Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Reverse (-)

18724521 .. 18729490

Gene Structure 4970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1195600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGTCTCCGAGGCCAGTTCCTGAAGATCGAGGAAGATCTTCTCCCCATTTCAGGCAAACACCCTTTCAAATAATCCATATTATTGGAAACTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGCTACTTGTCTGAAACTGGAGCTTCGGTTGTACTTTTTCTGTTCACCTGCCTGATCCCAGCATCCATCCTATTTCTAATTATGCAAAAGCCTTGGAAGGGCAGGCCGCTCTCAAATACACAGGTGGTACCTTCTGTAATAAATGGAGGCATAACGGCCTTATACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTAAGAGCTATATTAGCAGAGTATTCTGGTGCTGTCCTTGGAGTGCTGTCTGGAGTATTATATGGACGCAGGGGCCACGTTTGGAAAAAGGTAGGTGGGCTTATTGCAATGGTGGCGTCTTTCTACTTCTTATCTCAAGGCCTTGATGACGAGGTTCAGATGGAGCAAGTGTTGGGTATAAAAGAGATGGCACTTCCAATCTTTGCTGGCATCTTATCAGCATTGAGGAGGGTGATTGCACGGCGTGTTTCACTCAAGAATCAACTTAAAAGGCGACTTAATGCAATAACTATTGCCTCTGCAACATGTTTCCTGTTCCCTGTGGCCATGTGGGACATGATCATAGGATCACCATCAAGTACCAGTGATAAGGTGCCATTCTCGACTTGGGCTTTTTTTAGCACCATTCTCTTTGGAGTAATCTTGATATTCTATGTTGATAGTATCGCGGAAGAGAGGTTGCACATGGTTTTCTCTTCTCCAAGACATTTAATGGTAGCTGGAGGATGCATAATCGTTTTGGAGATTGTGTACAAAATGGACTTTTCTCTTCCAGGCTTTCTAATTTGCTGCTTAATTTTGGGCTTTGGGATATATGAGGCAACTTCTTTGGAACGTGGTAGAAAAGATTCTTTTCAAACTGCAGATTCATCAAATGGGATGCTAGGGGACGAAATTCAGATGTCGTCACTTCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

38.06

Weight (kDa)

