Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Forward (+)

11622810 .. 11629737

Gene Structure 6928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12860.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATGTCTCCAAGGCCAATTTCTGAAGATCGAGGAGGATCTCCCCAACATTTCAGGCACACCCCTTTGCAAGTAATCCATATTGTCGGAAATTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGGTACTTGTCTCAGACGGGGGCTTCGGTAGTACTTTTTCTCTTCACTTGTCTGATCCCAGCATCCATCCTATTTCTAATTTTGCAAAAGCCTTGGAAGGGCAGGCCGCTCACAAATACACAGGTGGTTCCTTCTATTATAAATGGTGGTATAACAGCTCTGTACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTTAGAGCTATATTGGCAGAGTATTCTGGTGCTATCCTTGGAGTACTCTCTGCAGTATTGTATGGGCGGAAGGGCCACGCTTGGAAAAAGATAGGTGGGCTTATTGCAATGGTGGCATCTTTCTACTTCTTATCTCAAGGGTGGGCCACAGAAACATACTCTCCATTCTCATTTAAAGATAACCTGGACGCTGAGGTTCAGCCAGAACAGGTGTTAGGTATGAAAGAGATGGCAATTCCAATCTTTGCTGGAATCTTATCAGCATTGAGGAGGGTGATTGCACGGCGTGTTTCATTGAAGAATCAACTTAAAAGACGACTTCATGCTCTAACTGTTGCCTCTGCGACATGCTTCATGTTTCCTGTTGCCATGTGGGACATAATCATAGGATCACCTTCTAGTAGCAGCGAGAAGATGCCATTCTCTACTTGGGCTTTTCTAAGCACCATTTTTTTTGGAGTTATCTTGATATTCTATGTTGATAGTATCGCGGAAGAGAGATTACACATGGTCTTCTCTTCTCCAAAGCATTTAATGGTAGCTGGAGGATGCATTATCGTGATGGAAATGGTGTACAAATTGGACTTTTCTCTTCCTGGTTTCCTAATTTGCTGCATAGTTTTGGGCTTTGGGATATACGAAGCAACTTCTTTGGAGCGTGGTAGAAAAGATTCTTTCCAAAAGCATGATTCCTCAGATGGGATTTTGGGTGATGATATGCAAATGTCTGCACTTCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

39.64

Weight (kDa)

