Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008746

Physical Location & Seq

Genomic Coordinates Forward (+)

44670986 .. 44673337

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG236900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGACTCCAAGGCAAGTTTCTGAAGATCGAGGATCTCCGCAACATTTCAGGCACACTCCTTTGCAAGTAATCCATATTGTTGGAAATTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGTTACTTGTCTCAGACGGGGGCTTCGGTTGTACTATTTCTCTTCATTTGTCTGATCCCAGCATCCATCCTATTTCTAATTTTGCAGAAGCCTTGGAAGGGCAGGCCACTCTCAAATACACAGGTGGTTCCTTCTATTATAAATGGTGGTATAACAGCTCTGTACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTTAGAGCTATAATGGCAGAGTATTCTGGTGCTATCCTTGGAGTACTCTCTGCAGTATTATATGGGCGGAAGGGTCACGCTTGGAAAAAGATAGGCGGGCTTATTGCAATGGTGGCGTCTTTCTACTTCTTATCTCAAGGGTGGGCCACGGAAACGTCCTCTCCATTCTATATCCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.8

Weight (kDa)

10.07

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38380 AT5G38380
fragaria_vesca	FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860 FvH4_7g12860
malus_domestica	MD02G1195600.v1.1 MD07G1125200.v1.1
prunus_persica	Prupe.2G152900_v2.0.a1
pyrus_communis	pycom02g15950
rosa_chinensis	RchiOBHm_Chr1g0351931 RchiOBHm_Chr1g0351941
rosa_laevigata	RLG00000028373
rosa_multiflora	Rmu_sc0007728.1_g000008
rosa_roxburghii	Rroxscaffold_4G00303440
rosa_rugosa	Rorug01G0223000
rosa_samantha	Rh1AG236900 Rh1AG237000 Rh1BG207200 Rh1CG221400 Rh1DG234200
rosa_wichuraiana	Rw1G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AciI	CCGC	3 cut(s)	41, 394, 423
AclWI	GGATC	2 cut(s)	43, 172
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	4 cut(s)	122, 156, 287, 372
AfiI	CCNNNNNNNGG	1 cut(s)	221
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	281, 335
AluI	AGCT	2 cut(s)	281, 335
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	43, 172
AoxI	GGCC	3 cut(s)	227, 307, 471
ApoI	RAATTY	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AspS9I	GGNCC	2 cut(s)	323, 471
AvaII	GGWCC	1 cut(s)	323
BccI	CCATC	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	378
BmcAI	AGTACT	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	323, 471
BmiI	GGNNCC	1 cut(s)	252
BmsI	GCATC	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	115, 447
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	11, 215, 364, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	11, 215, 364, 474
BseGI	GGATG	2 cut(s)	185, 189
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	181
BshFI	GGCC	3 cut(s)	229, 309, 473
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	229, 309, 473
Bsp143I	GATC	3 cut(s)	28, 35, 177
BspACI	CCGC	3 cut(s)	41, 394, 423
BspANI	GGCC	3 cut(s)	229, 309, 473
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	2 cut(s)	43, 172
BsrDI	GCAATG	1 cut(s)	441
BssECI	CCNNGG	4 cut(s)	11, 215, 364, 474
BssMI	GATC	3 cut(s)	28, 35, 177
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	3 cut(s)	11, 215, 364
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	227, 425
BstDEI	CTNAG	2 cut(s)	135, 329
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	185, 189
BstKTI	GATC	3 cut(s)	31, 38, 180
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	28, 35, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 440
BstSFI	CTRYAG	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	229, 309, 473
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	185, 189
Cac8I	GCNNGC	2 cut(s)	227, 425
Cfr13I	GGNCC	2 cut(s)	323, 471
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	4 cut(s)	121, 155, 286, 371
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	8 cut(s)	146, 214, 229, 281, 309, 335, 427, 473
CviKI_1	RGCY	8 cut(s)	146, 214, 229, 281, 309, 335, 427, 473
CviQI	GTAC	4 cut(s)	121, 155, 286, 371
DdeI	CTNAG	2 cut(s)	135, 329
DpnI	GATC	3 cut(s)	30, 37, 179
DpnII	GATC	3 cut(s)	28, 35, 177
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	3 cut(s)	11, 215, 364
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	45
EcoT14I	CCWWGG	3 cut(s)	11, 215, 364
ErhI	CCWWGG	3 cut(s)	11, 215, 364
FaeI	CATG	1 cut(s)	321
FaiI	YATR	9 cut(s)	78, 103, 263, 275, 319, 338, 388, 390, 498
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	416
FokI	GGATG	2 cut(s)	172, 176
GsaI	CCCAGC	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	229, 309, 473
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	321
HinfI	GANTC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	25, 138, 177
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	214, 264, 391
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	4 cut(s)	67, 208, 380, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 440
HpyF3I	CTNAG	2 cut(s)	135, 329
HpySE526I	ACGT	1 cut(s)	482
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	28, 35, 177
LpnPI	CCDG	6 cut(s)	37, 131, 195, 211, 230, 339
LweI	GCATC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	125, 401
MalI	GATC	3 cut(s)	30, 37, 179
MboI	GATC	3 cut(s)	28, 35, 177
MboII	GAAGA	2 cut(s)	38, 157
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	3 cut(s)	88, 108, 201
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	26, 320, 336, 496
MseI	TTAA	1 cut(s)	508
MwoI	GCNNNNNNNGC	2 cut(s)	341, 440
NdeII	GATC	3 cut(s)	28, 35, 177
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	323, 471
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	4 cut(s)	122, 156, 287, 372
RsaNI	GTAC	4 cut(s)	121, 155, 286, 371
SaqAI	TTAA	1 cut(s)	508
Sau3AI	GATC	3 cut(s)	28, 35, 177
Sau96I	GGNCC	2 cut(s)	323, 471
ScaI	AGTACT	1 cut(s)	372
SetI	ASST	5 cut(s)	249, 283, 328, 337, 485
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	94, 462
SmoI	CTYRAG	2 cut(s)	94, 462
Sse9I	AATT	3 cut(s)	88, 108, 201
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	3 cut(s)	41, 394, 423
StuI	AGGCCT	1 cut(s)	309
StyI	CCWWGG	3 cut(s)	11, 215, 364
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	88, 108, 201
TatI	WGTACW	3 cut(s)	154, 285, 370
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	88
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.