9.42

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	2 cut(s)	253, 703
AccBSI	CCGCTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	779
AciI	CCGC	3 cut(s)	127, 233, 779
AclWI	GGATC	2 cut(s)	175, 685
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	1 cut(s)	1005
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	575
AfaI	GTAC	5 cut(s)	125, 159, 255, 691, 863
AfiI	CCNNNNNNNGG	2 cut(s)	54, 224
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	71, 968
AjnI	CCWGG	1 cut(s)	883
AluBI	AGCT	3 cut(s)	149, 338, 830
AluI	AGCT	3 cut(s)	149, 338, 830
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	175, 685
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	7 cut(s)	14, 230, 282, 310, 403, 469, 654
ApeKI	GCWGC	1 cut(s)	900
ApoI	RAATTY	1 cut(s)	1005
Asp700I	GAANNNNTTC	2 cut(s)	40, 958
Asp718I	GGTACC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	326, 403
AsuHPI	GGTGA	3 cut(s)	163, 574, 672
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	656
BanI	GGYRCC	2 cut(s)	253, 703
BbvI	GCAGC	1 cut(s)	887
BccI	CCATC	4 cut(s)	200, 484, 511, 691
BceAI	ACGGC	2 cut(s)	297, 587
BciT130I	CCWGG	1 cut(s)	885
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	995
BfmI	CTRYAG	1 cut(s)	972
BfuAI	ACCTGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	2 cut(s)	233, 901
BlsI	GCNGC	2 cut(s)	234, 902
Bme1390I	CCNGG	1 cut(s)	885
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	326, 403
BmiI	GGNNCC	3 cut(s)	255, 404, 705
BmrFI	CCNGG	1 cut(s)	885
BmsI	GCATC	4 cut(s)	197, 549, 827, 981
BpmI	CTGGAG	3 cut(s)	165, 402, 852
BpuEI	CTTGAG	3 cut(s)	118, 450, 569
BsaBI	GATNNNNATC	1 cut(s)	682
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	11, 218, 367
BsaXI	ACNNNNNCTCC	6 cut(s)	138, 168, 485, 515, 845, 875
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 224
Bse1I	ACTGG	3 cut(s)	17, 148, 693
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	885
BseDI	CCNNGG	3 cut(s)	11, 218, 367
BseGI	GGATG	4 cut(s)	188, 192, 842, 996
BseJI	GATNNNNATC	1 cut(s)	682
BseLI	CCNNNNNNNGG	2 cut(s)	54, 224
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	17, 148, 693
BseRI	GAGGAG	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	887
BseYI	CCCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	7 cut(s)	16, 232, 284, 312, 405, 471, 656
BshNI	GGYRCC	2 cut(s)	253, 703
BslFI	GGGAC	2 cut(s)	677, 1013
BslI	CCNNNNNNNGG	2 cut(s)	54, 224
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	677, 1013
BsnI	GGCC	7 cut(s)	16, 232, 284, 312, 405, 471, 656
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	5 cut(s)	28, 38, 180, 669, 677
BspACI	CCGC	3 cut(s)	127, 233, 779
BspANI	GGCC	7 cut(s)	16, 232, 284, 312, 405, 471, 656
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	3 cut(s)	255, 404, 705
BspMAI	CTGCAG	1 cut(s)	976
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	2 cut(s)	175, 685
BspT107I	GGYRCC	2 cut(s)	253, 703
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	17, 148, 693
BssECI	CCNNGG	3 cut(s)	11, 218, 367
BssMI	GATC	5 cut(s)	28, 38, 180, 669, 677
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	2 cut(s)	218, 367
Bst2UI	CCWGG	1 cut(s)	885
Bst6I	CTCTTC	3 cut(s)	777, 811, 885
BstACI	GRCGYC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	861
BstC8I	GCNNGC	2 cut(s)	230, 538
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	4 cut(s)	188, 192, 842, 996
BstFNI	CGCG	1 cut(s)	779
BstKTI	GATC	5 cut(s)	31, 41, 183, 672, 680
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	5 cut(s)	28, 38, 180, 669, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 443
BstNI	CCWGG	1 cut(s)	885
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	883
BstSFI	CTRYAG	1 cut(s)	972
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	1 cut(s)	887
BstX2I	RGATCY	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	7 cut(s)	16, 232, 284, 312, 405, 471, 656
BtsCI	GGATG	4 cut(s)	188, 192, 842, 996
BtsIMutI	CAGTG	1 cut(s)	700
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	230, 538
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	326, 403
CseI	GACGC	2 cut(s)	405, 435
Csp6I	GTAC	5 cut(s)	124, 158, 254, 690, 862
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	5 cut(s)	321, 636, 658, 667, 796
CviQI	GTAC	5 cut(s)	124, 158, 254, 690, 862
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	5 cut(s)	30, 40, 182, 671, 679
DpnII	GATC	5 cut(s)	28, 38, 180, 669, 677
