Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Reverse (-)

23863642 .. 23868438

Gene Structure 4797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAACTTACCTTCAAACAGGCACACTCCTTTGCAAGTAATCCATATTGTCGGAAATTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGTTACTTGTCTCAGACGGGGGCTTCGGTTGTACTATTTCTCTTCATTTGTCTGATCCCAGCATCCATCCTATTTCTAATTTTGCAGAAGCCTTGGAAGGGCAGGCCACTCTCAAATACACAGGTGGTTCCTTCTATTATAAATGGTGGTATAACAGCTCTGTACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTTAGAGCTATAATGGCAGAGTATTCTGGTGCTATCCTTGGAGTACTCTCTGCAGTATTATATGGGCGGAAGGGTCACGCTTGGAAAAAGGTTGAATTCTCAGATGCTTTATTGACTTTTATATCTTCAAGCTTTAAGATGTTGGATTCTTGTAATCTCAGATGGATGTTTCTTCATTTTTTACCAGATAGGCGGGCTTATTGCAATGATAACGTTGATGCTGAGGTTCAGCCAGAACAGGTGTTAGGTATGAAAGAGATGGCAATTCCAATCTTTGCAGGAATCTTATCAGCATTGAGGAGGGTGATTGCAAGGCGTGTTTCATTGAAGAATCAACTTAAAAGGCGACTTCATGCTCTAACTATTGCCTCTGCAACATGCTTCATGTTTCCTATTGCCATGTGGGACGTAATCATAGGATCAGCTTCTAGCAGCAGCAATAAGATGCCATTCTCTACTTGGGCTTTTCTAAGCACCATTCTTTTTGGAGTTATCTTGATATTCTATGTTGATAGTATCGCGGAAGAGAGATTACACATGGTTTTCTCTTCTCCAAAGCATTTGATGGTAGCTGGAGGATGCATAATCGTGATGGAAATGGTGTACAAATTGGACTTTTCTCTTCCAGGATTCCTAATTTGCTGCATAGTTTTAGGCTTTGGGATATACGAAGCAACTTCTTTGGAACGTGGTAGAAAAGATTCTTTCCAAAAGCCTGATTCATCGGATGGGATTTTGGGAGATGAAATTCAGATGTCTGCACTTCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

39.64

Weight (kDa)

