Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Reverse (-)

32057321 .. 32059332

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0223000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCGGACGACGGCGGCGTTCACAAGAGAGCTCTTACCAGTGTCGCCGACCTGGACGGCGTCCTTGATGAGATACTGGCAAGGCTACCGGTCAAATCACTGATGCGATTTCGCTGCGTCTGCAAGTCATGGCGTGCTCTCATCTCCCAGTCTCATTTTGTCGCCAAGCACTTCAACTACGCAAGCAAAGGCTTCACCGAGAACACCTCCGGTCTCTTGATATCAATGCGTCCTCTCAAATCCCGAGACTGTGAAGCATCCAAGGATTTGTCCCTAGACTGTGAAGCATTGAAGGACTTGAAGGATGATGGAGATGCTCATCTTGCAATTAGAAAGCTCAAATTTCCGGTAATTTTCCCCAATTCCAGTCGTAGAAAAATTGTGGGTTCTTGCAATGGGCTGATTTGTGTAGAAATTGACCAGAAAGACATGGTGTTATGGAACCCTTGTACTGGACAATCCAATTTGTTGCCAAAACCTACTGGTCATGTCACTTTGAAGCTTTGCGGAGTTGGTTATGATCTTACTATGAAGTTTTGGGGATTTGGTTATGATTCCACTAATGATGATTATAAGGTAGTGAGAGGGTACAATTATAGAGTTAGGGGTTCTGAGGGAACCGTGGTTCAGGTCTTTAGTTTAAAATCAGGTTCATGGAGGACCCATAAGGGTCTTAGTTACTTTTGCTTGGAAGGGCCAGGGTGCTTGTCAAATGGTGCTCTGCATTGGGCATTGACCAGATTCTATGATTTTCGTCCAACAGATTCAAGGACTATCTCTTTTGATTTAGCAGAGGAAAAGTTTCAGGTGATGATTCCATTGCCCTCTCAGGTTGGTTTTAGATACAGCTTTATTCCTGGAGATTTTCGTGGTGTATATACATATGGCTTTCCACACAATGAGATCATCAGGCTTAGAATATGGGTGATGAAGGAATATGGGGTCCAGGATTCGTGGACTGAAGTTGCTTCTTTAGATATTTTACGTGAGGATTGTCAATTCTCACTCGTGATGCCTCTGTGCCTATTAGAGAATGGTGAAGGTTTTATCGCCGCGAGTTGTGATTTTCAGTCCTTGGTATTATATAGCTTCAAGGAACAGACATTTAGGAATGTTGTTAGGGCCGACAACAAATGCCAATTTATTGCAGTCGTTTACAGGGAGACTTTAGTTTCACCAGTCACCAGTGATATTGCAGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

45.28

Weight (kDa)