9.34

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	821
AciI	CCGC	3 cut(s)	233, 397, 821
AclWI	GGATC	3 cut(s)	46, 175, 727
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	6 cut(s)	125, 131, 159, 290, 375, 905
AfiI	CCNNNNNNNGG	3 cut(s)	126, 224, 1029
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	2 cut(s)	513, 925
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	284, 338, 872
AluI	AGCT	3 cut(s)	284, 338, 872
Alw26I	GTCTC	2 cut(s)	12, 141
AlwI	GGATC	3 cut(s)	46, 175, 727
AoxI	GGCC	5 cut(s)	14, 230, 310, 403, 474
ApeKI	GCWGC	2 cut(s)	735, 942
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AsiGI	ACCGGT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	1000
AspS9I	GGNCC	3 cut(s)	326, 403, 474
AsuHPI	GGTGA	3 cut(s)	616, 714, 1052
AvaII	GGWCC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	816, 848
BbsI	GAAGAC	1 cut(s)	835
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	2 cut(s)	747, 929
BccI	CCATC	4 cut(s)	200, 553, 886, 1022
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	2 cut(s)	515, 927
BcoDI	GTCTC	2 cut(s)	12, 141
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	3 cut(s)	233, 736, 943
BlsI	GCNGC	3 cut(s)	234, 737, 944
BmcAI	AGTACT	2 cut(s)	159, 375
Bme1390I	CCNGG	2 cut(s)	515, 927
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	326, 403, 474
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	515, 927
BmsI	GCATC	4 cut(s)	197, 455, 735, 869
BpiI	GAAGAC	1 cut(s)	835
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	118, 450
BsaJI	CCNNGG	3 cut(s)	11, 218, 367
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 224, 1029
Bse118I	RCCGGY	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	515, 927
BseDI	CCNNGG	3 cut(s)	11, 218, 367
BseGI	GGATG	3 cut(s)	188, 192, 884
BseLI	CCNNNNNNNGG	3 cut(s)	126, 224, 1029
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	152, 513, 1038
BseRI	GAGGAG	2 cut(s)	48, 613
BseXI	GCAGC	2 cut(s)	747, 929
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	1044
Bsh1236I	CGCG	1 cut(s)	821
BshFI	GGCC	5 cut(s)	16, 232, 312, 405, 476
BshTI	ACCGGT	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	3 cut(s)	126, 224, 1029
BsmAI	GTCTC	2 cut(s)	12, 141
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	5 cut(s)	16, 232, 312, 405, 476
Bsp1407I	TGTACA	1 cut(s)	903
Bsp143I	GATC	4 cut(s)	28, 38, 180, 719
BspACI	CCGC	3 cut(s)	233, 397, 821
BspANI	GGCC	5 cut(s)	16, 232, 312, 405, 476
BspCNI	CTCAG	3 cut(s)	151, 514, 1037
BspFNI	CGCG	1 cut(s)	821
BspLI	GGNNCC	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	3 cut(s)	46, 175, 727
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	903
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	11, 218, 367
BssMI	GATC	4 cut(s)	28, 38, 180, 719
BssT1I	CCWWGG	3 cut(s)	11, 218, 367
Bst2UI	CCWGG	2 cut(s)	515, 927
Bst4CI	ACNGT	1 cut(s)	664
Bst6I	CTCTTC	4 cut(s)	173, 819, 853, 927
BstAUI	TGTACA	1 cut(s)	903
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	5 cut(s)	138, 332, 522, 770, 1024
BstF5I	GGATG	3 cut(s)	188, 192, 884
BstFNI	CGCG	1 cut(s)	821
BstKTI	GATC	4 cut(s)	31, 41, 183, 722
BstMAI	GTCTC	2 cut(s)	12, 141
BstMBI	GATC	4 cut(s)	28, 38, 180, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 443
BstNI	CCWGG	2 cut(s)	515, 927
BstNSI	RCATGY	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	513, 925
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	2 cut(s)	747, 929
BstV2I	GAAGAC	1 cut(s)	835
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	5 cut(s)	16, 232, 312, 405, 476
BtsCI	GGATG	3 cut(s)	188, 192, 884
Cac8I	GCNNGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	326, 403, 474
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	6 cut(s)	124, 130, 158, 289, 374, 904
CspAI	ACCGGT	1 cut(s)	126
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	7 cut(s)	321, 653, 678, 685, 700, 838, 1016
CviQI	GTAC	6 cut(s)	124, 130, 158, 289, 374, 904
DdeI	CTNAG	5 cut(s)	138, 332, 522, 770, 1024
DpnI	GATC	4 cut(s)	30, 40, 182, 721
DpnII	GATC	4 cut(s)	28, 38, 180, 719
DraI	TTTAAA	1 cut(s)	505
DraIII	CACNNNGTG	1 cut(s)	617
