Rw1G020610

zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008746
Physical Location & Seq
Forward (+)
44221385 .. 44226212
4828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020610.1

Sequence Viewer

Length: 1047 bp
ATGATGTCTCCAAGGCAAGTTTCTGAAGATCGAGGATCTCCGCAACATTTCAGGCACACTCCTTTGCAAGTAATCCATATTGTTGGAAATTTCTTGAGAATATGGTCAATTTACTCCCTGTACCGTTACTTGTCTCAGACGGGGGCTTCGGTTGTACTATTTCTCTTCATTTGTCTGATCCCAGCATCCATCCTATTTCTAATTTTGCAGAAGCCTTGGAAGGGCAGGCCACTCTCAAATACACAGGTGGTTCCTTCTATTATAAATGGTGGTATAACAGCTCTGTACTTTATTTTGTGGGGAAAAGGCCTCAAATCATGTGGACCTCTTAGAGCTATAATGGCAGAGTATTCTGGTGCTATCCTTGGAGTACTCTCTGCAGTATTATATGGGCGGAAGGGTCACGCTTGGAAAAAGATAGGCGGGCTTATTGCAATGGTGGCGTCTTTCTACTTCTTATCTCAAGGGTGGGCCACGGAAACTAACGTTGATGCTGAGGTTCAGCCAGAACAGGTGTTAGGTATGAAAGAGATGGCAATTCCAATCTTTGCAGGAATCTTATCAGCATTGAGGAGGGTGATTGCAAGGCGTGTTTCATTGAAGAATCAACTTAAAAGGCGACTTCATGCTCTAACTATTGCCTCTGCAACATGCTTCATGTTTCCTATTGCCATGTGGGACGTAATCATAGGATCAGCTTCTAGCAGCAGCAATAAGATGCCATTCTCTACTTGGGCTTTTCTAAGCACCATTCTTTTTGGAGTTATCTTGATATTCTATGTTGATAGTATCGCAGAAGAGAGATTACACATGGTTTTCTCTTCTCCAAAGCATTTGATGGTAGCTGGAGGATGCATAATCGTGATGGAAACGGTGTACAAATTGGACTTTTCTCTTCCAGGATTCCTAATTTGCTGCATAGTTTTGGGCTTTGGGATATACGAAGCAACTTCTTTGGAACGTGGTAGAAAAGATTCTTTCCAAAAGCCTGATTCATCGGATGGGATTTTGGGAGATGAAATTCAGATGTCTGCACTTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

38.49

Weight (kDa)