7.87

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 53	3.4e-09	F-box domain
F-box-like	PF12937	21 - 51	7.3e-06	F-box-like
FBA_3	PF08268	115 - 375	2.4e-21	F-box associated beta propeller domain
FBA_1	PF07734	126 - 391	4.3e-24	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccII	CGCG	1 cut(s)	1055
AciI	CCGC	4 cut(s)	5, 15, 507, 1053
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	981
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	451, 590
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgeI	ACCGGT	1 cut(s)	88
AgsI	TTSAA	6 cut(s)	175, 292, 301, 499, 768, 1093
AjnI	CCWGG	4 cut(s)	51, 697, 856, 945
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	5 cut(s)	32, 337, 502, 849, 1089
AluI	AGCT	5 cut(s)	32, 337, 502, 849, 1089
Alw21I	GWGCWC	3 cut(s)	34, 139, 721
Alw26I	GTCTC	4 cut(s)	156, 218, 240, 1157
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	695, 1122
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	341
AsiGI	ACCGGT	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	801
AspS9I	GGNCC	4 cut(s)	660, 695, 943, 1122
AsuHPI	GGTGA	6 cut(s)	187, 820, 937, 1049, 1167, 1174
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	660, 943
BanII	GRGCYC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	1007
Bbv12I	GWGCWC	3 cut(s)	34, 139, 721
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	2 cut(s)	28, 73
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	4 cut(s)	53, 699, 858, 947
BcoDI	GTCTC	4 cut(s)	156, 218, 240, 1157
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	16, 115, 1053
BlsI	GCNGC	3 cut(s)	17, 116, 1054
Bme1390I	CCNGG	4 cut(s)	53, 699, 858, 947
Bme18I	GGWCC	2 cut(s)	660, 943
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	4 cut(s)	660, 695, 943, 1122
BmiI	GGNNCC	4 cut(s)	443, 619, 662, 944
BmrFI	CCNGG	4 cut(s)	53, 699, 858, 947
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	4 cut(s)	93, 266, 304, 1002
BmuI	ACTGGG	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	1 cut(s)	879
BsaAI	YACGTR	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	261, 621, 698, 1074
BsaWI	WCCGGW	3 cut(s)	88, 209, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	8 cut(s)	39, 81, 148, 366, 457, 487, 1178, 1185
Bse3DI	GCAATG	2 cut(s)	400, 818
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	4 cut(s)	53, 699, 858, 947
BseDI	CCNNGG	4 cut(s)	261, 621, 698, 1074
BseGI	GGATG	2 cut(s)	257, 310
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	2 cut(s)	400, 818
BseMII	CTCAG	2 cut(s)	603, 842
BseNI	ACTGG	8 cut(s)	39, 81, 148, 366, 457, 487, 1178, 1185
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	1055
BshFI	GGCC	2 cut(s)	697, 1124
BshTI	ACCGGT	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	34, 139, 721
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	89, 210, 347
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	4 cut(s)	156, 218, 240, 1157
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	697, 1124
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	34, 139, 721
Bsp143I	GATC	2 cut(s)	520, 903
BspACI	CCGC	4 cut(s)	5, 15, 507, 1053
BspANI	GGCC	2 cut(s)	697, 1124
BspCNI	CTCAG	2 cut(s)	604, 841
BspFNI	CGCG	1 cut(s)	1055
BspLI	GGNNCC	4 cut(s)	443, 619, 662, 944
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	400, 818
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	8 cut(s)	39, 81, 148, 366, 457, 487, 1178, 1185
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	261, 621, 698, 1074
BssMI	GATC	2 cut(s)	520, 903
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	1007
BssT1I	CCWWGG	2 cut(s)	261, 1074
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	4 cut(s)	53, 699, 858, 947
Bst4CI	ACNGT	3 cut(s)	251, 281, 622
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	986
BstC8I	GCNNGC	2 cut(s)	135, 184
BstDEI	CTNAG	4 cut(s)	612, 674, 828, 914
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	257, 310
BstFNI	CGCG	1 cut(s)	1055
BstKTI	GATC	2 cut(s)	523, 906
BstMAI	GTCTC	4 cut(s)	156, 218, 240, 1157
BstMBI	GATC	2 cut(s)	520, 903
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 323
BstNI	CCWGG	4 cut(s)	53, 699, 858, 947
BstSCI	CCNGG	4 cut(s)	51, 697, 856, 945
BstUI	CGCG	1 cut(s)	1055
BstV1I	GCAGC	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	697, 1124
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	257, 310
BtsIMutI	CAGTG	3 cut(s)	46, 98, 1192
Cac8I	GCNNGC	2 cut(s)	135, 184
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	4 cut(s)	660, 695, 943, 1122