DraIII	CACNNNGTG	1 cut(s)	575
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	3 cut(s)	777, 811, 885
EarI	CTCTTC	3 cut(s)	777, 811, 885
Eco130I	CCWWGG	2 cut(s)	218, 367
Eco147I	AGGCCT	2 cut(s)	312, 471
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	883
EcoT14I	CCWWGG	2 cut(s)	218, 367
EcoT22I	ATGCAT	1 cut(s)	842
ErhI	CCWWGG	2 cut(s)	218, 367
FaeI	CATG	5 cut(s)	324, 639, 661, 670, 799
FaqI	GGGAC	2 cut(s)	677, 1013
FatI	CATG	5 cut(s)	320, 635, 657, 666, 795
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	2 cut(s)	233, 901
FokI	GGATG	4 cut(s)	175, 179, 849, 1003
Fsp4HI	GCNGC	2 cut(s)	233, 901
FspBI	CTAG	1 cut(s)	995
GluI	GCNGC	2 cut(s)	233, 901
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	3 cut(s)	165, 402, 852
HaeIII	GGCC	7 cut(s)	16, 232, 284, 312, 405, 471, 656
HgaI	GACGC	2 cut(s)	405, 435
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	5 cut(s)	324, 639, 661, 670, 799
HinfI	GANTC	3 cut(s)	589, 959, 977
HphI	GGTGA	3 cut(s)	163, 574, 672
Hpy166II	GTNNAC	3 cut(s)	171, 326, 862
Hpy188I	TCNGA	4 cut(s)	12, 139, 489, 1011
Hpy188III	TCNNGA	6 cut(s)	23, 97, 381, 586, 712, 754
Hpy8I	GTNNAC	3 cut(s)	171, 326, 862
HpyAV	CCTTC	2 cut(s)	217, 267
HpyCH4IV	ACGT	2 cut(s)	408, 946
HpyCH4V	TGCA	8 cut(s)	211, 437, 569, 614, 632, 793, 840, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 443
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	2 cut(s)	408, 946
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	5 cut(s)	324, 639, 661, 670, 799
KpnI	GGTACC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	28, 38, 180, 669, 677
LmnI	GCTCC	2 cut(s)	146, 493
Lsp1109I	GCAGC	1 cut(s)	887
LweI	GCATC	4 cut(s)	197, 549, 827, 981
MaeI	CTAG	1 cut(s)	995
MaeII	ACGT	2 cut(s)	408, 946
MaeIII	GTNAC	1 cut(s)	1017
MalI	GATC	5 cut(s)	30, 40, 182, 671, 679
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	5 cut(s)	28, 38, 180, 669, 677
MboII	GAAGA	6 cut(s)	33, 38, 48, 794, 798, 872
MflI	RGATCY	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	5 cut(s)	111, 204, 894, 906, 1005
MluNI	TGGCCA	1 cut(s)	656
Mox20I	TGGCCA	1 cut(s)	656
Mph1103I	ATGCAT	1 cut(s)	842
MroXI	GAANNNNTTC	2 cut(s)	40, 958
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	4 cut(s)	597, 609, 821, 905
Msp20I	TGGCCA	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	885
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	2 cut(s)	344, 443
NdeII	GATC	5 cut(s)	28, 38, 180, 669, 677
NlaIII	CATG	5 cut(s)	324, 639, 661, 670, 799
NlaIV	GGNNCC	3 cut(s)	255, 404, 705
NmuCI	GTSAC	1 cut(s)	1017
NsiI	ATGCAT	1 cut(s)	842
NspI	RCATGY	1 cut(s)	639
PaqCI	CACCTGC	1 cut(s)	182
PceI	AGGCCT	2 cut(s)	312, 471
PciI	ACATGT	1 cut(s)	635
PdmI	GAANNNNTTC	2 cut(s)	40, 958
PfeI	GAWTC	3 cut(s)	589, 959, 977
PkrI	GCNGC	2 cut(s)	234, 902
PscI	ACATGT	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	883
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	3 cut(s)	255, 404, 705
PspPI	GGNCC	2 cut(s)	326, 403
PstI	CTGCAG	1 cut(s)	976
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	5 cut(s)	125, 159, 255, 691, 863
RsaNI	GTAC	5 cut(s)	124, 158, 254, 690, 862
SaqAI	TTAA	4 cut(s)	597, 609, 821, 905
SatI	GCNGC	2 cut(s)	233, 901
Sau3AI	GATC	5 cut(s)	28, 38, 180, 669, 677
Sau96I	GGNCC	2 cut(s)	326, 403
ScrFI	CCNGG	1 cut(s)	885
SfaNI	GCATC	4 cut(s)	197, 549, 827, 981
SfcI	CTRYAG	1 cut(s)	972
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	3 cut(s)	97, 465, 584
SmoI	CTYRAG	3 cut(s)	97, 465, 584
Sse9I	AATT	5 cut(s)	111, 204, 894, 906, 1005
SseBI	AGGCCT	2 cut(s)	312, 471
SsiI	CCGC	3 cut(s)	127, 233, 779
SspMI	CTAG	1 cut(s)	995
StuI	AGGCCT	2 cut(s)	312, 471
StyD4I	CCNGG	1 cut(s)	883
StyI	CCWWGG	2 cut(s)	218, 367
TaiI	ACGT	2 cut(s)	411, 949
TaqI	TCGA	2 cut(s)	31, 713
TasI	AATT	5 cut(s)	111, 204, 894, 906, 1005
TatI	WGTACW	2 cut(s)	157, 861
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	3 cut(s)	589, 959, 977
Tru1I	TTAA	4 cut(s)	597, 609, 821, 905
Tru9I	TTAA	4 cut(s)	597, 609, 821, 905
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	1 cut(s)	1017
TseI	GCWGC	1 cut(s)	900
Tsp45I	GTSAC	1 cut(s)	1017
TspDTI	ATGAA	1 cut(s)	969
TspRI	CASTG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	1005
XceI	RCATGY	1 cut(s)	639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	714
XmnI	GAANNNNTTC	2 cut(s)	40, 958
XspI	CTAG	1 cut(s)	995
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.