9.45

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AciI CCGC 3 cut(s) 41, 394, 423
AclI AACGTT 1 cut(s) 486
AclWI GGATC 3 cut(s) 43, 172, 700
AcsI RAATTY 2 cut(s) 88, 1020
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 5 cut(s) 122, 156, 287, 372, 878
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 601
AjnI CCWGG 1 cut(s) 898
AjuI GAANNNNNNNTTGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 281, 335, 698, 845
AluI AGCT 4 cut(s) 281, 335, 698, 845
Alw26I GTCTC 2 cut(s) 12, 138
AlwI GGATC 3 cut(s) 43, 172, 700
AoxI GGCC 3 cut(s) 227, 307, 471
ApeKI GCWGC 3 cut(s) 705, 708, 915
ApoI RAATTY 2 cut(s) 88, 1020
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
Asp700I GAANNNNTTC 1 cut(s) 973
AspS9I GGNCC 2 cut(s) 323, 471
AsuHPI GGTGA 1 cut(s) 589
AvaII GGWCC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 789, 821
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 3 cut(s) 717, 720, 902
BccI CCATC 5 cut(s) 197, 526, 832, 859, 995
BciT130I CCWGG 1 cut(s) 900
BcoDI GTCTC 2 cut(s) 12, 138
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 3 cut(s) 706, 709, 916
BlsI GCNGC 3 cut(s) 707, 710, 917
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 900
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 323, 471
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 900
BmsI GCATC 4 cut(s) 194, 481, 708, 842
BpmI CTGGAG 1 cut(s) 867
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 115, 447
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 11, 215, 364, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 900
BseDI CCNNGG 4 cut(s) 11, 215, 364, 474
BseGI GGATG 4 cut(s) 185, 189, 857, 1006
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 149, 486
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 3 cut(s) 717, 720, 902
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 1017
BshFI GGCC 3 cut(s) 229, 309, 473
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 2 cut(s) 12, 138
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 3 cut(s) 229, 309, 473
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 4 cut(s) 28, 35, 177, 692
BspACI CCGC 3 cut(s) 41, 394, 423
BspANI GGCC 3 cut(s) 229, 309, 473
BspCNI CTCAG 2 cut(s) 148, 487
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 3 cut(s) 43, 172, 700
BsrDI GCAATG 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 876
BssECI CCNNGG 4 cut(s) 11, 215, 364, 474
BssMI GATC 4 cut(s) 28, 35, 177, 692
BssNI GRCGYC 1 cut(s) 443
BssT1I CCWWGG 3 cut(s) 11, 215, 364
Bst2UI CCWGG 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 125, 874
Bst6I CTCTTC 4 cut(s) 170, 792, 826, 900
BstACI GRCGYC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 876
BstC8I GCNNGC 2 cut(s) 227, 425
BstDEI CTNAG 4 cut(s) 135, 329, 495, 743
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 4 cut(s) 185, 189, 857, 1006
BstKTI GATC 4 cut(s) 31, 38, 180, 695
BstMAI GTCTC 2 cut(s) 12, 138
BstMBI GATC 4 cut(s) 28, 35, 177, 692
BstMWI GCNNNNNNNGC 2 cut(s) 341, 440
BstNI CCWGG 1 cut(s) 900
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 898
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 3 cut(s) 717, 720, 902
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 3 cut(s) 229, 309, 473
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 4 cut(s) 185, 189, 857, 1006
Cac8I GCNNGC 2 cut(s) 227, 425
Cfr13I GGNCC 2 cut(s) 323, 471
CseI GACGC 1 cut(s) 432
Csp6I GTAC 5 cut(s) 121, 155, 286, 371, 877
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 6 cut(s) 318, 626, 651, 658, 673, 811
CviQI GTAC 5 cut(s) 121, 155, 286, 371, 877
DdeI CTNAG 4 cut(s) 135, 329, 495, 743
DpnI GATC 4 cut(s) 30, 37, 179, 694
DpnII GATC 4 cut(s) 28, 35, 177, 692
Eam1104I CTCTTC 4 cut(s) 170, 792, 826, 900
EarI CTCTTC 4 cut(s) 170, 792, 826, 900
EciI GGCGGA 1 cut(s) 409
Eco130I CCWWGG 3 cut(s) 11, 215, 364