CseI	GACGC	3 cut(s)	49, 106, 218
Csp6I	GTAC	2 cut(s)	450, 589
CspAI	ACCGGT	1 cut(s)	88
CviAII	CATG	4 cut(s)	129, 430, 488, 654
CviQI	GTAC	2 cut(s)	450, 589
DdeI	CTNAG	4 cut(s)	612, 674, 828, 914
DpnI	GATC	2 cut(s)	522, 905
DpnII	GATC	2 cut(s)	520, 903
DraI	TTTAAA	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	261, 1074
Eco24I	GRGCYC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	660, 943
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	981
Eco88I	CYCGRG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRII	CCWGG	4 cut(s)	51, 697, 856, 945
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	261, 1074
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	261, 1074
FaeI	CATG	4 cut(s)	132, 433, 491, 657
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	4 cut(s)	128, 429, 487, 653
FauNDI	CATATG	1 cut(s)	883
Fnu4HI	GCNGC	3 cut(s)	16, 115, 1053
FokI	GGATG	2 cut(s)	244, 317
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	3 cut(s)	16, 115, 1053
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	3 cut(s)	16, 115, 1053
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	697, 1124
HapII	CCGG	3 cut(s)	89, 210, 347
HgaI	GACGC	3 cut(s)	49, 106, 218
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	132, 433, 491, 657
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	5 cut(s)	554, 741, 764, 814, 950
HpaII	CCGG	3 cut(s)	89, 210, 347
HphI	GGTGA	6 cut(s)	187, 820, 937, 1049, 1167, 1174
Hpy166II	GTNNAC	3 cut(s)	22, 957, 1156
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	3 cut(s)	217, 243, 1009
Hpy8I	GTNNAC	3 cut(s)	22, 957, 1156
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	5 cut(s)	286, 295, 686, 925, 1034
HpyCH4III	ACNGT	3 cut(s)	251, 281, 622
HpyCH4IV	ACGT	1 cut(s)	985
HpyCH4V	TGCA	6 cut(s)	123, 326, 393, 724, 1148, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 323
HpyF3I	CTNAG	4 cut(s)	612, 674, 828, 914
HpySE526I	ACGT	1 cut(s)	985
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	132, 433, 491, 657
Kzo9I	GATC	2 cut(s)	520, 903
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	4 cut(s)	93, 266, 304, 1002
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	985
MaeIII	GTNAC	3 cut(s)	490, 677, 1180
MalI	GATC	2 cut(s)	522, 905
MboI	GATC	2 cut(s)	520, 903
MhlI	GDGCHC	3 cut(s)	34, 139, 721
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	9 cut(s)	217, 243, 578, 607, 651, 787, 835, 982, 1026
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	1 cut(s)	641
MspI	CCGG	3 cut(s)	89, 210, 347
MspR9I	CCNGG	4 cut(s)	53, 699, 858, 947
MvaI	CCWGG	4 cut(s)	53, 699, 858, 947
MvnI	CGCG	1 cut(s)	1055
MwoI	GCNNNNNNNGC	2 cut(s)	120, 323
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	2 cut(s)	520, 903
NlaIII	CATG	4 cut(s)	132, 433, 491, 657
NlaIV	GGNNCC	4 cut(s)	443, 619, 662, 944
NmuCI	GTSAC	2 cut(s)	490, 1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	5 cut(s)	554, 741, 764, 814, 950
PflFI	GACNNNGTC	1 cut(s)	59
PfoI	TCCNGGA	2 cut(s)	856, 945
PinAI	ACCGGT	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	17, 116, 1054
Ppu21I	YACGTR	1 cut(s)	986
PpuMI	RGGWCCY	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	4 cut(s)	51, 697, 856, 945
PspGI	CCWGG	4 cut(s)	51, 697, 856, 945
PspN4I	GGNNCC	4 cut(s)	443, 619, 662, 944
PspPI	GGNCC	4 cut(s)	660, 695, 943, 1122
PspPPI	RGGWCCY	1 cut(s)	660
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	451, 590
RsaNI	GTAC	2 cut(s)	450, 589
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	3 cut(s)	16, 115, 1053
Sau3AI	GATC	2 cut(s)	520, 903
Sau96I	GGNCC	4 cut(s)	660, 695, 943, 1122
ScrFI	CCNGG	4 cut(s)	53, 699, 858, 947
SduI	GDGCHC	3 cut(s)	34, 139, 721
SfaNI	GCATC	4 cut(s)	93, 266, 304, 1002
SinI	GGWCC	2 cut(s)	660, 943
SsiI	CCGC	4 cut(s)	5, 15, 507, 1053
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	4 cut(s)	51, 697, 856, 945
StyI	CCWWGG	2 cut(s)	261, 1074
TaaI	ACNGT	3 cut(s)	251, 281, 622
TaiI	ACGT	1 cut(s)	988
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	2 cut(s)	18, 1055
TfiI	GAWTC	5 cut(s)	554, 741, 764, 814, 950
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	3 cut(s)	46, 105, 1192
TseFI	GTSAC	2 cut(s)	490, 1180
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	2 cut(s)	490, 1180
TspDTI	ATGAA	3 cut(s)	545, 642, 944
TspRI	CASTG	3 cut(s)	46, 105, 1192
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	660, 943
XapI	RAATTY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.