Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Forward (+)

20735157 .. 20740639

Gene Structure 5483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGTCCCCGAGACAAATTCCTGAAGATCGAGGATCTTCTCCTCATTTCAGGCACACACCCGTGCAAATAATCCATATTATCGGCAATTTCTTAAGAATATGGTCAATTTACTCCCTGTATCGCTACTTATCTGAAACGGGGGCTTCAGTTGTACTTTTCCTCTTCACTTGTCTGATCCCAGCATCCATCCTATTTCTAATTTTGCAAAAGCCTTGGAAGGGCAGGCCACTCTCAAACACACAGGTAGTGCCTTCTATAATAAATGGTGGCATAACAGCTTTATATTTTGTTTTATGGGGAAAAGGCCTCAAATCATGTGGACCTCTAAGAGCTATATTAGCGGAGTATTCTGGTGCTGTCCTTGGGGTACTGTCTGGAGTATTGTATGGGCGCAAGGGCCACATTTGGAAAAAGGTAGGTGGGCTTATTGCAATGGTGGCATCTTTCTACTTCTTATCTCAAGGGTGGGCTATGGAATCATATTCTCCATTCTCATTTAAAGATAGCCTCGATGATGAGGTTCAGACAGAACAACTGTTGGGTATAAAAGAGATGGTACTTCCAATCTTTGCTGGAATCTTATCAGCACTGAGGAGGGTGATTGCGCGGCGTGTTTCACTCAAGAATCAACTTAAAAGGCGACTTAATGCAATAACTATTGCTTCTGCAACATGTTTCCTGTTTCCTGTGGCCATGTGGGACATGATCATAGGATCACCTTCAAGTACCAGCGATAAGGTGCCATTTTCCACTTGGGCTTTTTTGAGCACCATTCTTTTTGGAGTAATCTTGATATTCTATGTTGATAGTATCGCAGAAGAGAGATTACACATGGTTTTCTCTTCTCCAAGGCATTTAATGGTAGCTGGAGGATGCATAATCGTCATGGAGATCGTGTACAATATGGACTTTTCTCTTCCAGGCTTCCTAATTTGCTGCTTAATTTTGGGCTTTGGGATATATGAGGCAACTTCTTTGGAACGTGGTAGAAAAGATTCTTTTCAAACTTCAGATCTATCAAATGGGATGTTGGGGGACGAAACTCAGATGTCTTCACTTCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

39.55

Weight (kDa)