Eco147I AGGCCT 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 898
EcoT14I CCWWGG 3 cut(s) 11, 215, 364
EcoT22I ATGCAT 1 cut(s) 857
ErhI CCWWGG 3 cut(s) 11, 215, 364
FaeI CATG 6 cut(s) 321, 629, 654, 661, 676, 814
FaqI GGGAC 1 cut(s) 692
FatI CATG 6 cut(s) 317, 625, 650, 657, 672, 810
FauI CCCGC 1 cut(s) 416
Fnu4HI GCNGC 3 cut(s) 706, 709, 916
FokI GGATG 4 cut(s) 172, 176, 864, 1013
Fsp4HI GCNGC 3 cut(s) 706, 709, 916
FspBI CTAG 1 cut(s) 702
GluI GCNGC 3 cut(s) 706, 709, 916
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 3 cut(s) 229, 309, 473
HgaI GACGC 1 cut(s) 432
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 6 cut(s) 321, 629, 654, 661, 676, 814
HinfI GANTC 5 cut(s) 555, 604, 903, 974, 992
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 323, 877
Hpy188I TCNGA 5 cut(s) 25, 138, 177, 1000, 1026
Hpy188III TCNNGA 3 cut(s) 94, 769, 862
Hpy8I GTNNAC 2 cut(s) 323, 877
HpyAV CCTTC 3 cut(s) 214, 264, 391
HpyCH4III ACNGT 2 cut(s) 125, 874
HpyCH4IV ACGT 3 cut(s) 486, 681, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 440
HpyF3I CTNAG 4 cut(s) 135, 329, 495, 743
HpySE526I ACGT 3 cut(s) 486, 681, 961
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 6 cut(s) 321, 629, 654, 661, 676, 814
Kzo9I GATC 4 cut(s) 28, 35, 177, 692
Lsp1109I GCAGC 3 cut(s) 717, 720, 902
LweI GCATC 4 cut(s) 194, 481, 708, 842
MaeI CTAG 1 cut(s) 702
MaeII ACGT 3 cut(s) 486, 681, 961
MaeIII GTNAC 2 cut(s) 125, 401
MalI GATC 4 cut(s) 30, 37, 179, 694
MboI GATC 4 cut(s) 28, 35, 177, 692
MboII GAAGA 6 cut(s) 38, 157, 613, 809, 813, 887
MflI RGATCY 1 cut(s) 35
MluCI AATT 7 cut(s) 88, 108, 201, 537, 881, 909, 1020
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 8 cut(s) 26, 320, 336, 490, 564, 567, 652, 842
Mph1103I ATGCAT 1 cut(s) 857
MroXI GAANNNNTTC 1 cut(s) 973
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 860
MspR9I CCNGG 1 cut(s) 900
MvaI CCWGG 1 cut(s) 900
MwoI GCNNNNNNNGC 2 cut(s) 341, 440
NdeII GATC 4 cut(s) 28, 35, 177, 692
NlaIII CATG 6 cut(s) 321, 629, 654, 661, 676, 814
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 857
NspI RCATGY 1 cut(s) 654
PceI AGGCCT 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 973
PfeI GAWTC 5 cut(s) 555, 604, 903, 974, 992
PfoI TCCNGGA 1 cut(s) 898
PkrI GCNGC 3 cut(s) 707, 710, 917
PsiI TTATAA 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 898
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 323, 471
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 5 cut(s) 122, 156, 287, 372, 878
RsaNI GTAC 5 cut(s) 121, 155, 286, 371, 877
RseI CAYNNNNRTG 1 cut(s) 860
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 3 cut(s) 706, 709, 916
Sau3AI GATC 4 cut(s) 28, 35, 177, 692
Sau96I GGNCC 2 cut(s) 323, 471
ScaI AGTACT 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 900
SfaNI GCATC 4 cut(s) 194, 481, 708, 842
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 2 cut(s) 94, 462
SmoI CTYRAG 2 cut(s) 94, 462
Sse9I AATT 7 cut(s) 88, 108, 201, 537, 881, 909, 1020
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 3 cut(s) 41, 394, 423
SspMI CTAG 1 cut(s) 702
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 898
StyI CCWWGG 3 cut(s) 11, 215, 364
TaaI ACNGT 2 cut(s) 125, 874
TaiI ACGT 3 cut(s) 489, 684, 964
TaqI TCGA 1 cut(s) 31
TasI AATT 7 cut(s) 88, 108, 201, 537, 881, 909, 1020
TatI WGTACW 4 cut(s) 154, 285, 370, 876
TfiI GAWTC 5 cut(s) 555, 604, 903, 974, 992
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 705, 708, 915
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 7 cut(s) 157, 539, 585, 614, 646, 984, 1032
TspGWI ACGGA 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 88, 1020
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 1 cut(s) 729
XmnI GAANNNNTTC 1 cut(s) 973
XspI CTAG 1 cut(s) 702
ZrmI AGTACT 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.