Eam1104I	CTCTTC	4 cut(s)	173, 819, 853, 927
EarI	CTCTTC	4 cut(s)	173, 819, 853, 927
EciI	GGCGGA	1 cut(s)	412
Eco130I	CCWWGG	3 cut(s)	11, 218, 367
Eco147I	AGGCCT	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	513, 925
EcoT14I	CCWWGG	3 cut(s)	11, 218, 367
EcoT22I	ATGCAT	1 cut(s)	884
ErhI	CCWWGG	3 cut(s)	11, 218, 367
FaeI	CATG	7 cut(s)	324, 656, 681, 688, 703, 841, 1019
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	7 cut(s)	320, 652, 677, 684, 699, 837, 1015
Fnu4HI	GCNGC	3 cut(s)	233, 736, 943
FokI	GGATG	3 cut(s)	175, 179, 891
Fsp4HI	GCNGC	3 cut(s)	233, 736, 943
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	3 cut(s)	233, 736, 943
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	5 cut(s)	16, 232, 312, 405, 476
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	527
Hin1II	CATG	7 cut(s)	324, 656, 681, 688, 703, 841, 1019
HinfI	GANTC	4 cut(s)	582, 631, 1001, 1019
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	3 cut(s)	616, 714, 1052
Hpy166II	GTNNAC	2 cut(s)	326, 904
Hpy188I	TCNGA	5 cut(s)	25, 89, 141, 180, 1027
Hpy188III	TCNNGA	3 cut(s)	97, 796, 889
Hpy8I	GTNNAC	2 cut(s)	326, 904
HpyAV	CCTTC	4 cut(s)	217, 267, 394, 735
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4V	TGCA	9 cut(s)	70, 211, 383, 437, 611, 882, 945, 1051, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 443
HpyF3I	CTNAG	5 cut(s)	138, 332, 522, 770, 1024
Hsp92II	CATG	7 cut(s)	324, 656, 681, 688, 703, 841, 1019
Kzo9I	GATC	4 cut(s)	28, 38, 180, 719
LmnI	GCTCC	1 cut(s)	985
Lsp1109I	GCAGC	2 cut(s)	747, 929
LweI	GCATC	4 cut(s)	197, 455, 735, 869
MaeI	CTAG	1 cut(s)	729
MalI	GATC	4 cut(s)	30, 40, 182, 721
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	4 cut(s)	28, 38, 180, 719
MboII	GAAGA	8 cut(s)	38, 160, 640, 754, 835, 836, 840, 914
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	7 cut(s)	18, 91, 111, 204, 564, 908, 936
MmeI	TCCRAC	1 cut(s)	67
Mph1103I	ATGCAT	1 cut(s)	884
MroXI	GAANNNNTTC	1 cut(s)	1000
MseI	TTAA	3 cut(s)	504, 639, 863
MslI	CAYNNNNRTG	1 cut(s)	887
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	515, 927
MvaI	CCWGG	2 cut(s)	515, 927
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	2 cut(s)	344, 443
NdeII	GATC	4 cut(s)	28, 38, 180, 719
NlaIII	CATG	7 cut(s)	324, 656, 681, 688, 703, 841, 1019
NlaIV	GGNNCC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	884
NspI	RCATGY	1 cut(s)	681
PceI	AGGCCT	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	1000
PfeI	GAWTC	4 cut(s)	582, 631, 1001, 1019
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	234, 737, 944
PsiI	TTATAA	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	513, 925
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	2 cut(s)	513, 925
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	3 cut(s)	326, 403, 474
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	6 cut(s)	125, 131, 159, 290, 375, 905
RsaNI	GTAC	6 cut(s)	124, 130, 158, 289, 374, 904
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	3 cut(s)	504, 639, 863
SatI	GCNGC	3 cut(s)	233, 736, 943
Sau3AI	GATC	4 cut(s)	28, 38, 180, 719
Sau96I	GGNCC	3 cut(s)	326, 403, 474
ScaI	AGTACT	2 cut(s)	159, 375
ScrFI	CCNGG	2 cut(s)	515, 927
SfaNI	GCATC	4 cut(s)	197, 455, 735, 869
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	97, 465
SmoI	CTYRAG	2 cut(s)	97, 465
Sse9I	AATT	7 cut(s)	18, 91, 111, 204, 564, 908, 936
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	3 cut(s)	233, 397, 821
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	513, 925
StyI	CCWWGG	3 cut(s)	11, 218, 367
TaaI	ACNGT	1 cut(s)	664
TaqI	TCGA	1 cut(s)	31
TasI	AATT	7 cut(s)	18, 91, 111, 204, 564, 908, 936
TatI	WGTACW	4 cut(s)	157, 288, 373, 903
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	4 cut(s)	582, 631, 1001, 1019
Tru1I	TTAA	3 cut(s)	504, 639, 863
Tru9I	TTAA	3 cut(s)	504, 639, 863
TseI	GCWGC	2 cut(s)	735, 942
TspDTI	ATGAA	4 cut(s)	566, 612, 641, 673
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	756
XmnI	GAANNNNTTC	1 cut(s)	1000
XspI	CTAG	1 cut(s)	729
ZrmI	AGTACT	2 cut(s)	159, 375
Zsp2I	ATGCAT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.