9.1

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	742
AccII	CGCG	1 cut(s)	610
AciI	CCGC	2 cut(s)	344, 610
AclWI	GGATC	3 cut(s)	43, 172, 724
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	3 cut(s)	45, 132, 996
AfaI	GTAC	5 cut(s)	156, 372, 561, 730, 902
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	674
AgsI	TTSAA	2 cut(s)	726, 1007
AjnI	CCWGG	1 cut(s)	922
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	281, 335, 869
AluI	AGCT	3 cut(s)	281, 335, 869
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	3 cut(s)	43, 172, 724
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	4 cut(s)	227, 307, 400, 693
ApeKI	GCWGC	1 cut(s)	939
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	997
AspLEI	GCGC	2 cut(s)	396, 610
AspS9I	GGNCC	2 cut(s)	323, 400
AsuHPI	GGTGA	2 cut(s)	613, 711
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	742
BarI	GAAGNNNNNNTAC	2 cut(s)	813, 845
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	1 cut(s)	926
BccI	CCATC	2 cut(s)	197, 550
BciT130I	CCWGG	1 cut(s)	924
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	94
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	2 cut(s)	611, 940
BlsI	GCNGC	2 cut(s)	612, 941
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	323, 400
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	3 cut(s)	194, 452, 866
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	2 cut(s)	399, 891
BpuEI	CTTGAG	2 cut(s)	447, 608
BsaJI	CCNNGG	3 cut(s)	215, 364, 851
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	3 cut(s)	215, 364, 851
BseGI	GGATG	4 cut(s)	185, 189, 881, 1035
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	584, 1061
BseRI	GAGGAG	2 cut(s)	33, 610
BseXI	GCAGC	1 cut(s)	926
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	4 cut(s)	229, 309, 402, 695
BshNI	GGYRCC	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	10
BslFI	GGGAC	2 cut(s)	716, 1052
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	2 cut(s)	716, 1052
BsnI	GGCC	4 cut(s)	229, 309, 402, 695
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
BspACI	CCGC	2 cut(s)	344, 610
BspANI	GGCC	4 cut(s)	229, 309, 402, 695
BspCNI	CTCAG	2 cut(s)	585, 1060
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	3 cut(s)	43, 172, 724
BspT107I	GGYRCC	1 cut(s)	742
BspTI	CTTAAG	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	900
BssECI	CCNNGG	3 cut(s)	215, 364, 851
BssMI	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
BssT1I	CCWWGG	3 cut(s)	215, 364, 851
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	2 cut(s)	375, 540
Bst6I	CTCTTC	4 cut(s)	170, 816, 850, 924
BstAFI	CTTAAG	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	3 cut(s)	329, 593, 1047
BstF5I	GGATG	4 cut(s)	185, 189, 881, 1035
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	2 cut(s)	396, 610
BstKTI	GATC	7 cut(s)	31, 38, 180, 711, 719, 897, 1018
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 440
BstNI	CCWGG	1 cut(s)	924
BstNSI	RCATGY	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	922
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	1 cut(s)	926
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	2 cut(s)	35, 1015
BstYI	RGATCY	2 cut(s)	35, 1015
BsuRI	GGCC	4 cut(s)	229, 309, 402, 695
BtsCI	GGATG	4 cut(s)	185, 189, 881, 1035
BtsIMutI	CAGTG	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	2 cut(s)	396, 610
Cfr13I	GGNCC	2 cut(s)	323, 400
Csp6I	GTAC	5 cut(s)	155, 371, 560, 729, 901
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	6 cut(s)	318, 675, 697, 706, 835, 889
CviQI	GTAC	5 cut(s)	155, 371, 560, 729, 901
DdeI	CTNAG	3 cut(s)	329, 593, 1047
DpnI	GATC	7 cut(s)	30, 37, 179, 710, 718, 896, 1017
DpnII	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
DraI	TTTAAA	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	4 cut(s)	170, 816, 850, 924
EarI	CTCTTC	4 cut(s)	170, 816, 850, 924
Eco130I	CCWWGG	3 cut(s)	215, 364, 851
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	3 cut(s)	45, 132, 996
