, 156
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 3 cut(s) 100, 400, 511
Van91I CCANNNNNTGG 1 cut(s) 73
XceI RCATGY 1 cut(s) 229
XspI CTAG 4 cut(s) 163, 328, 347, 515
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.