MD07G1125200.v1.1

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0008746
Physical Location & Seq
Forward (+)
17557210 .. 17558977
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1125200.v1.1.491

Sequence Viewer

Length: 339 bp
ATGATGTCTCCGAGGCCAGTTCCTGAAGACGGAGGAGGATCTTCTCCCCATTTCAGGCAAACACCCTTTCAAATAATCCATATTATTGGAAATTTCTTGAGAATATGGTCAATTGACTTCTTGTATCGCTACTTGTCTGAAACAGGAGCTTCGGTTGTACTTTTTCTCTTCACCTGCCTGATCCCAGCATCCACCCTATTTATAATTATGCAAAAACCTTGGAAGGGCAGGCCGCTCTCAAATACACAGGTGGTGCCTTCTATAATAAATGGTGGCATAACAGCTTTATACTTTATTTTGTGGGGAAAGGGCCTCAAATCATGTGGACCTCTAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.46

Weight (kDa)

9.69

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 253
AccBSI CCGCTC 1 cut(s) 235
AciI CCGC 1 cut(s) 233
AclWI GGATC 2 cut(s) 46, 175
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 3 cut(s) 29, 54, 224
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 2 cut(s) 149, 284
AluI AGCT 2 cut(s) 149, 284
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 46, 175
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 3 cut(s) 14, 230, 310
ApoI RAATTY 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 310, 326
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 310, 326
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 11, 218
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 54, 224
Bse1I ACTGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 11, 218
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 3 cut(s) 29, 54, 224
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 16, 232, 312
BshNI GGYRCC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 29, 54, 224
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 3 cut(s) 16, 232, 312
Bsp143I GATC 2 cut(s) 38, 180
BspACI CCGC 1 cut(s) 233
BspANI GGCC 3 cut(s) 16, 232, 312
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 46, 175
BspT107I GGYRCC 1 cut(s) 253
BsrBI CCGCTC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 11, 218
BssMI GATC 2 cut(s) 38, 180
BssT1I CCWWGG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 2 cut(s) 41, 183
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 38, 180
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 38
BstXI CCANNNNNNTGG 1 cut(s) 86
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 3 cut(s) 16, 232, 312
BtsCI GGATG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 230
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 310, 326
Csp6I GTAC 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 1 cut(s) 321
CviJI RGCY 5 cut(s) 16, 149, 232, 284, 312
CviKI_1 RGCY 5 cut(s) 16, 149, 232, 284, 312
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 1 cut(s) 332
DpnI GATC 2 cut(s) 40, 182
DpnII GATC 2 cut(s) 38, 180
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 324
FaiI YATR 8 cut(s) 81, 106, 203, 209, 263, 278, 289, 322
FatI CATG 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 3 cut(s) 16, 232, 312
Hin1II CATG 1 cut(s) 324
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 12, 139
Hpy188III TCNNGA 2 cut(s) 23, 97
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 217, 267
HpyCH4V TGCA 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 1 cut(s) 324
Kzo9I GATC 2 cut(s) 38, 180
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 30, 36, 40, 129, 187, 191, 198, 214, 233
LweI GCATC 1 cut(s) 197
MalI GATC 2 cut(s) 40, 182
MbiI CCGCTC 1 cut(s) 235
MboI GATC 2 cut(s) 38, 180
MboII GAAGA 3 cut(s) 33, 38, 160
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 38
MluCI AATT 3 cut(s) 91, 111, 204
MnlI CCTC 5 cut(s) 6, 26, 29, 323, 339
MunI CAATTG 1 cut(s) 111
NdeII GATC 2 cut(s) 38, 180
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 234
PsiI TTATAA 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 2 cut(s) 310, 326
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 2 cut(s) 38, 180
Sau96I GGNCC 2 cut(s) 310, 326
SetI ASST 6 cut(s) 151, 176, 220, 252, 286, 331
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 3 cut(s) 91, 111, 204
SsiI CCGC 1 cut(s) 233
StyI CCWWGG 1 cut(s) 218
TasI AATT 3 cut(s) 91, 111, 204
TatI WGTACW 1 cut(s) 157
TauI GCSGC 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.