RchiOBHm_Chr1g0351941

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008746
Physical Location & Seq
Forward (+)
45093761 .. 45096574
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57769

Sequence Viewer

Length: 525 bp
ATGAAAGAGATGGCAATTCCAATCTTTGCAGGAATCTTATCAGCATTGAGGAGGGTGATTGCAAGGCGTGTTTCATTGAAGAATCAACTTAAAAGGCGACTTCATGCTCTAACTATTGCCTCTGCAACATGCTTCATGTTTCCTATTGCCATGTGGGACGTAATCATAGGATCAGCTTCTAGCAGCAGCAATAAGATGCCATTCTCTACTTGGGCTTTTCTAAGCACCATTCTTTTTGGAGTTATCTTGATATTCTATGTTGATAGTATTGCGGAAGAGAGATTACACATGGTTTTCTCTTCTCCAAAGCATTTGATGGTAGCTGGAGGATGCATAATCGTGATGGAAAAGGTGTACAAATTGGACTTTTCTCTTCCAGGATTCCTAATTTGCTGCATAGTTTTGGGCTTTGGGATATACGAAGCAACTTCTTTGGAACGTGGTAGAAAAGATTCTTTCCAAAAGCCTGATTCATCGGATGGGATTTTGGGAGATGAAATTCAGATGTCTGCACTTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.27

Weight (kDa)

8.98

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 498
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 2 cut(s) 176, 323
AluI AGCT 2 cut(s) 176, 323
AlwI GGATC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 183, 186, 393
ApoI RAATTY 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbvI GCAGC 3 cut(s) 195, 198, 380
BccI CCATC 4 cut(s) 4, 310, 337, 473
BciT130I CCWGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 184, 187, 394
BlsI GCNGC 3 cut(s) 185, 188, 395
Bme1390I CCNGG 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 186, 320
BpmI CTGGAG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 335, 484
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 3 cut(s) 195, 198, 380
BsgI GTGCAG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 170
BspACI CCGC 1 cut(s) 272
BspPI GGATC 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 354
BssMI GATC 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 378
Bst6I CTCTTC 3 cut(s) 270, 304, 378
BstAUI TGTACA 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 335, 484
BstKTI GATC 1 cut(s) 173
BstMBI GATC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 195, 198, 380
BtsCI GGATG 2 cut(s) 335, 484
Csp6I GTAC 1 cut(s) 355
CviAII CATG 5 cut(s) 104, 129, 136, 151, 289
CviJI RGCY 5 cut(s) 176, 215, 323, 408, 466
CviKI_1 RGCY 5 cut(s) 176, 215, 323, 408, 466
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 270, 304, 378
EarI CTCTTC 3 cut(s) 270, 304, 378
EcoRII CCWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 335
FaeI CATG 5 cut(s) 107, 132, 139, 154, 292
FaqI GGGAC 1 cut(s) 170
FatI CATG 5 cut(s) 103, 128, 135, 150, 288
Fnu4HI GCNGC 3 cut(s) 184, 187, 394
FokI GGATG 2 cut(s) 342, 491
Fsp4HI GCNGC 3 cut(s) 184, 187, 394
FspBI CTAG 1 cut(s) 180
GluI GCNGC 3 cut(s) 184, 187, 394
GsuI CTGGAG 1 cut(s) 345
Hin1II CATG 5 cut(s) 107, 132, 139, 154, 292
HinfI GANTC 5 cut(s) 33, 82, 381, 452, 470
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 478, 504
Hpy188III TCNNGA 2 cut(s) 247, 340
Hpy8I GTNNAC 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 159, 439
HpyCH4V TGCA 6 cut(s) 29, 62, 125, 333, 396, 512
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 159, 439
Hsp92II CATG 5 cut(s) 107, 132, 139, 154, 292
Kzo9I GATC 1 cut(s) 170
LpnPI CCDG 5 cut(s) 15, 309, 363, 390, 480
Lsp1109I GCAGC 3 cut(s) 195, 198, 380
LweI GCATC 2 cut(s) 186, 320
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 159, 439
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 4 cut(s) 91, 287, 291, 365
MluCI AATT 4 cut(s) 15, 359, 387, 498
MnlI CCTC 4 cut(s) 42, 45, 130, 320
Mph1103I ATGCAT 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
NdeII GATC 1 cut(s) 170
NlaIII CATG 5 cut(s) 107, 132, 139, 154, 292
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 5 cut(s) 33, 82, 381, 452, 470
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 185, 188, 395
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 184, 187, 394
Sau3AI GATC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 378
SetI ASST 5 cut(s) 162, 178, 325, 354, 442
SfaNI GCATC 2 cut(s) 186, 320
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 4 cut(s) 15, 359, 387, 498
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 376
TaiI ACGT 2 cut(s) 162, 442
TasI AATT 4 cut(s) 15, 359, 387, 498
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 5 cut(s) 33, 82, 381, 452, 470
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 3 cut(s) 183, 186, 393
TspDTI ATGAA 6 cut(s) 17, 63, 92, 124, 462, 510
XapI RAATTY 1 cut(s) 498
XceI RCATGY 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.