Eco88I	CYCGRG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	922
EcoT14I	CCWWGG	3 cut(s)	215, 364, 851
EcoT22I	ATGCAT	1 cut(s)	881
ErhI	CCWWGG	3 cut(s)	215, 364, 851
FaeI	CATG	6 cut(s)	321, 678, 700, 709, 838, 892
FaqI	GGGAC	2 cut(s)	716, 1052
FatI	CATG	6 cut(s)	317, 674, 696, 705, 834, 888
FbaI	TGATCA	1 cut(s)	708
Fnu4HI	GCNGC	2 cut(s)	611, 940
FokI	GGATG	4 cut(s)	172, 176, 888, 1042
Fsp4HI	GCNGC	2 cut(s)	611, 940
GlaI	GCGC	2 cut(s)	395, 609
GluI	GCNGC	2 cut(s)	611, 940
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	2 cut(s)	399, 891
HaeIII	GGCC	4 cut(s)	229, 309, 402, 695
HhaI	GCGC	2 cut(s)	396, 610
Hin1II	CATG	6 cut(s)	321, 678, 700, 709, 838, 892
Hin6I	GCGC	2 cut(s)	394, 608
HinP1I	GCGC	2 cut(s)	394, 608
HinfI	GANTC	4 cut(s)	479, 579, 628, 998
HphI	GGTGA	2 cut(s)	613, 711
Hpy166II	GTNNAC	2 cut(s)	323, 901
Hpy188I	TCNGA	5 cut(s)	136, 177, 528, 1015, 1050
Hpy188III	TCNNGA	4 cut(s)	23, 378, 625, 793
Hpy8I	GTNNAC	2 cut(s)	323, 901
HpyAV	CCTTC	3 cut(s)	214, 264, 732
HpyCH4III	ACNGT	2 cut(s)	375, 540
HpyCH4IV	ACGT	1 cut(s)	985
HpyCH4V	TGCA	6 cut(s)	67, 208, 434, 653, 671, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 440
HpyF3I	CTNAG	3 cut(s)	329, 593, 1047
HpySE526I	ACGT	1 cut(s)	985
Hsp92II	CATG	6 cut(s)	321, 678, 700, 709, 838, 892
HspAI	GCGC	2 cut(s)	394, 608
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
Lsp1109I	GCAGC	1 cut(s)	926
LweI	GCATC	3 cut(s)	194, 452, 866
MaeII	ACGT	1 cut(s)	985
MalI	GATC	7 cut(s)	30, 37, 179, 710, 718, 896, 1017
MboI	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
MboII	GAAGA	7 cut(s)	30, 38, 157, 833, 837, 911, 1047
MflI	RGATCY	2 cut(s)	35, 1015
MhlI	GDGCHC	1 cut(s)	773
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	6 cut(s)	18, 88, 108, 201, 933, 945
MluNI	TGGCCA	1 cut(s)	695
Mox20I	TGGCCA	1 cut(s)	695
Mph1103I	ATGCAT	1 cut(s)	881
MroXI	GAANNNNTTC	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	6 cut(s)	95, 501, 636, 648, 860, 944
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	924
MvaI	CCWGG	1 cut(s)	924
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	2 cut(s)	341, 440
NdeII	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
NlaIII	CATG	6 cut(s)	321, 678, 700, 709, 838, 892
NlaIV	GGNNCC	1 cut(s)	744
NsiI	ATGCAT	1 cut(s)	881
NspI	RCATGY	1 cut(s)	678
OliI	CACNNNNGTG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	309
PciI	ACATGT	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	997
PfeI	GAWTC	4 cut(s)	479, 579, 628, 998
PkrI	GCNGC	2 cut(s)	612, 941
PscI	ACATGT	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	922
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	2 cut(s)	323, 400
PsuI	RGATCY	2 cut(s)	35, 1015
RsaI	GTAC	5 cut(s)	156, 372, 561, 730, 902
RsaNI	GTAC	5 cut(s)	155, 371, 560, 729, 901
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	6 cut(s)	95, 501, 636, 648, 860, 944
SatI	GCNGC	2 cut(s)	611, 940
Sau3AI	GATC	7 cut(s)	28, 35, 177, 708, 716, 894, 1015
Sau96I	GGNCC	2 cut(s)	323, 400
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	3 cut(s)	194, 452, 866
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	3 cut(s)	94, 462, 623
SmoI	CTYRAG	3 cut(s)	94, 462, 623
Sse9I	AATT	6 cut(s)	18, 88, 108, 201, 933, 945
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	344, 610
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	922
StyI	CCWWGG	3 cut(s)	215, 364, 851
TaaI	ACNGT	2 cut(s)	375, 540
TaiI	ACGT	1 cut(s)	988
TaqI	TCGA	2 cut(s)	31, 513
TasI	AATT	6 cut(s)	18, 88, 108, 201, 933, 945
TatI	WGTACW	2 cut(s)	154, 900
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	4 cut(s)	479, 579, 628, 998
Tru1I	TTAA	6 cut(s)	95, 501, 636, 648, 860, 944
Tru9I	TTAA	6 cut(s)	95, 501, 636, 648, 860, 944
TscAI	CASTG	1 cut(s)	597
TseI	GCWGC	1 cut(s)	939
TspRI	CASTG	1 cut(s)	597
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	997
Zsp2I	ATGCAT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.