Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Reverse (-)

13000296 .. 13002782

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGTCTCCGAGGCCAGTTCCTGAAGATCGGGGAGGATCTTCTCCCCATTTCAGGCAAACACCCTTTCAAATAATCCATATTATTGGAAACTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGTTACTTGTCTGAAACGGGAGCTTCGGTTGTACTTTTTCTGTTCACCTGCCTGATCCCAGCATCCATCGTGTTTCTAATTATGCAAAAGCCTTGGAAGGGCAGGCCGCTCTCAAATACGCAGGTGGTGCCTTCTGTAATAAATGGTGGCATAACAGCTTTATACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTGAGAGCTATATTAGCAGAGTATTCTGGTGCTGTCCTTGGAGTACTGTCTGGAGTATTATATGGGCGCAGGGGTCACGTTTGGAAAAAGGTAGTGGGCTTATTGCAATGGTGGCATCTTTCTACTTCTTATCTCAAGGGTGGGCCATGGAAACATATTCTCCATTCTATATCCTCTTTTATTAAATCCGTCCTTTCCCTACTGATTAGGATTGTTGTGTTTTATTATTGTTCCTTCCCATATCCTCCATGTCGTCTTTCCTCTTCTGTCTTTTTGGTTTGTCTATTTTCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.38

Weight (kDa)

10.07

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	182, 238
Acc36I	ACCTGC	2 cut(s)	182, 238
AccB1I	GGYRCC	1 cut(s)	253
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	2 cut(s)	46, 175
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	3 cut(s)	125, 159, 375
AfiI	CCNNNNNNNGG	2 cut(s)	54, 224
AgsI	TTSAA	2 cut(s)	71, 621
AluBI	AGCT	3 cut(s)	149, 284, 338
AluI	AGCT	3 cut(s)	149, 284, 338
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	46, 175
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	4 cut(s)	14, 230, 310, 473
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	326, 473
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	253
BccI	CCATC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	12
BfuAI	ACCTGC	2 cut(s)	182, 238
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	326, 473
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	2 cut(s)	197, 454
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	118, 449
BsaJI	CCNNGG	4 cut(s)	11, 218, 367, 476
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 224
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	443
BseDI	CCNNGG	4 cut(s)	11, 218, 367, 476
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	54, 224
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	4 cut(s)	16, 232, 312, 475
BshNI	GGYRCC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	54, 224
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	4 cut(s)	16, 232, 312, 475
Bsp143I	GATC	3 cut(s)	28, 38, 180
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	4 cut(s)	16, 232, 312, 475
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	2 cut(s)	182, 238
BspPI	GGATC	2 cut(s)	46, 175
BspT107I	GGYRCC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	11, 218, 367, 476
BssMI	GATC	3 cut(s)	28, 38, 180
BssT1I	CCWWGG	3 cut(s)	218, 367, 476
Bst4CI	ACNGT	2 cut(s)	128, 378
Bst6I	CTCTTC	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	31, 41, 183
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	28, 38, 180
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 344, 442
BstX2I	RGATCY	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	16, 232, 312, 475
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	188
BveI	ACCTGC	2 cut(s)	182, 238
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	326, 473
Csp6I	GTAC	3 cut(s)	124, 158, 374
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	3 cut(s)	321, 477, 579
CviJI	RGCY	9 cut(s)	16, 149, 217, 232, 284, 312, 338, 429, 475
CviKI_1	RGCY	9 cut(s)	16, 149, 217, 232, 284, 312, 338, 429, 475
CviQI	GTAC	3 cut(s)	124, 158, 374
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	3 cut(s)	30, 40, 182
DpnII	GATC	3 cut(s)	28, 38, 180
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco130I	CCWWGG	3 cut(s)	218, 367, 476
Eco147I	AGGCCT	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	45
EcoT14I	CCWWGG	3 cut(s)	218, 367, 476
ErhI	CCWWGG	3 cut(s)	218, 367, 476
FaeI	CATG	3 cut(s)	324, 480, 582
FatI	CATG	3 cut(s)	320, 476, 578
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	233
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	4 cut(s)	16, 232, 312, 475
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	324, 480, 582
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	171, 326
Hpy188I	TCNGA	3 cut(s)	12, 139, 333
Hpy188III	TCNNGA	3 cut(s)	23, 97, 381
Hpy8I	GTNNAC	2 cut(s)	171, 326
HpyAV	CCTTC	3 cut(s)	217, 267, 574
HpyCH4III	ACNGT	2 cut(s)	128, 378
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	211, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 344, 442
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	324, 480, 582
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	28, 38, 180
LmnI	GCTCC	1 cut(s)	146
LweI	GCATC	2 cut(s)	197, 454
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	128, 404
MalI	GATC	3 cut(s)	30, 40, 182
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	28, 38, 180
MboII	GAAGA	3 cut(s)	33, 38, 585
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	2 cut(s)	111, 204
MnlI	CCTC	7 cut(s)	6, 29, 323, 339, 514, 585, 601
MseI	TTAA	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	253, 344, 442
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	3 cut(s)	28, 38, 180
NlaIII	CATG	3 cut(s)	324, 480, 582
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	404
PaqCI	CACCTGC	2 cut(s)	182, 238
PceI	AGGCCT	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	326, 473
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	3 cut(s)	125, 159, 375
RsaNI	GTAC	3 cut(s)	124, 158, 374
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	3 cut(s)	28, 38, 180
Sau96I	GGNCC	2 cut(s)	326, 473
ScaI	AGTACT	1 cut(s)	375
SetI	ASST	8 cut(s)	151, 176, 252, 286, 331, 340, 411, 423
SfaNI	GCATC	2 cut(s)	197, 454
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	97, 464
SmoI	CTYRAG	2 cut(s)	97, 464
Sse9I	AATT	2 cut(s)	111, 204
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	233
StuI	AGGCCT	1 cut(s)	312
StyI	CCWWGG	3 cut(s)	218, 367, 476
TaaI	ACNGT	2 cut(s)	128, 378
TaiI	ACGT	1 cut(s)	411
TasI	AATT	2 cut(s)	111, 204
TatI	WGTACW	2 cut(s)	157, 373
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.