9.33

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccII	CGCG	1 cut(s)	815
AciI	CCGC	3 cut(s)	361, 487, 815
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	2 cut(s)	139, 721
AcsI	RAATTY	3 cut(s)	55, 389, 1041
AfaI	GTAC	5 cut(s)	89, 123, 254, 339, 899
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	15, 389, 423, 622
AjnI	CCWGG	1 cut(s)	919
AluBI	AGCT	5 cut(s)	248, 302, 426, 719, 866
AluI	AGCT	5 cut(s)	248, 302, 426, 719, 866
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	139, 721
AoxI	GGCC	2 cut(s)	194, 274
ApeKI	GCWGC	3 cut(s)	726, 729, 936
ApoI	RAATTY	3 cut(s)	55, 389, 1041
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
Asp700I	GAANNNNTTC	1 cut(s)	994
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	290
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	738, 741, 923
BccI	CCATC	6 cut(s)	164, 450, 547, 853, 880, 1016
BciT130I	CCWGG	1 cut(s)	921
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	3 cut(s)	727, 730, 937
BlsI	GCNGC	3 cut(s)	728, 731, 938
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	921
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	921
BmsI	GCATC	5 cut(s)	161, 388, 502, 729, 863
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	182, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	921
BseDI	CCNNGG	2 cut(s)	182, 331
BseGI	GGATG	5 cut(s)	152, 156, 465, 878, 1027
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	4 cut(s)	116, 408, 466, 507
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	738, 741, 923
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	1038
Bsh1236I	CGCG	1 cut(s)	815
BshFI	GGCC	2 cut(s)	196, 276
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	196, 276
Bsp1407I	TGTACA	1 cut(s)	897
Bsp143I	GATC	2 cut(s)	144, 713
BspACI	CCGC	3 cut(s)	361, 487, 815
BspANI	GGCC	2 cut(s)	196, 276
BspCNI	CTCAG	4 cut(s)	115, 407, 465, 508
BspFNI	CGCG	1 cut(s)	815
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	139, 721
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	897
BssECI	CCNNGG	2 cut(s)	182, 331
BssMI	GATC	2 cut(s)	144, 713
BssT1I	CCWWGG	2 cut(s)	182, 331
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	4 cut(s)	137, 813, 847, 921
BstAUI	TGTACA	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	194, 489
BstDEI	CTNAG	6 cut(s)	102, 296, 394, 452, 516, 764
BstF5I	GGATG	5 cut(s)	152, 156, 465, 878, 1027
BstFNI	CGCG	1 cut(s)	815
BstKTI	GATC	2 cut(s)	147, 716
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	144, 713
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	919
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	3 cut(s)	738, 741, 923
BsuRI	GGCC	2 cut(s)	196, 276
BtsCI	GGATG	5 cut(s)	152, 156, 465, 878, 1027
Cac8I	GCNNGC	2 cut(s)	194, 489
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	5 cut(s)	88, 122, 253, 338, 898
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	6 cut(s)	285, 647, 672, 679, 694, 832
CviQI	GTAC	5 cut(s)	88, 122, 253, 338, 898
DdeI	CTNAG	6 cut(s)	102, 296, 394, 452, 516, 764
DpnI	GATC	2 cut(s)	146, 715
DpnII	GATC	2 cut(s)	144, 713
Eam1104I	CTCTTC	4 cut(s)	137, 813, 847, 921
EarI	CTCTTC	4 cut(s)	137, 813, 847, 921
EciI	GGCGGA	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	182, 331
Eco147I	AGGCCT	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	919
EcoT14I	CCWWGG	2 cut(s)	182, 331
EcoT22I	ATGCAT	1 cut(s)	878
ErhI	CCWWGG	2 cut(s)	182, 331
FaeI	CATG	6 cut(s)	288, 650, 675, 682, 697, 835
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	6 cut(s)	284, 646, 671, 678, 693, 831
FauI	CCCGC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	727, 730, 937
FokI	GGATG	5 cut(s)	139, 143, 472, 885, 1034
Fsp4HI	GCNGC	3 cut(s)	727, 730, 937
FspBI	CTAG	1 cut(s)	723
GluI	GCNGC	3 cut(s)	727, 730, 937
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	2 cut(s)	196, 276
Hin1II	CATG	6 cut(s)	288, 650, 675, 682, 697, 835
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	6 cut(s)	440, 576, 625, 924, 995, 1013
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	2 cut(s)	290, 898
Hpy188I	TCNGA	7 cut(s)	53, 105, 144, 397, 455, 1021, 1047
Hpy188III	TCNNGA	3 cut(s)	61, 790, 883
Hpy8I	GTNNAC	2 cut(s)	290, 898
HpyAV	CCTTC	4 cut(s)	21, 181, 231, 358
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	3 cut(s)	507, 702, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	6 cut(s)	102, 296, 394, 452, 516, 764
HpySE526I	ACGT	3 cut(s)	507, 702, 982
Hsp92II	CATG	6 cut(s)	288, 650, 675, 682, 697, 835
Kzo9I	GATC	2 cut(s)	144, 713
Lsp1109I	GCAGC	3 cut(s)	738, 741, 923
LweI	GCATC	5 cut(s)	161, 388, 502, 729, 863
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	3 cut(s)	507, 702, 982
MaeIII	GTNAC	2 cut(s)	92, 368
MalI	GATC	2 cut(s)	146, 715
MboI	GATC	2 cut(s)	144, 713
MboII	GAAGA	7 cut(s)	124, 411, 458, 634, 830, 834, 908
MluCI	AATT	8 cut(s)	55, 75, 168, 389, 558, 902, 930, 1041
MmeI	TCCRAC	2 cut(s)	31, 417
MnlI	CCTC	7 cut(s)	287, 303, 511, 585, 588, 673, 863
Mph1103I	ATGCAT	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	994
MseI	TTAA	2 cut(s)	429, 633
MslI	CAYNNNNRTG	1 cut(s)	881
MspR9I	CCNGG	1 cut(s)	921
MvaI	CCWGG	1 cut(s)	921
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	144, 713
NlaIII	CATG	6 cut(s)	288, 650, 675, 682, 697, 835
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	878
NspI	RCATGY	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	994
PfeI	GAWTC	6 cut(s)	440, 576, 625, 924, 995, 1013
PfoI	TCCNGGA	1 cut(s)	919
PkrI	GCNGC	3 cut(s)	728, 731, 938
PsiI	TTATAA	1 cut(s)	230
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	919
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	919
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	5 cut(s)	89, 123, 254, 339, 899
RsaNI	GTAC	5 cut(s)	88, 122, 253, 338, 898
RseI	CAYNNNNRTG	1 cut(s)	881
SaqAI	TTAA	2 cut(s)	429, 633
SatI	GCNGC	3 cut(s)	727, 730, 937
Sau3AI	GATC	2 cut(s)	144, 713
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	921
SfaNI	GCATC	5 cut(s)	161, 388, 502, 729, 863
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	8 cut(s)	55, 75, 168, 389, 558, 902, 930, 1041
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	361, 487, 815
SspMI	CTAG	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	919
StyI	CCWWGG	2 cut(s)	182, 331
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	3 cut(s)	510, 705, 985
TasI	AATT	8 cut(s)	55, 75, 168, 389, 558, 902, 930, 1041
TatI	WGTACW	4 cut(s)	121, 252, 337, 897
TfiI	GAWTC	6 cut(s)	440, 576, 625, 924, 995, 1013
Tru1I	TTAA	2 cut(s)	429, 633
Tru9I	TTAA	2 cut(s)	429, 633
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	726, 729, 936
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	9 cut(s)	17, 124, 458, 560, 606, 635, 667, 1005, 1053
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	55, 389, 1041
XceI	RCATGY	1 cut(s)	675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	994
XspI	CTAG	1 cut(s)	723
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.